RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 TEKQ02763 1124 aa16.08■□□□□ 0.16
SHH-204ENST00000441114 GLO1Q04760 184 aa16.08■□□□□ 0.16
SHH-204ENST00000441114 KCNMB1Q16558 191 aa16.08■□□□□ 0.16
SHH-204ENST00000441114 MSMPQ1L6U9 139 aa16.08■□□□□ 0.16
SHH-204ENST00000441114 ACSM5Q6NUN0 579 aa16.08■□□□□ 0.16
SHH-204ENST00000441114 CORO6Q6QEF8 472 aa16.08■□□□□ 0.16
SHH-204ENST00000441114 HIPK1Q86Z02 1210 aa16.08■□□□□ 0.16
SHH-204ENST00000441114 LINC00346Q8IVM7 164 aa16.08■□□□□ 0.16
SHH-204ENST00000441114 OR2T4Q8NH00 348 aa16.08■□□□□ 0.16
SHH-204ENST00000441114 ZNRF4Q8WWF5 429 aa16.08■□□□□ 0.16
SHH-204ENST00000441114 RAB3IPQ96QF0 476 aaPredicted RBP16.08■□□□□ 0.16
SHH-204ENST00000441114 VRK1Q99986 396 aaPredicted RBP16.08■□□□□ 0.16
SHH-204ENST00000441114 SYT3Q9BQG1 590 aa16.08■□□□□ 0.16
SHH-204ENST00000441114 WACQ9BTA9 647 aa16.08■□□□□ 0.16
SHH-204ENST00000441114 MRPL37Q9BZE1 423 aaKnown RBP16.08■□□□□ 0.16
SHH-204ENST00000441114 PAPOLBQ9NRJ5 636 aaKnown RBP16.08■□□□□ 0.16
SHH-204ENST00000441114 PLEK2Q9NYT0 353 aa16.08■□□□□ 0.16
SHH-204ENST00000441114 EIF3KQ9UBQ5 218 aaKnown RBP16.08■□□□□ 0.16
SHH-204ENST00000441114 TVP23AA6NH52 213 aa16.07■□□□□ 0.16
SHH-204ENST00000441114 SNAP29O95721 258 aa16.07■□□□□ 0.16
SHH-204ENST00000441114 CLUP10909 449 aa16.07■□□□□ 0.16
SHH-204ENST00000441114 ZNF3P17036 446 aa16.07■□□□□ 0.16
SHH-204ENST00000441114 RAD52P43351 418 aa16.07■□□□□ 0.16
SHH-204ENST00000441114 HTR5AP47898 357 aa16.07■□□□□ 0.16
SHH-204ENST00000441114 UCP2P55851 309 aa16.07■□□□□ 0.16
SHH-204ENST00000441114 RPS23P62266 143 aaKnown RBP16.07■□□□□ 0.16
SHH-204ENST00000441114 EFNB3Q15768 340 aa16.07■□□□□ 0.16
SHH-204ENST00000441114 TMEM236Q5W0B7 351 aa16.07■□□□□ 0.16
SHH-204ENST00000441114 RGS7BPQ6MZT1 257 aaPredicted RBP16.07■□□□□ 0.16
SHH-204ENST00000441114 SLC27A4Q6P1M0 643 aa16.07■□□□□ 0.16
SHH-204ENST00000441114 LRP11Q86VZ4 500 aa16.07■□□□□ 0.16
SHH-204ENST00000441114 SLC26A10Q8NG04 563 aa16.07■□□□□ 0.16
SHH-204ENST00000441114 MRPL24Q96A35 216 aaKnown RBP16.07■□□□□ 0.16
SHH-204ENST00000441114 CDADC1Q9BWV3 514 aa16.07■□□□□ 0.16
SHH-204ENST00000441114 MED20Q9H944 212 aa16.07■□□□□ 0.16
SHH-204ENST00000441114 CMC2Q9NRP2 79 aa16.07■□□□□ 0.16
SHH-204ENST00000441114 DUSP13Q9UII6 198 aa16.07■□□□□ 0.16
SHH-204ENST00000441114 ARFGEF3Q5TH69 2177 aa16.07■□□□□ 0.16
SHH-204ENST00000441114 RTTNQ86VV8 2226 aa16.06■□□□□ 0.16
SHH-204ENST00000441114 TMEM129A0AVI4 362 aa16.06■□□□□ 0.16
SHH-204ENST00000441114 FAM183AA6NL82 134 aa16.06■□□□□ 0.16
SHH-204ENST00000441114 RER1O15258 196 aa16.06■□□□□ 0.16
SHH-204ENST00000441114 SSX4O60224 188 aa16.06■□□□□ 0.16
SHH-204ENST00000441114 MITFO75030 526 aaPredicted RBP16.06■□□□□ 0.16
SHH-204ENST00000441114 CD99P14209 185 aa16.06■□□□□ 0.16
SHH-204ENST00000441114 ZNF823P16415 610 aa16.06■□□□□ 0.16
SHH-204ENST00000441114 CCDC92Q53HC0 331 aaPredicted RBP16.06■□□□□ 0.16
SHH-204ENST00000441114 FAHD1Q6P587 224 aa16.06■□□□□ 0.16
SHH-204ENST00000441114 TMEM154Q6P9G4 183 aa16.06■□□□□ 0.16
SHH-204ENST00000441114 LYPD4Q6UWN0 246 aa16.06■□□□□ 0.16
SHH-204ENST00000441114 PRSS57Q6UWY2 283 aa16.06■□□□□ 0.16
SHH-204ENST00000441114 VASH1Q7L8A9 365 aaPredicted RBP16.06■□□□□ 0.16
SHH-204ENST00000441114 ZDHHC13Q8IUH4 622 aa16.06■□□□□ 0.16
SHH-204ENST00000441114 OR1J1Q8NGS3 322 aa16.06■□□□□ 0.16
SHH-204ENST00000441114 SLC7A6Q92536 515 aa16.06■□□□□ 0.16
SHH-204ENST00000441114 RBM4Q9BWF3 364 aaKnown RBP16.06■□□□□ 0.16
SHH-204ENST00000441114 DYNLRB1Q9NP97 96 aa16.06■□□□□ 0.16
SHH-204ENST00000441114 KRT84Q9NSB2 600 aa16.06■□□□□ 0.16
SHH-204ENST00000441114 MRPL22Q9NWU5 206 aaKnown RBP16.06■□□□□ 0.16
SHH-204ENST00000441114 NDRG4Q9ULP0 352 aaKnown RBP16.06■□□□□ 0.16
SHH-204ENST00000441114 LHFPL6Q9Y693 200 aa16.06■□□□□ 0.16
SHH-204ENST00000441114 SAC3D1A6NKF1 404 aa16.05■□□□□ 0.16
SHH-204ENST00000441114 H7C417 338 aa16.05■□□□□ 0.16
SHH-204ENST00000441114 SPI1P17947 270 aa16.05■□□□□ 0.16
SHH-204ENST00000441114 WNT5AP41221 380 aa16.05■□□□□ 0.16
SHH-204ENST00000441114 NUDT6P53370 316 aa16.05■□□□□ 0.16
SHH-204ENST00000441114 CRISP1P54107 249 aa16.05■□□□□ 0.16
SHH-204ENST00000441114 CDK5Q00535 292 aa16.05■□□□□ 0.16
SHH-204ENST00000441114 CLEC12BQ2HXU8 276 aa16.05■□□□□ 0.16
SHH-204ENST00000441114 ALKBH6Q3KRA9 238 aa16.05■□□□□ 0.16
SHH-204ENST00000441114 SPATA46Q5T0L3 261 aa16.05■□□□□ 0.16
SHH-204ENST00000441114 ZCCHC24Q8N2G6 241 aaKnown RBP16.05■□□□□ 0.16
SHH-204ENST00000441114 GJC3Q8NFK1 279 aa16.05■□□□□ 0.16
SHH-204ENST00000441114 OR6K6Q8NGW6 343 aa16.05■□□□□ 0.16
SHH-204ENST00000441114 OR2AJ1Q8NGZ0 328 aa16.05■□□□□ 0.16
SHH-204ENST00000441114 ABHD4Q8TB40 342 aa16.05■□□□□ 0.16
SHH-204ENST00000441114 DNAJC9Q8WXX5 260 aa16.05■□□□□ 0.16
SHH-204ENST00000441114 CENPNQ96H22 339 aaPredicted RBP16.05■□□□□ 0.16
SHH-204ENST00000441114 DOK1Q99704 481 aa16.05■□□□□ 0.16
SHH-204ENST00000441114 PKP2Q99959 881 aa16.05■□□□□ 0.16
SHH-204ENST00000441114 BCL2L14Q9BZR8 327 aa16.05■□□□□ 0.16
SHH-204ENST00000441114 BARX1Q9HBU1 254 aaPredicted RBP16.05■□□□□ 0.16
SHH-204ENST00000441114 GRIP1Q9Y3R0 1128 aa16.05■□□□□ 0.16
SHH-204ENST00000441114 A0A1W2PPW3 197 aa16.04■□□□□ 0.16
SHH-204ENST00000441114 TRIM64A6NGJ6 449 aa16.04■□□□□ 0.16
SHH-204ENST00000441114 TRIM64BA6NI03 449 aa16.04■□□□□ 0.16
SHH-204ENST00000441114 LY6HO94772 140 aa16.04■□□□□ 0.16
SHH-204ENST00000441114 CLPTM1O96005 669 aa16.04■□□□□ 0.16
SHH-204ENST00000441114 COX5BP10606 129 aa16.04■□□□□ 0.16
SHH-204ENST00000441114 PCSK6P29122 969 aa16.04■□□□□ 0.16
SHH-204ENST00000441114 FMO3P31513 532 aa16.04■□□□□ 0.16
SHH-204ENST00000441114 RPS27P42677 84 aaKnown RBP16.04■□□□□ 0.16
SHH-204ENST00000441114 SLC25A1P53007 311 aa16.04■□□□□ 0.16
SHH-204ENST00000441114 ZNF101Q8IZC7 436 aa16.04■□□□□ 0.16
SHH-204ENST00000441114 ZNF511Q8NB15 262 aa16.04■□□□□ 0.16
SHH-204ENST00000441114 OR1F12Q8NHA8 337 aa16.04■□□□□ 0.16
SHH-204ENST00000441114 SYNPRQ8TBG9 265 aa16.04■□□□□ 0.16
SHH-204ENST00000441114 PLEKHA8Q96JA3 519 aa16.04■□□□□ 0.16
SHH-204ENST00000441114 C4orf45Q96LM5 186 aa16.04■□□□□ 0.16
SHH-204ENST00000441114 SORCS2Q96PQ0 1159 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms