RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 CABLES2Q9BTV7 478 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 C11orf49Q9H6J7 331 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 TAS2R4Q9NYW5 299 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 CA14Q9ULX7 337 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 RP1P56715 2156 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 MYO7AQ13402 2215 aa8.48□□□□□ -1.05
COL28A1-201ENST00000399429 TMEM269A0A1B0GVZ9 245 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 ZFP92A6NM28 416 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 TAAR5O14804 337 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 WNT11O96014 354 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 ALOX5APP20292 161 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 TSFMP43897 325 aaKnown RBP8.47□□□□□ -1.05
COL28A1-201ENST00000399429 HNF4GQ14541 408 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 CLLU1OSQ5K130 101 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 ZNF385CQ66K41 422 aaPredicted RBP8.47□□□□□ -1.05
COL28A1-201ENST00000399429 ANKRD16Q6P6B7 361 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 FBXW12Q6X9E4 464 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 TMEM123Q8N131 208 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 RFLNBQ8N5W9 214 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 TMEM217Q8N7C4 229 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 SMARCD2Q92925 531 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 MALSU1Q96EH3 234 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 CNRIP1Q96F85 164 aaPredicted RBP8.47□□□□□ -1.05
COL28A1-201ENST00000399429 SNX22Q96L94 193 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 SFXN1Q9H9B4 322 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 RCC2Q9P258 522 aaKnown RBP8.47□□□□□ -1.05
COL28A1-201ENST00000399429 TMED7Q9Y3B3 224 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 IGLV3-27P01718 113 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 PNLIPRP2P54317 469 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 TRA2BP62995 288 aaKnown RBP8.47□□□□□ -1.05
COL28A1-201ENST00000399429 MRPS34P82930 218 aaKnown RBP8.47□□□□□ -1.05
COL28A1-201ENST00000399429 HABP2Q14520 560 aaPredicted RBP8.47□□□□□ -1.05
COL28A1-201ENST00000399429 FAM189A2Q15884 450 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 ZXDCQ2QGD7 858 aaPredicted RBP8.47□□□□□ -1.05
COL28A1-201ENST00000399429 TMEM184AQ6ZMB5 413 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 TAS1R1Q7RTX1 841 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 CPEB2Q7Z5Q1 589 aaKnown RBP8.47□□□□□ -1.05
COL28A1-201ENST00000399429 OR2G3Q8NGZ4 309 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 CPNE4Q96A23 557 aaPredicted RBP8.47□□□□□ -1.05
COL28A1-201ENST00000399429 SPACA7Q96KW9 195 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 IP6K3Q96PC2 410 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 PATZ1Q9HBE1 687 aaKnown RBP8.47□□□□□ -1.05
COL28A1-201ENST00000399429 SLC7A11Q9UPY5 501 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 SIGLEC7Q9Y286 467 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 CCDC85CA6NKD9 419 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 MFNGO00587 321 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 CRHP06850 196 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 GALTP07902 379 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 S100GP29377 79 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 ID4P47928 161 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 C21orf58P58505 322 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 ECH1Q13011 328 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 FAM199XQ6PEV8 388 aaPredicted RBP8.47□□□□□ -1.05
COL28A1-201ENST00000399429 OPN5Q6U736 354 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 ZFP62Q8NB50 900 aaPredicted RBP8.47□□□□□ -1.05
COL28A1-201ENST00000399429 DTD1Q8TEA8 209 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 SLC25A38Q96DW6 304 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 SAT2Q96F10 170 aaPredicted RBP8.47□□□□□ -1.05
COL28A1-201ENST00000399429 FAM71F1Q96KD3 344 aaPredicted RBP8.47□□□□□ -1.05
COL28A1-201ENST00000399429 SDF2Q99470 211 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 C1orf123Q9NWV4 160 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 EMC9Q9Y3B6 208 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 PIKFYVEQ9Y2I7 2098 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 BRWD1Q9NSI6 2320 aa8.47□□□□□ -1.05
COL28A1-201ENST00000399429 XRCC2O43543 280 aa8.46□□□□□ -1.05
COL28A1-201ENST00000399429 DIRAS3O95661 229 aa8.46□□□□□ -1.05
COL28A1-201ENST00000399429 TIMP2P16035 220 aa8.46□□□□□ -1.05
COL28A1-201ENST00000399429 GNB3P16520 340 aa8.46□□□□□ -1.05
COL28A1-201ENST00000399429 EFNB2P52799 333 aa8.46□□□□□ -1.05
COL28A1-201ENST00000399429 FKBP1BP68106 108 aa8.46□□□□□ -1.05
COL28A1-201ENST00000399429 ZNF345Q14585 488 aa8.46□□□□□ -1.05
COL28A1-201ENST00000399429 ADIRFQ15847 76 aa8.46□□□□□ -1.05
COL28A1-201ENST00000399429 TRMT12Q53H54 448 aaKnown RBP8.46□□□□□ -1.05
COL28A1-201ENST00000399429 PRAMEF8Q5VWM4 474 aa8.46□□□□□ -1.05
COL28A1-201ENST00000399429 PRAMEF7Q5VXH5 474 aa8.46□□□□□ -1.05
COL28A1-201ENST00000399429 GVQW1Q8N7I0 195 aa8.46□□□□□ -1.05
COL28A1-201ENST00000399429 TMEM229BQ8NBD8 167 aa8.46□□□□□ -1.05
COL28A1-201ENST00000399429 SUMF1Q8NBK3 374 aa8.46□□□□□ -1.05
COL28A1-201ENST00000399429 OVCA2Q8WZ82 227 aa8.46□□□□□ -1.05
COL28A1-201ENST00000399429 CMBLQ96DG6 245 aa8.46□□□□□ -1.05
COL28A1-201ENST00000399429 VPS25Q9BRG1 176 aa8.46□□□□□ -1.05
COL28A1-201ENST00000399429 SLC35B3Q9H1N7 401 aa8.46□□□□□ -1.05
COL28A1-201ENST00000399429 SIRT3Q9NTG7 399 aaPredicted RBP8.46□□□□□ -1.05
COL28A1-201ENST00000399429 VSX1Q9NZR4 365 aaPredicted RBP8.46□□□□□ -1.05
COL28A1-201ENST00000399429 DOK5Q9P104 306 aa8.46□□□□□ -1.05
COL28A1-201ENST00000399429 DEC1Q9P2X7 70 aa8.46□□□□□ -1.05
COL28A1-201ENST00000399429 UBE2J1Q9Y385 318 aaPredicted RBP8.46□□□□□ -1.05
COL28A1-201ENST00000399429 OR1A2Q9Y585 309 aa8.46□□□□□ -1.05
COL28A1-201ENST00000399429 OR5H15A6NDH6 313 aa8.46□□□□□ -1.05
COL28A1-201ENST00000399429 OR5H1A6NKK0 313 aa8.46□□□□□ -1.05
COL28A1-201ENST00000399429 NPIPA5E9PKD4 350 aa8.46□□□□□ -1.05
COL28A1-201ENST00000399429 H2AFB1P0C5Y9 115 aa8.46□□□□□ -1.05
COL28A1-201ENST00000399429 RCC1P18754 421 aaPredicted RBP8.46□□□□□ -1.05
COL28A1-201ENST00000399429 AKT2P31751 481 aa8.46□□□□□ -1.05
COL28A1-201ENST00000399429 CD96P40200 585 aa8.46□□□□□ -1.05
COL28A1-201ENST00000399429 PRDX1Q06830 199 aaKnown RBP8.46□□□□□ -1.05
COL28A1-201ENST00000399429 SLC48A1Q6P1K1 146 aa8.46□□□□□ -1.05
COL28A1-201ENST00000399429 OR5D18Q8NGL1 313 aa8.46□□□□□ -1.05
COL28A1-201ENST00000399429 EDAQ92838 391 aa8.46□□□□□ -1.05
COL28A1-201ENST00000399429 SPACA5Q96QH8 159 aa8.46□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms