RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 ZNF3P17036 446 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 FKBP2P26885 142 aaKnown RBP11.09□□□□□ -0.63
CIITA-202ENST00000381835 DIO1P49895 249 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 CCR6P51684 374 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 RAC1P63000 192 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 TLE3Q04726 772 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 CRMP1Q14194 572 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 POU4F3Q15319 338 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 ACSM3Q53FZ2 586 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 TMEM251Q8N6I4 163 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 FAM98AQ8NCA5 519 aaKnown RBP11.09□□□□□ -0.63
CIITA-202ENST00000381835 KISS1RQ969F8 398 aaPredicted RBP11.09□□□□□ -0.63
CIITA-202ENST00000381835 YIPF5Q969M3 257 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 CCDC120Q96HB5 630 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 GPX7Q96SL4 187 aaPredicted RBP11.09□□□□□ -0.63
CIITA-202ENST00000381835 TEAD3Q99594 435 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 SMAD5Q99717 465 aaKnown RBP11.09□□□□□ -0.63
CIITA-202ENST00000381835 HEXA-AS1Q9H8Q6 139 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 HDGFL3Q9Y3E1 203 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 CHD8Q9HCK8 2581 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 ATMQ13315 3056 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 SLC22A31A6NKX4 558 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 H0YC42 278 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 I3L521 148 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 SSNA1O43805 119 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 UBL3O95164 117 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 IFNGP01579 166 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 H2AFB2P0C5Z0 115 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 STARP49675 285 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 ZNF81P51508 661 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 MMP15P51511 669 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 TAS2R43P59537 309 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 PPIAP62937 165 aaKnown RBP11.09□□□□□ -0.63
CIITA-202ENST00000381835 DGCR2P98153 550 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 PUDPQ08623 228 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 RPTNQ6XPR3 784 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 H1FNTQ75WM6 255 aaPredicted RBP11.09□□□□□ -0.63
CIITA-202ENST00000381835 BEST4Q8NFU0 473 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 PTP4A1Q93096 173 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 SORCS2Q96PQ0 1159 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 CHST11Q9NPF2 352 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 ALKBH4Q9NXW9 302 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 GRHPRQ9UBQ7 328 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 DKK4Q9UBT3 224 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 NUP50Q9UKX7 468 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 SLC6A5Q9Y345 797 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 MRPS18CQ9Y3D5 142 aaKnown RBP11.09□□□□□ -0.63
CIITA-202ENST00000381835 AUP1Q9Y679 476 aa11.09□□□□□ -0.63
CIITA-202ENST00000381835 KIAA1549Q9HCM3 1950 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 SPENQ96T58 3664 aaKnown RBP11.08□□□□□ -0.64
CIITA-202ENST00000381835 A0A1B0GVI7 797 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 MS4A18H0YCH9 400 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 ARPC3O15145 178 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 IFNA7P01567 189 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 DNASE1P24855 282 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 SSTR2P30874 369 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 HSF2Q03933 536 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 ST3GAL2Q16842 350 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 GSG1Q2KHT4 349 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 MS4A18Q3C1V0 323 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 LGALSLQ3ZCW2 172 aaPredicted RBP11.08□□□□□ -0.64
CIITA-202ENST00000381835 HSD17B12Q53GQ0 312 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 TMPPEQ6ZT21 453 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 FAM122BQ7Z309 247 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 PXKQ7Z7A4 578 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 SMAP2Q8WU79 429 aaPredicted RBP11.08□□□□□ -0.64
CIITA-202ENST00000381835 TSPAN32Q96QS1 320 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 NMNAT3Q96T66 252 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 ZNF346Q9UL40 294 aaKnown RBP11.08□□□□□ -0.64
CIITA-202ENST00000381835 ZMIZ1Q9ULJ6 1067 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 RAXQ9Y2V3 346 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 MAP1BP46821 2468 aaKnown RBP11.08□□□□□ -0.64
CIITA-202ENST00000381835 MEIKINA0A087WXM9 373 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 A0A1W2PPK0 400 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 A0A1W2PRG6 482 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 GPR171O14626 319 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 IMPA2O14732 288 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 TNFSF11O14788 317 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 SCO1O75880 301 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 GLSO94925 669 aaPredicted RBP11.08□□□□□ -0.64
CIITA-202ENST00000381835 MT-ND4P03905 459 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 CLUP10909 449 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 HLA-DOBP13765 273 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 SNRPBP14678 240 aaKnown RBP11.08□□□□□ -0.64
CIITA-202ENST00000381835 SDHAP31040 664 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 OR12D2P58182 307 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 PMP22Q01453 160 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 SNTB2Q13425 540 aaKnown RBP11.08□□□□□ -0.64
CIITA-202ENST00000381835 CAMK2DQ13557 499 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 PIAS4Q8N2W9 510 aaPredicted RBP11.08□□□□□ -0.64
CIITA-202ENST00000381835 ZFP62Q8NB50 900 aaPredicted RBP11.08□□□□□ -0.64
CIITA-202ENST00000381835 OR13C5Q8NGS8 318 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 GHSRQ92847 366 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 MIB2Q96AX9 1013 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 MS4A3Q96HJ5 214 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 SLC6A15Q9H2J7 730 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 BRD7Q9NPI1 651 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 B3GALT5Q9Y2C3 310 aa11.08□□□□□ -0.64
CIITA-202ENST00000381835 SVILO95425 2214 aa11.07□□□□□ -0.64
CIITA-202ENST00000381835 TRAV17A0A0B4J275 112 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms