RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 GIN1Q9NXP7 522 aa3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 B3GNT2Q9NY97 397 aa3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 RCL1Q9Y2P8 373 aaKnown RBP3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 PPIL1Q9Y3C6 166 aa3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 L3MBTL1Q9Y468 752 aa3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 FLVCR1Q9Y5Y0 555 aa3.94□□□□□ -1.78
CCDC88A-206ENST00000430086 COL16A1Q07092 1604 aaPredicted RBP3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 LOC100131303A0A0U1RQF7 123 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 A0A1B0GWB2 263 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 SMIM23A6NLE4 172 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 ZFP92A6NM28 416 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 USP27XA6NNY8 438 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 F8VP50 259 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 H3BN98 237 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 DCTN6O00399 190 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 COCHO43405 550 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 CLDN11O75508 207 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 SC5DO75845 299 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 ATP5HO75947 161 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 IGHV2-5P01817 119 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 TCN1P20061 433 aaPredicted RBP3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 DRD3P35462 400 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 AQP2P41181 271 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 RANBP1P43487 201 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 GSSP48637 474 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 TAS2R60P59551 318 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 RPS14P62263 151 aaKnown RBP3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 BASP1P80723 227 aaKnown RBP3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 SLAMF1Q13291 335 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 GNA13Q14344 377 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 OR4D1Q15615 310 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 TNXAQ16473 311 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 RGS21Q2M5E4 152 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 PARP15Q460N3 678 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 MARCH8Q5T0T0 291 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 FAM151BQ6UXP7 276 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 MBOAT1Q6ZNC8 495 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 DCXRQ7Z4W1 244 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 ZNF740Q8NDX6 193 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 OR56B4Q8NH76 319 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 LINC01006Q8NI28 216 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 TBX15Q96SF7 602 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 MCHR1Q99705 422 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 UTP23Q9BRU9 249 aaKnown RBP3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 COPS4Q9BT78 406 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 NAT9Q9BTE0 207 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 SHCBP1LQ9BZQ2 653 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 SLC38A1Q9H2H9 487 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 FOLH1BQ9HBA9 442 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 CLN6Q9NWW5 311 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 KCNIP1Q9NZI2 227 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 CLEC2DQ9UHP7 191 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 RIMS3Q9UJD0 308 aa3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 USP42Q9H9J4 1324 aaKnown RBP3.93□□□□□ -1.78
CCDC88A-206ENST00000430086 GLYATL1P3A0A0U1RQE8 302 aa3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 MKRN2OSH3BPM6 223 aa3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 MRPS12O15235 138 aaKnown RBP3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 EMC8O43402 210 aa3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 SULT1B1O43704 296 aa3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 PET100P0DJ07 73 aa3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 CALM1P0DP23 149 aa3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 CALM2P0DP24 149 aa3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 CALM3P0DP25 149 aa3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 GFAPP14136 432 aa3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 ATP6V1B2P21281 511 aa3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 OR1E1P30953 314 aa3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 KDELR2P33947 212 aa3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 NBL1P41271 181 aa3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 RPL29P47914 159 aaKnown RBP3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 EMP2P54851 167 aa3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 SLC35B1P78383 322 aa3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 PITPNAQ00169 270 aa3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 UAP1Q16222 522 aaPredicted RBP3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 PRR4Q16378 134 aa3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 C5orf64Q2M2E5 130 aa3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 Q6ZN92 141 aa3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 SETD3Q86TU7 594 aaPredicted RBP3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 TMEM135Q86UB9 458 aa3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 UNC93AQ86WB7 457 aa3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 LRRC6Q86X45 466 aa3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 CADM2Q8N3J6 435 aa3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 KIF2BQ8N4N8 673 aa3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 PRELID2Q8N945 189 aa3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 ING5Q8WYH8 240 aa3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 NDRG1Q92597 394 aaKnown RBP3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 FGF11Q92914 225 aa3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 DNAJC1Q96KC8 554 aaKnown RBP3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 SERPINB12Q96P63 405 aa3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 CIB1Q99828 191 aa3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 DCUN1D5Q9BTE7 237 aa3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 CALN1Q9BXU9 219 aa3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 ACTR6Q9GZN1 396 aa3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 NEUROG2Q9H2A3 272 aa3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 C1orf198Q9H425 327 aa3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 VAPAQ9P0L0 249 aa3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 HMGXB4Q9UGU5 601 aa3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 NXT1Q9UKK6 140 aaKnown RBP3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 ING4Q9UNL4 249 aa3.92□□□□□ -1.78
CCDC88A-206ENST00000430086 CNTNAP1P78357 1384 aa3.91□□□□□ -1.78
CCDC88A-206ENST00000430086 TNRQ92752 1358 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms