RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 B3GLCTQ6Y288 498 aa10.09□□□□□ -0.79
SCN9A-204ENST00000452182 RHOUQ7L0Q8 258 aa10.09□□□□□ -0.79
SCN9A-204ENST00000452182 VASH1Q7L8A9 365 aaPredicted RBP10.09□□□□□ -0.79
SCN9A-204ENST00000452182 SLC16A9Q7RTY1 509 aa10.09□□□□□ -0.79
SCN9A-204ENST00000452182 ERI1Q8IV48 349 aaKnown RBP10.09□□□□□ -0.79
SCN9A-204ENST00000452182 LINC01560Q8TB33 94 aa10.09□□□□□ -0.79
SCN9A-204ENST00000452182 CNIH3Q8TBE1 160 aa10.09□□□□□ -0.79
SCN9A-204ENST00000452182 FAM222BQ8WU58 562 aa10.09□□□□□ -0.79
SCN9A-204ENST00000452182 CNN2Q99439 309 aaKnown RBP10.09□□□□□ -0.79
SCN9A-204ENST00000452182 MNTQ99583 582 aa10.09□□□□□ -0.79
SCN9A-204ENST00000452182 YIPF3Q9GZM5 350 aa10.09□□□□□ -0.79
SCN9A-204ENST00000452182 CCNB1IP1Q9NPC3 277 aa10.09□□□□□ -0.79
SCN9A-204ENST00000452182 NGBQ9NPG2 151 aa10.09□□□□□ -0.79
SCN9A-204ENST00000452182 POLR1DQ9Y2S0 133 aa10.09□□□□□ -0.79
SCN9A-204ENST00000452182 A0A1W2PR80 420 aa10.08□□□□□ -0.8
SCN9A-204ENST00000452182 RAB36O95755 333 aa10.08□□□□□ -0.8
SCN9A-204ENST00000452182 PATE4P0C8F1 98 aa10.08□□□□□ -0.8
SCN9A-204ENST00000452182 DBTP11182 482 aaKnown RBP10.08□□□□□ -0.8
SCN9A-204ENST00000452182 ZNF14P17017 642 aaPredicted RBP10.08□□□□□ -0.8
SCN9A-204ENST00000452182 TUBA1BP68363 451 aa10.08□□□□□ -0.8
SCN9A-204ENST00000452182 TUBA4AP68366 448 aa10.08□□□□□ -0.8
SCN9A-204ENST00000452182 ZNF91Q05481 1191 aa10.08□□□□□ -0.8
SCN9A-204ENST00000452182 RAB40BQ12829 278 aa10.08□□□□□ -0.8
SCN9A-204ENST00000452182 LAIR2Q6ISS4 152 aa10.08□□□□□ -0.8
SCN9A-204ENST00000452182 TUBA1AQ71U36 451 aa10.08□□□□□ -0.8
SCN9A-204ENST00000452182 DPY19L4Q7Z388 723 aa10.08□□□□□ -0.8
SCN9A-204ENST00000452182 MDP1Q86V88 176 aa10.08□□□□□ -0.8
SCN9A-204ENST00000452182 CDC20BQ86Y33 519 aa10.08□□□□□ -0.8
SCN9A-204ENST00000452182 ALDH16A1Q8IZ83 802 aa10.08□□□□□ -0.8
SCN9A-204ENST00000452182 OR6N2Q8NGY6 317 aa10.08□□□□□ -0.8
SCN9A-204ENST00000452182 OR2AJ1Q8NGZ0 328 aa10.08□□□□□ -0.8
SCN9A-204ENST00000452182 OTOSQ8NHW6 89 aa10.08□□□□□ -0.8
SCN9A-204ENST00000452182 OR2H1Q9GZK4 316 aa10.08□□□□□ -0.8
SCN9A-204ENST00000452182 RNF121Q9H920 327 aa10.08□□□□□ -0.8
SCN9A-204ENST00000452182 NOX3Q9HBY0 568 aa10.08□□□□□ -0.8
SCN9A-204ENST00000452182 PLCXD1Q9NUJ7 323 aa10.08□□□□□ -0.8
SCN9A-204ENST00000452182 ATPIF1Q9UII2 106 aa10.08□□□□□ -0.8
SCN9A-204ENST00000452182 GDF2Q9UK05 429 aaPredicted RBP10.08□□□□□ -0.8
SCN9A-204ENST00000452182 LRRC42Q9Y546 428 aa10.08□□□□□ -0.8
SCN9A-204ENST00000452182 PCDHGB1Q9Y5G3 927 aa10.08□□□□□ -0.8
SCN9A-204ENST00000452182 J3QRE1 110 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 SELENOFO60613 162 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 GOSR1O95249 250 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 PTHP01270 115 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 SERPINA5P05154 406 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 SPARCP09486 303 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 COX5BP10606 129 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 PSKH1P11801 424 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 CRYGSP22914 178 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 NAA10P41227 235 aaPredicted RBP10.07□□□□□ -0.8
SCN9A-204ENST00000452182 SLC15A1P46059 708 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 PSG4Q00888 419 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 PIGFQ07326 219 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 SNTB1Q13884 538 aaKnown RBP10.07□□□□□ -0.8
SCN9A-204ENST00000452182 SMN1Q16637 294 aaKnown RBP10.07□□□□□ -0.8
SCN9A-204ENST00000452182 KLHL22Q53GT1 634 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 PABPC1L2AQ5JQF8 200 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 C6orf141Q5SZD1 244 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 OTPQ5XKR4 325 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 ZSCAN2Q7Z7L9 614 aaPredicted RBP10.07□□□□□ -0.8
SCN9A-204ENST00000452182 IL17RDQ8NFM7 739 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 OR51G2Q8NGK0 314 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 ST7LQ8TDW4 575 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 RNFT2Q96EX2 444 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 CNBD2Q96M20 576 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 WNT5BQ9H1J7 359 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 C1orf198Q9H425 327 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 NPAP1Q9NZP6 1156 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 CRIM1Q9NZV1 1036 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 KCNN3Q9UGI6 736 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 EXOGQ9Y2C4 368 aaKnown RBP10.07□□□□□ -0.8
SCN9A-204ENST00000452182 TMEM14AQ9Y6G1 99 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 IRGMA1A4Y4 181 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 PHYHO14832 338 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 CASKO14936 926 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 RER1O15258 196 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 SGCEO43556 437 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 OR2T7P0C7T2 308 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 ALOX5APP20292 161 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 PTAFRP25105 342 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 ATP6V1E1P36543 226 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 RPS27P42677 84 aaKnown RBP10.07□□□□□ -0.8
SCN9A-204ENST00000452182 NUDT6P53370 316 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 PLP2Q04941 152 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 MED21Q13503 144 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 DAZAP2Q15038 168 aaPredicted RBP10.07□□□□□ -0.8
SCN9A-204ENST00000452182 RAB35Q15286 201 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 CCDC92Q53HC0 331 aaPredicted RBP10.07□□□□□ -0.8
SCN9A-204ENST00000452182 KRT80Q6KB66 452 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 CORO6Q6QEF8 472 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 TMEM108Q6UXF1 575 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 MEX3BQ6ZN04 569 aaKnown RBP10.07□□□□□ -0.8
SCN9A-204ENST00000452182 CFAP77Q6ZQR2 320 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 DCXRQ7Z4W1 244 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 WFDC8Q8IUA0 241 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 ZNF584Q8IVC4 421 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 LINC00346Q8IVM7 164 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 OR2T27Q8NH04 317 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 LGALS12Q96DT0 336 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 ZC3HAV1LQ96H79 300 aaKnown RBP10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms