RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 SLC35F2Q8IXU6 374 aa13.76□□□□□ -0.21
USP40-206ENST00000443711 ALDH16A1Q8IZ83 802 aa13.76□□□□□ -0.21
USP40-206ENST00000443711 ZC3HAV1LQ96H79 300 aaKnown RBP13.76□□□□□ -0.21
USP40-206ENST00000443711 MNTQ99583 582 aa13.76□□□□□ -0.21
USP40-206ENST00000443711 C1QTNF6Q9BXI9 259 aa13.76□□□□□ -0.21
USP40-206ENST00000443711 OR2H1Q9GZK4 316 aa13.76□□□□□ -0.21
USP40-206ENST00000443711 SLC24A3Q9HC58 644 aa13.76□□□□□ -0.21
USP40-206ENST00000443711 PLCXD1Q9NUJ7 323 aa13.76□□□□□ -0.21
USP40-206ENST00000443711 MRPS18AQ9NVS2 196 aaKnown RBP13.76□□□□□ -0.21
USP40-206ENST00000443711 PCDHGB1Q9Y5G3 927 aa13.76□□□□□ -0.21
USP40-206ENST00000443711 TMEM14AQ9Y6G1 99 aa13.76□□□□□ -0.21
USP40-206ENST00000443711 HEATR1Q9H583 2144 aaKnown RBP13.76□□□□□ -0.21
USP40-206ENST00000443711 ANKHD1Q8IWZ3 2542 aaKnown RBP13.75□□□□□ -0.21
USP40-206ENST00000443711 TENM4Q6N022 2769 aa13.75□□□□□ -0.21
USP40-206ENST00000443711 IQCMA0A1B0GVH7 501 aa13.75□□□□□ -0.21
USP40-206ENST00000443711 IRGMA1A4Y4 181 aa13.75□□□□□ -0.21
USP40-206ENST00000443711 SGCEO43556 437 aa13.75□□□□□ -0.21
USP40-206ENST00000443711 FAM20BO75063 409 aa13.75□□□□□ -0.21
USP40-206ENST00000443711 CLDN1O95832 211 aa13.75□□□□□ -0.21
USP40-206ENST00000443711 PTHP01270 115 aa13.75□□□□□ -0.21
USP40-206ENST00000443711 IGFBP2P18065 325 aa13.75□□□□□ -0.21
USP40-206ENST00000443711 RPS27P42677 84 aaKnown RBP13.75□□□□□ -0.21
USP40-206ENST00000443711 PSG4Q00888 419 aa13.75□□□□□ -0.21
USP40-206ENST00000443711 RAB40BQ12829 278 aa13.75□□□□□ -0.21
USP40-206ENST00000443711 EIF2B1Q14232 305 aaKnown RBP13.75□□□□□ -0.21
USP40-206ENST00000443711 C3orf36Q3SXR2 165 aa13.75□□□□□ -0.21
USP40-206ENST00000443711 PABPC1L2AQ5JQF8 200 aa13.75□□□□□ -0.21
USP40-206ENST00000443711 MEX3BQ6ZN04 569 aaKnown RBP13.75□□□□□ -0.21
USP40-206ENST00000443711 DCXRQ7Z4W1 244 aa13.75□□□□□ -0.21
USP40-206ENST00000443711 CDC20BQ86Y33 519 aa13.75□□□□□ -0.21
USP40-206ENST00000443711 DMRTC2Q8IXT2 367 aaPredicted RBP13.75□□□□□ -0.21
USP40-206ENST00000443711 BPIFB6Q8NFQ5 453 aa13.75□□□□□ -0.21
USP40-206ENST00000443711 OTOSQ8NHW6 89 aa13.75□□□□□ -0.21
USP40-206ENST00000443711 FAM222BQ8WU58 562 aa13.75□□□□□ -0.21
USP40-206ENST00000443711 LGALS12Q96DT0 336 aa13.75□□□□□ -0.21
USP40-206ENST00000443711 WNT5BQ9H1J7 359 aa13.75□□□□□ -0.21
USP40-206ENST00000443711 C1orf198Q9H425 327 aa13.75□□□□□ -0.21
USP40-206ENST00000443711 NOX3Q9HBY0 568 aa13.75□□□□□ -0.21
USP40-206ENST00000443711 SCN3BQ9NY72 215 aa13.75□□□□□ -0.21
USP40-206ENST00000443711 LAMP5Q9UJQ1 280 aa13.75□□□□□ -0.21
USP40-206ENST00000443711 GDF2Q9UK05 429 aaPredicted RBP13.75□□□□□ -0.21
USP40-206ENST00000443711 EXOGQ9Y2C4 368 aaKnown RBP13.75□□□□□ -0.21
USP40-206ENST00000443711 SPTAN1Q13813 2472 aaKnown RBP13.74□□□□□ -0.21
USP40-206ENST00000443711 EFCAB10A6NFE3 127 aa13.74□□□□□ -0.21
USP40-206ENST00000443711 ZNF670-ZNF695F2Z2N8 137 aa13.74□□□□□ -0.21
USP40-206ENST00000443711 RER1O15258 196 aa13.74□□□□□ -0.21
USP40-206ENST00000443711 APOL3O95236 402 aa13.74□□□□□ -0.21
USP40-206ENST00000443711 FADS2O95864 444 aaKnown RBP13.74□□□□□ -0.21
USP40-206ENST00000443711 SERPINA5P05154 406 aa13.74□□□□□ -0.21
USP40-206ENST00000443711 OR2T7P0C7T2 308 aa13.74□□□□□ -0.21
USP40-206ENST00000443711 EPXP11678 715 aa13.74□□□□□ -0.21
USP40-206ENST00000443711 SLC15A1P46059 708 aa13.74□□□□□ -0.21
USP40-206ENST00000443711 ZNF83P51522 516 aa13.74□□□□□ -0.21
USP40-206ENST00000443711 HCCSP53701 268 aa13.74□□□□□ -0.21
USP40-206ENST00000443711 RAB39AQ14964 217 aa13.74□□□□□ -0.21
USP40-206ENST00000443711 RAB35Q15286 201 aa13.74□□□□□ -0.21
USP40-206ENST00000443711 CCDC92Q53HC0 331 aaPredicted RBP13.74□□□□□ -0.21
USP40-206ENST00000443711 ZNF774Q6NX45 483 aa13.74□□□□□ -0.21
USP40-206ENST00000443711 OR4F15Q8NGB8 312 aa13.74□□□□□ -0.21
USP40-206ENST00000443711 OR2T27Q8NH04 317 aa13.74□□□□□ -0.21
USP40-206ENST00000443711 AKR7LQ8NHP1 331 aa13.74□□□□□ -0.21
USP40-206ENST00000443711 SMAP2Q8WU79 429 aaPredicted RBP13.74□□□□□ -0.21
USP40-206ENST00000443711 THEM6Q8WUY1 208 aa13.74□□□□□ -0.21
USP40-206ENST00000443711 ZNF75AQ96N20 296 aa13.74□□□□□ -0.21
USP40-206ENST00000443711 SPOCK3Q9BQ16 436 aa13.74□□□□□ -0.21
USP40-206ENST00000443711 ABHD6Q9BV23 337 aa13.74□□□□□ -0.21
USP40-206ENST00000443711 PLEK2Q9NYT0 353 aa13.74□□□□□ -0.21
USP40-206ENST00000443711 CRNNQ9UBG3 495 aaPredicted RBP13.74□□□□□ -0.21
USP40-206ENST00000443711 A1L4Q6 167 aa13.73□□□□□ -0.21
USP40-206ENST00000443711 M0R1B8 84 aa13.73□□□□□ -0.21
USP40-206ENST00000443711 SLC1A7O00341 560 aa13.73□□□□□ -0.21
USP40-206ENST00000443711 PHYHO14832 338 aa13.73□□□□□ -0.21
USP40-206ENST00000443711 XPNPEP2O43895 674 aa13.73□□□□□ -0.21
USP40-206ENST00000443711 DOK2O60496 412 aa13.73□□□□□ -0.21
USP40-206ENST00000443711 IGKV3-15P01624 115 aa13.73□□□□□ -0.21
USP40-206ENST00000443711 IGLV1-44P01699 117 aa13.73□□□□□ -0.21
USP40-206ENST00000443711 LYNP07948 512 aa13.73□□□□□ -0.21
USP40-206ENST00000443711 CCDC159P0C7I6 412 aa13.73□□□□□ -0.21
USP40-206ENST00000443711 COX5BP10606 129 aa13.73□□□□□ -0.21
USP40-206ENST00000443711 PSKH1P11801 424 aa13.73□□□□□ -0.21
USP40-206ENST00000443711 ZNF14P17017 642 aaPredicted RBP13.73□□□□□ -0.21
USP40-206ENST00000443711 ALOX5APP20292 161 aa13.73□□□□□ -0.21
USP40-206ENST00000443711 IDH3GP51553 393 aaPredicted RBP13.73□□□□□ -0.21
USP40-206ENST00000443711 ACTC1P68032 377 aa13.73□□□□□ -0.21
USP40-206ENST00000443711 ACTA1P68133 377 aa13.73□□□□□ -0.21
USP40-206ENST00000443711 ELFN2Q5R3F8 820 aa13.73□□□□□ -0.21
USP40-206ENST00000443711 SP5Q6BEB4 398 aaPredicted RBP13.73□□□□□ -0.21
USP40-206ENST00000443711 TMEM154Q6P9G4 183 aa13.73□□□□□ -0.21
USP40-206ENST00000443711 SEZ6L2Q6UXD5 910 aa13.73□□□□□ -0.21
USP40-206ENST00000443711 CFAP77Q6ZQR2 320 aa13.73□□□□□ -0.21
USP40-206ENST00000443711 VASH1Q7L8A9 365 aaPredicted RBP13.73□□□□□ -0.21
USP40-206ENST00000443711 ACBD4Q8NC06 268 aa13.73□□□□□ -0.21
USP40-206ENST00000443711 OR10H4Q8NGA5 316 aa13.73□□□□□ -0.21
USP40-206ENST00000443711 ST7LQ8TDW4 575 aa13.73□□□□□ -0.21
USP40-206ENST00000443711 ASB17Q8WXJ9 295 aa13.73□□□□□ -0.21
USP40-206ENST00000443711 GGHQ92820 318 aa13.73□□□□□ -0.21
USP40-206ENST00000443711 SLAMF6Q96DU3 332 aa13.73□□□□□ -0.21
USP40-206ENST00000443711 MAP6Q96JE9 813 aa13.73□□□□□ -0.21
USP40-206ENST00000443711 HDHD2Q9H0R4 259 aa13.73□□□□□ -0.21
USP40-206ENST00000443711 FGF20Q9NP95 211 aaPredicted RBP13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms