RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-208	ENST00000459947	ZAR1L	A6NP61	321 aa		9.27	□□□□□ -0.93
UBR4-208	ENST00000459947	VGLL3	A8MV65	326 aa		9.27	□□□□□ -0.93
UBR4-208	ENST00000459947		H3BNX3	289 aa		9.27	□□□□□ -0.93
UBR4-208	ENST00000459947	GSTT1	P30711	240 aa		9.27	□□□□□ -0.93
UBR4-208	ENST00000459947	CDA	P32320	146 aa		9.27	□□□□□ -0.93
UBR4-208	ENST00000459947	SERPINF1	P36955	418 aa		9.27	□□□□□ -0.93
UBR4-208	ENST00000459947	HTR5A	P47898	357 aa		9.27	□□□□□ -0.93
UBR4-208	ENST00000459947	PSG4	Q00888	419 aa		9.27	□□□□□ -0.93
UBR4-208	ENST00000459947	CXXC5	Q7LFL8	322 aa	Known RBP	9.27	□□□□□ -0.93
UBR4-208	ENST00000459947	OR6V1	Q8N148	313 aa		9.27	□□□□□ -0.93
UBR4-208	ENST00000459947	IGFBPL1	Q8WX77	278 aa		9.27	□□□□□ -0.93
UBR4-208	ENST00000459947	INTS14	Q96SY0	518 aa		9.27	□□□□□ -0.93
UBR4-208	ENST00000459947	PKP2	Q99959	881 aa		9.27	□□□□□ -0.93
UBR4-208	ENST00000459947	PLEKHA6	Q9Y2H5	1048 aa		9.27	□□□□□ -0.93
UBR4-208	ENST00000459947	IGKV1D-43	A0A0B4J1Z2	117 aa		9.26	□□□□□ -0.93
UBR4-208	ENST00000459947	SAC3D1	A6NKF1	404 aa		9.26	□□□□□ -0.93
UBR4-208	ENST00000459947	SLC22A31	A6NKX4	558 aa		9.26	□□□□□ -0.93
UBR4-208	ENST00000459947	PLAU	P00749	431 aa		9.26	□□□□□ -0.93
UBR4-208	ENST00000459947	SELE	P16581	610 aa		9.26	□□□□□ -0.93
UBR4-208	ENST00000459947	GCH1	P30793	250 aa		9.26	□□□□□ -0.93
UBR4-208	ENST00000459947	GRB2	P62993	217 aa	Known RBP	9.26	□□□□□ -0.93
UBR4-208	ENST00000459947	ZNF718	Q3SXZ3	478 aa		9.26	□□□□□ -0.93
UBR4-208	ENST00000459947	C12orf73	Q69YU5	71 aa		9.26	□□□□□ -0.93
UBR4-208	ENST00000459947	NEU4	Q8WWR8	484 aa	Predicted RBP	9.26	□□□□□ -0.93
UBR4-208	ENST00000459947	RFK	Q969G6	155 aa		9.26	□□□□□ -0.93
UBR4-208	ENST00000459947	MRPL24	Q96A35	216 aa	Known RBP	9.26	□□□□□ -0.93
UBR4-208	ENST00000459947	POM121L2	Q96KW2	1035 aa		9.26	□□□□□ -0.93
UBR4-208	ENST00000459947	RAB1B	Q9H0U4	201 aa		9.26	□□□□□ -0.93
UBR4-208	ENST00000459947	EMC7	Q9NPA0	242 aa		9.26	□□□□□ -0.93
UBR4-208	ENST00000459947	SLC15A1	P46059	708 aa		9.26	□□□□□ -0.93
UBR4-208	ENST00000459947	TPTE	P56180	551 aa		9.26	□□□□□ -0.93
UBR4-208	ENST00000459947	KRTAP10-9	P60411	292 aa		9.26	□□□□□ -0.93
UBR4-208	ENST00000459947	LILRB1	Q8NHL6	650 aa	Predicted RBP	9.26	□□□□□ -0.93
UBR4-208	ENST00000459947	FBXO17	Q96EF6	278 aa		9.26	□□□□□ -0.93
UBR4-208	ENST00000459947	MRPL48	Q96GC5	212 aa	Known RBP	9.26	□□□□□ -0.93
UBR4-208	ENST00000459947	DIRC2	Q96SL1	478 aa		9.26	□□□□□ -0.93
UBR4-208	ENST00000459947	YIPF3	Q9GZM5	350 aa		9.26	□□□□□ -0.93
UBR4-208	ENST00000459947	PLK3	Q9H4B4	646 aa		9.26	□□□□□ -0.93
UBR4-208	ENST00000459947	FLNC	Q14315	2725 aa		9.26	□□□□□ -0.93
UBR4-208	ENST00000459947	OVOL3	O00110	214 aa		9.26	□□□□□ -0.93
UBR4-208	ENST00000459947	PRKACG	P22612	351 aa		9.26	□□□□□ -0.93
UBR4-208	ENST00000459947	PCK2	Q16822	640 aa		9.26	□□□□□ -0.93
UBR4-208	ENST00000459947	MEDAG	Q5VYS4	303 aa		9.26	□□□□□ -0.93
UBR4-208	ENST00000459947	OR8J1	Q8NGP2	316 aa		9.26	□□□□□ -0.93
UBR4-208	ENST00000459947	MS4A5	Q9H3V2	200 aa		9.26	□□□□□ -0.93
UBR4-208	ENST00000459947	CALCR	P30988	508 aa		9.25	□□□□□ -0.93
UBR4-208	ENST00000459947	PTH2R	P49190	550 aa		9.25	□□□□□ -0.93
UBR4-208	ENST00000459947	ART1	P52961	327 aa		9.25	□□□□□ -0.93
UBR4-208	ENST00000459947	ADAM8	P78325	824 aa		9.25	□□□□□ -0.93
UBR4-208	ENST00000459947	PTGES3	Q15185	160 aa	Known RBP	9.25	□□□□□ -0.93
UBR4-208	ENST00000459947	ZBTB49	Q6ZSB9	765 aa		9.25	□□□□□ -0.93
UBR4-208	ENST00000459947	TMEM163	Q8TC26	289 aa		9.25	□□□□□ -0.93
UBR4-208	ENST00000459947	APOBEC3D	Q96AK3	386 aa	Predicted RBP	9.25	□□□□□ -0.93
UBR4-208	ENST00000459947	EME1	Q96AY2	570 aa		9.25	□□□□□ -0.93
UBR4-208	ENST00000459947	VCX3B	Q9H321	246 aa		9.25	□□□□□ -0.93
UBR4-208	ENST00000459947	DYNLRB1	Q9NP97	96 aa		9.25	□□□□□ -0.93
UBR4-208	ENST00000459947	IMPAD1	Q9NX62	359 aa		9.25	□□□□□ -0.93
UBR4-208	ENST00000459947	ASH2L	Q9UBL3	628 aa		9.25	□□□□□ -0.93
UBR4-208	ENST00000459947	WARS2	Q9UGM6	360 aa	Known RBP	9.25	□□□□□ -0.93
UBR4-208	ENST00000459947	HGFAC	Q04756	655 aa		9.25	□□□□□ -0.93
UBR4-208	ENST00000459947	TAF13	Q15543	124 aa		9.25	□□□□□ -0.93
UBR4-208	ENST00000459947	PCGF3	Q3KNV8	242 aa		9.25	□□□□□ -0.93
UBR4-208	ENST00000459947	NXNL2	Q5VZ03	156 aa		9.25	□□□□□ -0.93
UBR4-208	ENST00000459947	VASH1	Q7L8A9	365 aa	Predicted RBP	9.25	□□□□□ -0.93
UBR4-208	ENST00000459947	SYNPR	Q8TBG9	265 aa		9.25	□□□□□ -0.93
UBR4-208	ENST00000459947	ASB17	Q8WXJ9	295 aa		9.25	□□□□□ -0.93
UBR4-208	ENST00000459947	CYB5R1	Q9UHQ9	305 aa		9.25	□□□□□ -0.93
UBR4-208	ENST00000459947	GDF2	Q9UK05	429 aa	Predicted RBP	9.25	□□□□□ -0.93
UBR4-208	ENST00000459947	SYNGR3	O43761	229 aa		9.25	□□□□□ -0.93
UBR4-208	ENST00000459947	BAG2	O95816	211 aa		9.25	□□□□□ -0.93
UBR4-208	ENST00000459947	ABHD16A	O95870	558 aa		9.25	□□□□□ -0.93
UBR4-208	ENST00000459947	ERF	P50548	548 aa		9.25	□□□□□ -0.93
UBR4-208	ENST00000459947	UCP2	P55851	309 aa		9.25	□□□□□ -0.93
UBR4-208	ENST00000459947	C11orf71	Q6IPW1	123 aa		9.25	□□□□□ -0.93
UBR4-208	ENST00000459947	SLC18B1	Q6NT16	456 aa		9.25	□□□□□ -0.93
UBR4-208	ENST00000459947	B3GLCT	Q6Y288	498 aa		9.25	□□□□□ -0.93
UBR4-208	ENST00000459947	SPNS3	Q6ZMD2	512 aa		9.25	□□□□□ -0.93
UBR4-208	ENST00000459947	HS3ST5	Q8IZT8	346 aa		9.25	□□□□□ -0.93
UBR4-208	ENST00000459947	OR6K6	Q8NGW6	343 aa		9.25	□□□□□ -0.93
UBR4-208	ENST00000459947		Q96MT0	163 aa		9.25	□□□□□ -0.93
UBR4-208	ENST00000459947	ATF6B	Q99941	703 aa		9.25	□□□□□ -0.93
UBR4-208	ENST00000459947	SEMA6A	Q9H2E6	1030 aa		9.25	□□□□□ -0.93
UBR4-208	ENST00000459947	RIBC2	Q9H4K1	309 aa		9.25	□□□□□ -0.93
UBR4-208	ENST00000459947	DCLRE1B	Q9H816	532 aa		9.25	□□□□□ -0.93
UBR4-208	ENST00000459947	TVP23B	Q9NYZ1	205 aa		9.25	□□□□□ -0.93
UBR4-208	ENST00000459947	ACOD1	A6NK06	481 aa		9.24	□□□□□ -0.93
UBR4-208	ENST00000459947	ZNF878	C9JN71	531 aa		9.24	□□□□□ -0.93
UBR4-208	ENST00000459947	ALPL	P05186	524 aa		9.24	□□□□□ -0.93
UBR4-208	ENST00000459947	OR4A8	P0C604	315 aa		9.24	□□□□□ -0.93
UBR4-208	ENST00000459947	CFL1	P23528	166 aa	Known RBP	9.24	□□□□□ -0.93
UBR4-208	ENST00000459947	APEX1	P27695	318 aa	Known RBP	9.24	□□□□□ -0.93
UBR4-208	ENST00000459947	THBS4	P35443	961 aa		9.24	□□□□□ -0.93
UBR4-208	ENST00000459947	KLF3	P57682	345 aa	Predicted RBP	9.24	□□□□□ -0.93
UBR4-208	ENST00000459947	MALL	Q13021	153 aa		9.24	□□□□□ -0.93
UBR4-208	ENST00000459947	ZNF362	Q5T0B9	420 aa	Predicted RBP	9.24	□□□□□ -0.93
UBR4-208	ENST00000459947	ACSM5	Q6NUN0	579 aa		9.24	□□□□□ -0.93
UBR4-208	ENST00000459947	CYB561A3	Q8NBI2	242 aa		9.24	□□□□□ -0.93
UBR4-208	ENST00000459947	ZNF555	Q8NEP9	628 aa		9.24	□□□□□ -0.93
UBR4-208	ENST00000459947	C4orf45	Q96LM5	186 aa		9.24	□□□□□ -0.93
UBR4-208	ENST00000459947	PITX2	Q99697	317 aa		9.24	□□□□□ -0.93

Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms