RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 ZNF724A8MTY0 619 aa7.48□□□□□ -1.21
USP54-203ENST00000418501 CTDSP2O14595 271 aa7.48□□□□□ -1.21
USP54-203ENST00000418501 ZNF354AO60765 605 aaPredicted RBP7.48□□□□□ -1.21
USP54-203ENST00000418501 DHFRP00374 187 aa7.48□□□□□ -1.21
USP54-203ENST00000418501 RCVRNP35243 200 aa7.48□□□□□ -1.21
USP54-203ENST00000418501 DEFB109BQ30KR1 87 aa7.48□□□□□ -1.21
USP54-203ENST00000418501 RSBN1Q5VWQ0 802 aaPredicted RBP7.48□□□□□ -1.21
USP54-203ENST00000418501 RTL6Q6ICC9 239 aa7.48□□□□□ -1.21
USP54-203ENST00000418501 UNQ9370/PRO34162Q6UXP9 181 aa7.48□□□□□ -1.21
USP54-203ENST00000418501 CDH26Q8IXH8 852 aa7.48□□□□□ -1.21
USP54-203ENST00000418501 Q8N402 240 aa7.48□□□□□ -1.21
USP54-203ENST00000418501 PRSS33Q8NF86 280 aa7.48□□□□□ -1.21
USP54-203ENST00000418501 KLHL13Q9P2N7 655 aa7.48□□□□□ -1.21
USP54-203ENST00000418501 STEAP1Q9UHE8 339 aa7.48□□□□□ -1.21
USP54-203ENST00000418501 IL17BQ9UHF5 180 aa7.48□□□□□ -1.21
USP54-203ENST00000418501 LRP12Q9Y561 859 aa7.48□□□□□ -1.21
USP54-203ENST00000418501 TRANK1O15050 2925 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 FAM240BA0A1B0GVZ2 78 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 OR6C6A6NF89 314 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 PROB1E7EW31 1015 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 CNN3Q15417 329 aaKnown RBP7.47□□□□□ -1.21
USP54-203ENST00000418501 ELFN2Q5R3F8 820 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 DTX1Q86Y01 620 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 C20orf196Q8IYI0 205 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 OR5L1Q8NGL2 311 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 TECTBQ96PL2 329 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 HIST1H2AAQ96QV6 131 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 SLCO5A1Q9H2Y9 848 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 ZNF703Q9H7S9 590 aaPredicted RBP7.47□□□□□ -1.21
USP54-203ENST00000418501 FAM86C1Q9NVL1 165 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 N6AMT1Q9Y5N5 214 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 ORC5O43913 435 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 CYTIPO60759 359 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 SERPINA5P05154 406 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 PTGS2P35354 604 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 PTGER4P35408 488 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 HCCSP53701 268 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 MRPS15P82914 257 aaKnown RBP7.47□□□□□ -1.21
USP54-203ENST00000418501 TCF15Q12870 199 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 HYAL4Q2M3T9 481 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 TOMM5Q8N4H5 51 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 JAGN1Q8N5M9 183 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 FCAMRQ8WWV6 532 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 TXNDC15Q96J42 360 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 DERL3Q96Q80 235 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 ATF6BQ99941 703 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 URM1Q9BTM9 101 aaKnown RBP7.47□□□□□ -1.21
USP54-203ENST00000418501 LINC00470Q9BZP3 86 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 SLC7A11Q9UPY5 501 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 MRPS7Q9Y2R9 242 aaKnown RBP7.47□□□□□ -1.21
USP54-203ENST00000418501 OR4C45A6NMZ5 311 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 TPD52L2O43399 206 aaKnown RBP7.47□□□□□ -1.21
USP54-203ENST00000418501 SGCEO43556 437 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 CYB5AP00167 134 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 ISG15P05161 165 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 PRKACBP22694 351 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 TGM1P22735 817 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 EVX1P49640 407 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 CEP78Q5JTW2 689 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 DRAM2Q6UX65 266 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 CATSPERDQ86XM0 798 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 PDCD1LG2Q9BQ51 273 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 ACTR6Q9GZN1 396 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 PLA2G3Q9NZ20 509 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 NUFIP1Q9UHK0 495 aaKnown RBP7.47□□□□□ -1.21
USP54-203ENST00000418501 ATPIF1Q9UII2 106 aa7.47□□□□□ -1.21
USP54-203ENST00000418501 AK6Q9Y3D8 172 aaKnown RBP7.47□□□□□ -1.21
USP54-203ENST00000418501 BPNT1O95861 308 aa7.46□□□□□ -1.21
USP54-203ENST00000418501 HOXD4P09016 255 aaPredicted RBP7.46□□□□□ -1.21
USP54-203ENST00000418501 INHBBP09529 407 aa7.46□□□□□ -1.21
USP54-203ENST00000418501 BDKRB2P30411 391 aa7.46□□□□□ -1.21
USP54-203ENST00000418501 C11orf88Q6PI97 169 aa7.46□□□□□ -1.21
USP54-203ENST00000418501 MFSD4AQ8N468 514 aa7.46□□□□□ -1.21
USP54-203ENST00000418501 ZPLD1Q8TCW7 415 aa7.46□□□□□ -1.21
USP54-203ENST00000418501 RELTQ969Z4 430 aa7.46□□□□□ -1.21
USP54-203ENST00000418501 DACT3Q96B18 629 aaPredicted RBP7.46□□□□□ -1.21
USP54-203ENST00000418501 OR2M2Q96R28 347 aa7.46□□□□□ -1.21
USP54-203ENST00000418501 MRPL13Q9BYD1 178 aaKnown RBP7.46□□□□□ -1.21
USP54-203ENST00000418501 TRBV5-5A0A0J9YX44 114 aa7.46□□□□□ -1.22
USP54-203ENST00000418501 SLC22A20A6NK97 555 aa7.46□□□□□ -1.22
USP54-203ENST00000418501 IFITM5A6NNB3 132 aa7.46□□□□□ -1.22
USP54-203ENST00000418501 PSMD9O00233 223 aa7.46□□□□□ -1.22
USP54-203ENST00000418501 ZFPL1O95159 310 aa7.46□□□□□ -1.22
USP54-203ENST00000418501 YES1P07947 543 aa7.46□□□□□ -1.22
USP54-203ENST00000418501 Q0VFX4 171 aa7.46□□□□□ -1.22
USP54-203ENST00000418501 TMEM69Q5SWH9 247 aa7.46□□□□□ -1.22
USP54-203ENST00000418501 FAM27BQ5VT28 67 aa7.46□□□□□ -1.22
USP54-203ENST00000418501 ZNF813Q6ZN06 617 aa7.46□□□□□ -1.22
USP54-203ENST00000418501 LINGO2Q7L985 606 aa7.46□□□□□ -1.22
USP54-203ENST00000418501 SLC22A24Q8N4F4 322 aa7.46□□□□□ -1.22
USP54-203ENST00000418501 TMEM251Q8N6I4 163 aa7.46□□□□□ -1.22
USP54-203ENST00000418501 ZFP62Q8NB50 900 aaPredicted RBP7.46□□□□□ -1.22
USP54-203ENST00000418501 SNRNP27Q8WVK2 155 aaKnown RBP7.46□□□□□ -1.22
USP54-203ENST00000418501 FAM46BQ96A09 425 aa7.46□□□□□ -1.22
USP54-203ENST00000418501 PGLYRP3Q96LB9 341 aa7.46□□□□□ -1.22
USP54-203ENST00000418501 SMAD5Q99717 465 aaKnown RBP7.46□□□□□ -1.22
USP54-203ENST00000418501 PBOV1Q9GZY1 135 aa7.46□□□□□ -1.22
USP54-203ENST00000418501 TMEM138Q9NPI0 162 aa7.46□□□□□ -1.22
USP54-203ENST00000418501 ASH2LQ9UBL3 628 aa7.46□□□□□ -1.22
USP54-203ENST00000418501 EIF3KQ9UBQ5 218 aaKnown RBP7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms