RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 TIMD4Q96H15 378 aa11.89□□□□□ -0.51
USP4-206ENST00000461553 C4orf45Q96LM5 186 aa11.89□□□□□ -0.51
USP4-206ENST00000461553 GPX7Q96SL4 187 aaPredicted RBP11.89□□□□□ -0.51
USP4-206ENST00000461553 RACGAP1Q9H0H5 632 aa11.89□□□□□ -0.51
USP4-206ENST00000461553 SYT4Q9H2B2 425 aa11.89□□□□□ -0.51
USP4-206ENST00000461553 LPAR2Q9HBW0 351 aa11.89□□□□□ -0.51
USP4-206ENST00000461553 CYSLTR2Q9NS75 346 aa11.89□□□□□ -0.51
USP4-206ENST00000461553 DCAF13Q9NV06 445 aaKnown RBP11.89□□□□□ -0.51
USP4-206ENST00000461553 SIGLEC7Q9Y286 467 aa11.89□□□□□ -0.51
USP4-206ENST00000461553 POLR1DQ9Y2S0 133 aa11.89□□□□□ -0.51
USP4-206ENST00000461553 GRIP1Q9Y3R0 1128 aa11.89□□□□□ -0.51
USP4-206ENST00000461553 TRBV4-1A0A0J9YWV2 114 aa11.88□□□□□ -0.51
USP4-206ENST00000461553 FAM157AC9JC47 383 aa11.88□□□□□ -0.51
USP4-206ENST00000461553 SOCS2O14508 198 aa11.88□□□□□ -0.51
USP4-206ENST00000461553 WNT9BO14905 357 aa11.88□□□□□ -0.51
USP4-206ENST00000461553 SGCEO43556 437 aa11.88□□□□□ -0.51
USP4-206ENST00000461553 SPRY3O43610 288 aa11.88□□□□□ -0.51
USP4-206ENST00000461553 TIMM8AO60220 97 aaPredicted RBP11.88□□□□□ -0.51
USP4-206ENST00000461553 DIRAS1O95057 198 aa11.88□□□□□ -0.51
USP4-206ENST00000461553 IGHV1-46P01743 117 aa11.88□□□□□ -0.51
USP4-206ENST00000461553 COX5BP10606 129 aa11.88□□□□□ -0.51
USP4-206ENST00000461553 CTLA4P16410 223 aa11.88□□□□□ -0.51
USP4-206ENST00000461553 ZNF26P17031 533 aaPredicted RBP11.88□□□□□ -0.51
USP4-206ENST00000461553 CRYBB2P43320 205 aa11.88□□□□□ -0.51
USP4-206ENST00000461553 OMPP47874 163 aa11.88□□□□□ -0.51
USP4-206ENST00000461553 RPS6KA3P51812 740 aa11.88□□□□□ -0.51
USP4-206ENST00000461553 SPIBQ01892 262 aa11.88□□□□□ -0.51
USP4-206ENST00000461553 KRTAP24-1Q3LI83 254 aa11.88□□□□□ -0.51
USP4-206ENST00000461553 AVPI1Q5T686 147 aa11.88□□□□□ -0.51
USP4-206ENST00000461553 SHQ1Q6PI26 577 aaKnown RBP11.88□□□□□ -0.51
USP4-206ENST00000461553 TSEN54Q7Z6J9 526 aaKnown RBP11.88□□□□□ -0.51
USP4-206ENST00000461553 ZER1Q7Z7L7 766 aa11.88□□□□□ -0.51
USP4-206ENST00000461553 FAM86B1Q8N7N1 296 aa11.88□□□□□ -0.51
USP4-206ENST00000461553 MCUR1Q96AQ8 359 aa11.88□□□□□ -0.51
USP4-206ENST00000461553 DHRS1Q96LJ7 313 aa11.88□□□□□ -0.51
USP4-206ENST00000461553 EGLN1Q9GZT9 426 aa11.88□□□□□ -0.51
USP4-206ENST00000461553 RERGLQ9H628 205 aa11.88□□□□□ -0.51
USP4-206ENST00000461553 NRIP3Q9NQ35 241 aa11.88□□□□□ -0.51
USP4-206ENST00000461553 PLEK2Q9NYT0 353 aa11.88□□□□□ -0.51
USP4-206ENST00000461553 TREM2Q9NZC2 230 aa11.88□□□□□ -0.51
USP4-206ENST00000461553 UNC119BA6NIH7 251 aa11.87□□□□□ -0.51
USP4-206ENST00000461553 ZSCAN5BA6NJL1 495 aa11.87□□□□□ -0.51
USP4-206ENST00000461553 SLC16A7O60669 478 aa11.87□□□□□ -0.51
USP4-206ENST00000461553 KHDRBS3O75525 346 aaKnown RBP11.87□□□□□ -0.51
USP4-206ENST00000461553 HSD17B1P14061 328 aa11.87□□□□□ -0.51
USP4-206ENST00000461553 MMP15P51511 669 aa11.87□□□□□ -0.51
USP4-206ENST00000461553 SMIM11AP58511 58 aa11.87□□□□□ -0.51
USP4-206ENST00000461553 MVKQ03426 396 aa11.87□□□□□ -0.51
USP4-206ENST00000461553 SEC23BQ15437 767 aa11.87□□□□□ -0.51
USP4-206ENST00000461553 SAMD4BQ5PRF9 694 aaKnown RBP11.87□□□□□ -0.51
USP4-206ENST00000461553 DNM1P34Q6PK57 102 aa11.87□□□□□ -0.51
USP4-206ENST00000461553 VASH1Q7L8A9 365 aaPredicted RBP11.87□□□□□ -0.51
USP4-206ENST00000461553 GLB1L2Q8IW92 636 aa11.87□□□□□ -0.51
USP4-206ENST00000461553 PGAM4Q8N0Y7 254 aa11.87□□□□□ -0.51
USP4-206ENST00000461553 RFLNBQ8N5W9 214 aa11.87□□□□□ -0.51
USP4-206ENST00000461553 OR52J3Q8NH60 311 aa11.87□□□□□ -0.51
USP4-206ENST00000461553 C7orf34Q96L11 122 aa11.87□□□□□ -0.51
USP4-206ENST00000461553 NSMCE2Q96MF7 247 aa11.87□□□□□ -0.51
USP4-206ENST00000461553 DIRC2Q96SL1 478 aa11.87□□□□□ -0.51
USP4-206ENST00000461553 ZNF665Q9H7R5 613 aa11.87□□□□□ -0.51
USP4-206ENST00000461553 GORASP2Q9H8Y8 452 aa11.87□□□□□ -0.51
USP4-206ENST00000461553 HIF1ANQ9NWT6 349 aa11.87□□□□□ -0.51
USP4-206ENST00000461553 VSX1Q9NZR4 365 aaPredicted RBP11.87□□□□□ -0.51
USP4-206ENST00000461553 IL20RAQ9UHF4 553 aa11.87□□□□□ -0.51
USP4-206ENST00000461553 ZDHHC8Q9ULC8 765 aa11.87□□□□□ -0.51
USP4-206ENST00000461553 TCF21O43680 179 aa11.86□□□□□ -0.51
USP4-206ENST00000461553 GADD45GO95257 159 aa11.86□□□□□ -0.51
USP4-206ENST00000461553 NGFP01138 241 aa11.86□□□□□ -0.51
USP4-206ENST00000461553 SCG5P05408 212 aa11.86□□□□□ -0.51
USP4-206ENST00000461553 FABP3P05413 133 aa11.86□□□□□ -0.51
USP4-206ENST00000461553 ANPEPP15144 967 aa11.86□□□□□ -0.51
USP4-206ENST00000461553 MXRA7P84157 204 aa11.86□□□□□ -0.51
USP4-206ENST00000461553 SLC3A1Q07837 685 aa11.86□□□□□ -0.51
USP4-206ENST00000461553 SCGB2A2Q13296 93 aa11.86□□□□□ -0.51
USP4-206ENST00000461553 MTX3Q5HYI7 312 aa11.86□□□□□ -0.51
USP4-206ENST00000461553 TMEM255AQ5JRV8 349 aa11.86□□□□□ -0.51
USP4-206ENST00000461553 LIPNQ5VXI9 398 aa11.86□□□□□ -0.51
USP4-206ENST00000461553 PGM2L1Q6PCE3 622 aa11.86□□□□□ -0.51
USP4-206ENST00000461553 SMARCD3Q6STE5 483 aa11.86□□□□□ -0.51
USP4-206ENST00000461553 THSD4Q6ZMP0 1018 aa11.86□□□□□ -0.51
USP4-206ENST00000461553 DPY19L2P2Q6ZN68 376 aa11.86□□□□□ -0.51
USP4-206ENST00000461553 JAZF1Q86VZ6 243 aa11.86□□□□□ -0.51
USP4-206ENST00000461553 RAB1CQ92928 201 aa11.86□□□□□ -0.51
USP4-206ENST00000461553 PYURFQ96I23 114 aa11.86□□□□□ -0.51
USP4-206ENST00000461553 COG8Q96MW5 612 aa11.86□□□□□ -0.51
USP4-206ENST00000461553 LRRC37BQ96QE4 947 aa11.86□□□□□ -0.51
USP4-206ENST00000461553 TBCCD1Q9NVR7 557 aa11.86□□□□□ -0.51
USP4-206ENST00000461553 NDE1Q9NXR1 346 aa11.86□□□□□ -0.51
USP4-206ENST00000461553 ASH2LQ9UBL3 628 aa11.86□□□□□ -0.51
USP4-206ENST00000461553 TAGLN3Q9UI15 199 aa11.86□□□□□ -0.51
USP4-206ENST00000461553 WIPI2Q9Y4P8 454 aa11.86□□□□□ -0.51
USP4-206ENST00000461553 IER3IP1Q9Y5U9 82 aa11.86□□□□□ -0.51
USP4-206ENST00000461553 CACNG2Q9Y698 323 aa11.86□□□□□ -0.51
USP4-206ENST00000461553 ARHGAP32A7KAX9 2087 aa11.85□□□□□ -0.51
USP4-206ENST00000461553 TRAV20A0A0B4J274 112 aa11.85□□□□□ -0.51
USP4-206ENST00000461553 ISPDA4D126 451 aa11.85□□□□□ -0.51
USP4-206ENST00000461553 ARPC2O15144 300 aa11.85□□□□□ -0.51
USP4-206ENST00000461553 OR10H3O60404 316 aa11.85□□□□□ -0.51
USP4-206ENST00000461553 PTP4A3O75365 173 aa11.85□□□□□ -0.51
USP4-206ENST00000461553 DCTN3O75935 186 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms