RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 C1QL3Q5VWW1 255 aa10.16□□□□□ -0.78
USP4-205ENST00000431357 OR7E24Q6IFN5 339 aa10.16□□□□□ -0.78
USP4-205ENST00000431357 LPCAT3Q6P1A2 487 aa10.16□□□□□ -0.78
USP4-205ENST00000431357 POMZP3Q6PJE2 187 aa10.16□□□□□ -0.78
USP4-205ENST00000431357 DNM1P34Q6PK57 102 aa10.16□□□□□ -0.78
USP4-205ENST00000431357 TTLL10Q6ZVT0 673 aa10.16□□□□□ -0.78
USP4-205ENST00000431357 GRINAQ7Z429 371 aa10.16□□□□□ -0.78
USP4-205ENST00000431357 HSD17B13Q7Z5P4 300 aaPredicted RBP10.16□□□□□ -0.78
USP4-205ENST00000431357 ADGRE4PQ86SQ3 457 aa10.16□□□□□ -0.78
USP4-205ENST00000431357 PDZD9Q8IXQ8 264 aa10.16□□□□□ -0.78
USP4-205ENST00000431357 OR5T2Q8NGG2 359 aa10.16□□□□□ -0.78
USP4-205ENST00000431357 OR52N5Q8NH56 324 aa10.16□□□□□ -0.78
USP4-205ENST00000431357 COQ8AQ8NI60 647 aa10.16□□□□□ -0.78
USP4-205ENST00000431357 TSLPQ969D9 159 aa10.16□□□□□ -0.78
USP4-205ENST00000431357 FOXRED1Q96CU9 486 aaPredicted RBP10.16□□□□□ -0.78
USP4-205ENST00000431357 SPOCK3Q9BQ16 436 aa10.16□□□□□ -0.78
USP4-205ENST00000431357 ZNF416Q9BWM5 594 aa10.16□□□□□ -0.78
USP4-205ENST00000431357 RTN4RQ9BZR6 473 aa10.16□□□□□ -0.78
USP4-205ENST00000431357 SLC2A4RGQ9NR83 387 aa10.16□□□□□ -0.78
USP4-205ENST00000431357 HHLA2Q9UM44 414 aa10.16□□□□□ -0.78
USP4-205ENST00000431357 R4GMQ9 66 aa10.16□□□□□ -0.78
USP4-205ENST00000431357 TCRBV16S1A1N1A0A5B0 115 aa10.15□□□□□ -0.78
USP4-205ENST00000431357 A6NIZ1 184 aa10.15□□□□□ -0.78
USP4-205ENST00000431357 OR6C76A6NM76 312 aa10.15□□□□□ -0.78
USP4-205ENST00000431357 A8MXK9 166 aa10.15□□□□□ -0.78
USP4-205ENST00000431357 PLPP3O14495 311 aa10.15□□□□□ -0.78
USP4-205ENST00000431357 AHSA1O95433 338 aa10.15□□□□□ -0.78
USP4-205ENST00000431357 PLGP00747 810 aaPredicted RBP10.15□□□□□ -0.78
USP4-205ENST00000431357 ISG15P05161 165 aa10.15□□□□□ -0.78
USP4-205ENST00000431357 OR4E1P0C645 316 aa10.15□□□□□ -0.78
USP4-205ENST00000431357 NME1P15531 152 aaKnown RBP10.15□□□□□ -0.78
USP4-205ENST00000431357 DNASE1L1P49184 302 aa10.15□□□□□ -0.78
USP4-205ENST00000431357 ARHGDIBP52566 201 aa10.15□□□□□ -0.78
USP4-205ENST00000431357 GFERP55789 205 aa10.15□□□□□ -0.78
USP4-205ENST00000431357 RAP1BP61224 184 aa10.15□□□□□ -0.78
USP4-205ENST00000431357 RAP1AP62834 184 aa10.15□□□□□ -0.78
USP4-205ENST00000431357 RELQ04864 619 aaPredicted RBP10.15□□□□□ -0.78
USP4-205ENST00000431357 RAB30Q15771 203 aa10.15□□□□□ -0.78
USP4-205ENST00000431357 ASPHD2Q6ICH7 369 aa10.15□□□□□ -0.78
USP4-205ENST00000431357 ALKAL2Q6UX46 152 aa10.15□□□□□ -0.78
USP4-205ENST00000431357 CHRDL2Q6WN34 429 aa10.15□□□□□ -0.78
USP4-205ENST00000431357 ZNF627Q7L945 461 aa10.15□□□□□ -0.78
USP4-205ENST00000431357 SLC29A4Q7RTT9 530 aa10.15□□□□□ -0.78
USP4-205ENST00000431357 C17orf82Q86X59 251 aaPredicted RBP10.15□□□□□ -0.78
USP4-205ENST00000431357 EIF4E3Q8N5X7 224 aaKnown RBP10.15□□□□□ -0.78
USP4-205ENST00000431357 PLPP7Q8NBV4 271 aa10.15□□□□□ -0.78
USP4-205ENST00000431357 ZNF248Q8NDW4 579 aa10.15□□□□□ -0.78
USP4-205ENST00000431357 OR8S1Q8NH09 359 aa10.15□□□□□ -0.78
USP4-205ENST00000431357 LMX1AQ8TE12 382 aa10.15□□□□□ -0.78
USP4-205ENST00000431357 FBXW5Q969U6 566 aa10.15□□□□□ -0.78
USP4-205ENST00000431357 SLC25A44Q96H78 314 aaPredicted RBP10.15□□□□□ -0.78
USP4-205ENST00000431357 MFFQ9GZY8 342 aa10.15□□□□□ -0.78
USP4-205ENST00000431357 POFUT1Q9H488 388 aa10.15□□□□□ -0.78
USP4-205ENST00000431357 TAS2R4Q9NYW5 299 aa10.15□□□□□ -0.78
USP4-205ENST00000431357 COPS7AQ9UBW8 275 aa10.15□□□□□ -0.78
USP4-205ENST00000431357 LRP12Q9Y561 859 aa10.15□□□□□ -0.78
USP4-205ENST00000431357 LAMA3Q16787 3333 aa10.15□□□□□ -0.78
USP4-205ENST00000431357 MPDZO75970 2070 aa10.15□□□□□ -0.78
USP4-205ENST00000431357 A0A0D9SG52 128 aa10.15□□□□□ -0.79
USP4-205ENST00000431357 MEIS3P1A6NDR6 274 aa10.15□□□□□ -0.79
USP4-205ENST00000431357 LDLRAD4O15165 306 aa10.15□□□□□ -0.79
USP4-205ENST00000431357 SSX5O60225 188 aa10.15□□□□□ -0.79
USP4-205ENST00000431357 DOK2O60496 412 aa10.15□□□□□ -0.79
USP4-205ENST00000431357 CYB5AP00167 134 aa10.15□□□□□ -0.79
USP4-205ENST00000431357 CD74P04233 296 aa10.15□□□□□ -0.79
USP4-205ENST00000431357 UBBP0CG47 229 aa10.15□□□□□ -0.79
USP4-205ENST00000431357 UBCP0CG48 685 aaKnown RBP10.15□□□□□ -0.79
USP4-205ENST00000431357 CTLA4P16410 223 aa10.15□□□□□ -0.79
USP4-205ENST00000431357 POU3F2P20265 443 aaPredicted RBP10.15□□□□□ -0.79
USP4-205ENST00000431357 RAB6AP20340 208 aa10.15□□□□□ -0.79
USP4-205ENST00000431357 OR1D4P47884 311 aa10.15□□□□□ -0.79
USP4-205ENST00000431357 RPS27AP62979 156 aaKnown RBP10.15□□□□□ -0.79
USP4-205ENST00000431357 UBA52P62987 128 aaKnown RBP10.15□□□□□ -0.79
USP4-205ENST00000431357 OC90Q02509 493 aaPredicted RBP10.15□□□□□ -0.79
USP4-205ENST00000431357 SRSF4Q08170 494 aaKnown RBP10.15□□□□□ -0.79
USP4-205ENST00000431357 MFGE8Q08431 387 aaPredicted RBP10.15□□□□□ -0.79
USP4-205ENST00000431357 KCNAB1Q14722 419 aa10.15□□□□□ -0.79
USP4-205ENST00000431357 MEF2DQ14814 521 aa10.15□□□□□ -0.79
USP4-205ENST00000431357 C1orf100Q5SVJ3 147 aa10.15□□□□□ -0.79
USP4-205ENST00000431357 GLYATL3Q5SZD4 288 aa10.15□□□□□ -0.79
USP4-205ENST00000431357 TMEM244Q5VVB8 128 aa10.15□□□□□ -0.79
USP4-205ENST00000431357 DCAF12L2Q5VW00 463 aa10.15□□□□□ -0.79
USP4-205ENST00000431357 DEGS2Q6QHC5 323 aa10.15□□□□□ -0.79
USP4-205ENST00000431357 C9orf40Q8IXQ3 194 aa10.15□□□□□ -0.79
USP4-205ENST00000431357 CARFQ8N187 725 aa10.15□□□□□ -0.79
USP4-205ENST00000431357 NKAIN3Q8N8D7 197 aa10.15□□□□□ -0.79
USP4-205ENST00000431357 OR5M9Q8NGP3 310 aa10.15□□□□□ -0.79
USP4-205ENST00000431357 GPR119Q8TDV5 335 aa10.15□□□□□ -0.79
USP4-205ENST00000431357 DVL3Q92997 716 aaPredicted RBP10.15□□□□□ -0.79
USP4-205ENST00000431357 CXorf58Q96LI9 332 aa10.15□□□□□ -0.79
USP4-205ENST00000431357 LINC00052Q96N35 136 aa10.15□□□□□ -0.79
USP4-205ENST00000431357 WWTR1Q9GZV5 400 aa10.15□□□□□ -0.79
USP4-205ENST00000431357 TP53BP1Q12888 1972 aaPredicted RBP10.14□□□□□ -0.79
USP4-205ENST00000431357 LOC390937A0A1W2PQ73 354 aa10.14□□□□□ -0.79
USP4-205ENST00000431357 TMEM200CA6NKL6 621 aa10.14□□□□□ -0.79
USP4-205ENST00000431357 DISC1C4P0D8 188 aa10.14□□□□□ -0.79
USP4-205ENST00000431357 GMFGO60234 142 aa10.14□□□□□ -0.79
USP4-205ENST00000431357 SRSF10O75494 262 aaKnown RBP10.14□□□□□ -0.79
USP4-205ENST00000431357 CD8AP01732 235 aa10.14□□□□□ -0.79
USP4-205ENST00000431357 FGF2P09038 288 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms