RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 FAM189BP81408 668 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 EXOSC7Q15024 291 aaKnown RBP5.58□□□□□ -1.52
SCN1A-203ENST00000409050 CDK5R1Q15078 307 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 SURF2Q15527 256 aaPredicted RBP5.58□□□□□ -1.52
SCN1A-203ENST00000409050 ZNF425Q6IV72 752 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 WDR73Q6P4I2 378 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 POFUT1Q9H488 388 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 NTN4Q9HB63 628 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 VSX1Q9NZR4 365 aaPredicted RBP5.58□□□□□ -1.52
SCN1A-203ENST00000409050 ZNF142P52746 1687 aaPredicted RBP5.58□□□□□ -1.52
SCN1A-203ENST00000409050 ELOA3CA0A087WX78 387 aaPredicted RBP5.58□□□□□ -1.52
SCN1A-203ENST00000409050 IFITM5A6NNB3 132 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 SEC14L6B5MCN3 397 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 FAM227AF5H4B4 570 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 CHEK1O14757 476 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 CTSLP07711 333 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 RRASP10301 218 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 PTHLHP12272 177 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 ABOP16442 354 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 LIPAP38571 399 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 PFN3P60673 137 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 HTRA4P83105 476 aaPredicted RBP5.58□□□□□ -1.52
SCN1A-203ENST00000409050 FAM53BQ14153 422 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 CLRN3Q8NCR9 226 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 TOE1Q96GM8 510 aaKnown RBP5.58□□□□□ -1.52
SCN1A-203ENST00000409050 TRIB1Q96RU8 372 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 TXNIPQ9H3M7 391 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 AKIP1Q9NQ31 210 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 SLC2A9Q9NRM0 540 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 ZNF275Q9NSD4 429 aaPredicted RBP5.58□□□□□ -1.52
SCN1A-203ENST00000409050 TMED3Q9Y3Q3 217 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 RFPL4AA6NLU0 287 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 RFPL4AL1F8VTS6 287 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 BET1O15155 118 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 XRCC3O43542 346 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 CNMDO75829 334 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 RPL12P30050 165 aaKnown RBP5.58□□□□□ -1.52
SCN1A-203ENST00000409050 ASCL1P50553 236 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 IQCJQ1A5X6 159 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 MED25Q71SY5 747 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 ANGPTL5Q86XS5 388 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 OR2AK2Q8NG84 335 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 NT5CQ8TCD5 201 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 RHBDD1Q8TEB9 315 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 NPRL2Q8WTW4 380 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 TEX101Q9BY14 249 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 CHST8Q9H2A9 424 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 RNF186Q9NXI6 227 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 MED16Q9Y2X0 877 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 OR5H14A6NHG9 310 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 LDB3O75112 727 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 ABLIM3O94929 683 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 TSPAN12O95859 305 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 F11P03951 625 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 ACSM4P0C7M7 580 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 ETV5P41161 510 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 CD300LDQ6UXZ3 194 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 SLC7A5P1Q8MH63 180 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 ST8SIA4Q92187 359 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 C10orf35Q96D05 121 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 PIK3IP1Q96FE7 263 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 WDR61Q9GZS3 305 aaKnown RBP5.58□□□□□ -1.52
SCN1A-203ENST00000409050 NXF5Q9H1B4 397 aaKnown RBP5.58□□□□□ -1.52
SCN1A-203ENST00000409050 SPNS1Q9H2V7 528 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 SMDT1Q9H4I9 107 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 RAB18Q9NP72 206 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 ZNF346Q9UL40 294 aaKnown RBP5.58□□□□□ -1.52
SCN1A-203ENST00000409050 HRH3Q9Y5N1 445 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 ZNF724A8MTY0 619 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 B4DEV8 164 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 M0QZK8 103 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 SMAD6O43541 496 aaKnown RBP5.58□□□□□ -1.52
SCN1A-203ENST00000409050 GGCTO75223 188 aaKnown RBP5.58□□□□□ -1.52
SCN1A-203ENST00000409050 NPPBP16860 134 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 FPR2P25090 351 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 GABRA2P47869 451 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 TM4SF4P48230 202 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 SUMO1P63165 101 aaKnown RBP5.58□□□□□ -1.52
SCN1A-203ENST00000409050 SRYQ05066 204 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 RPUSD3Q6P087 351 aaKnown RBP5.58□□□□□ -1.52
SCN1A-203ENST00000409050 ESPNLQ6ZVH7 1005 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 RIMKLAQ8IXN7 391 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 SAT2Q96F10 170 aaPredicted RBP5.58□□□□□ -1.52
SCN1A-203ENST00000409050 C14orf79Q96F83 325 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 RAB40CQ96S21 281 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 NMNAT3Q96T66 252 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 EDEM2Q9BV94 578 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 SLC46A2Q9BY10 475 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 IFT22Q9H7X7 185 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 GALNT9Q9HCQ5 603 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 FBXO34Q9NWN3 711 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 KIAA1456Q9P272 454 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 DAPP1Q9UN19 280 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 GABRQQ9UN88 632 aa5.58□□□□□ -1.52
SCN1A-203ENST00000409050 TRBV5-4A0A0C4DH59 114 aa5.57□□□□□ -1.52
SCN1A-203ENST00000409050 A0A1B0GV50 99 aa5.57□□□□□ -1.52
SCN1A-203ENST00000409050 OR5H15A6NDH6 313 aa5.57□□□□□ -1.52
SCN1A-203ENST00000409050 OR5H1A6NKK0 313 aa5.57□□□□□ -1.52
SCN1A-203ENST00000409050 ZNF727A8MUV8 499 aa5.57□□□□□ -1.52
SCN1A-203ENST00000409050 FAM171A2A8MVW0 826 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms