RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 IMMP2LQ96T52 175 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 RASL12Q9NYN1 266 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 CSO75390 466 aaKnown RBP4.49□□□□□ -1.69
PCDH9-201ENST00000377861 ERVK-16P61578 105 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 ANGPTL5Q86XS5 388 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 OR4N5Q8IXE1 308 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 PRR11Q96HE9 360 aaPredicted RBP4.49□□□□□ -1.69
PCDH9-201ENST00000377861 HKR1P10072 659 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 ZNF35P13682 527 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 RAC2P15153 192 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 FPR2P25090 351 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 PAQR6Q6TCH4 344 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 CTU1Q7Z7A3 348 aaKnown RBP4.49□□□□□ -1.69
PCDH9-201ENST00000377861 TMEM104Q8NE00 496 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 TOLLIPQ9H0E2 274 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 NOX4Q9NPH5 578 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 H2AFB1P0C5Y9 115 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 THBS4P35443 961 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 CLDN6P56747 220 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 COTL1Q14019 142 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 WDR73Q6P4I2 378 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 GPR87Q9BY21 358 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 RECKO95980 971 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 SNRPEP62304 92 aaKnown RBP4.49□□□□□ -1.69
PCDH9-201ENST00000377861 FABP5Q01469 135 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 OVCH2Q7RTZ1 564 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 SLC16A11Q8NCK7 471 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 MMABQ96EY8 250 aaPredicted RBP4.49□□□□□ -1.69
PCDH9-201ENST00000377861 OCEL1Q9H607 264 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 MPC1Q9Y5U8 109 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 PTGFRP43088 359 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 VCX2Q9H322 139 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 GSKIPQ9P0R6 139 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 C11orf97A0A1B0GVM6 126 aaPredicted RBP4.49□□□□□ -1.69
PCDH9-201ENST00000377861 MAKP20794 623 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 GDI1P31150 447 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 PBX4Q9BYU1 374 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 MARCH5Q9NX47 278 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 TRBV9A0A0B4J1U6 114 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 TMEM250H0YL14 139 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 NDRG2Q9UN36 371 aaKnown RBP4.49□□□□□ -1.69
PCDH9-201ENST00000377861 TNFSF18Q9UNG2 199 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 CASZ1Q86V15 1759 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 LRP3O75074 770 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 TAL1P17542 331 aaPredicted RBP4.49□□□□□ -1.69
PCDH9-201ENST00000377861 LCN2P80188 198 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 OR6N2Q8NGY6 317 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 AKR7LQ8NHP1 331 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 HOXB2P14652 356 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 NKX6-1P78426 367 aaPredicted RBP4.49□□□□□ -1.69
PCDH9-201ENST00000377861 LRRC18Q8N456 261 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 SLC5A7Q9GZV3 580 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 ZNF160Q9HCG1 818 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 LGALS8O00214 317 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 ZNF77Q15935 545 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 DEFB128Q7Z7B8 93 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 LAX1Q8IWV1 398 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 MRPL38Q96DV4 380 aaKnown RBP4.49□□□□□ -1.69
PCDH9-201ENST00000377861 PMCHP20382 165 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 SNCAP37840 140 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 ZNF684Q5T5D7 378 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 OR2D3Q8NGH3 330 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 TM4SF19Q96DZ7 209 aa4.49□□□□□ -1.69
PCDH9-201ENST00000377861 RD3Q7Z3Z2 195 aa4.48□□□□□ -1.69
PCDH9-201ENST00000377861 OR1L6Q8NGR2 347 aa4.48□□□□□ -1.69
PCDH9-201ENST00000377861 OR6K2Q8NGY2 324 aa4.48□□□□□ -1.69
PCDH9-201ENST00000377861 TMED7-TICAM2A0A0A6YYA0 188 aa4.48□□□□□ -1.69
PCDH9-201ENST00000377861 KIR2DS2P43631 304 aa4.48□□□□□ -1.69
PCDH9-201ENST00000377861 RNPS1Q15287 305 aaKnown RBP4.48□□□□□ -1.69
PCDH9-201ENST00000377861 SIX5Q8N196 739 aa4.48□□□□□ -1.69
PCDH9-201ENST00000377861 HMGB4Q8WW32 186 aa4.48□□□□□ -1.69
PCDH9-201ENST00000377861 HSF1Q00613 529 aa4.48□□□□□ -1.69
PCDH9-201ENST00000377861 HLXQ14774 488 aaPredicted RBP4.48□□□□□ -1.69
PCDH9-201ENST00000377861 TRIM43Q96BQ3 446 aaPredicted RBP4.48□□□□□ -1.69
PCDH9-201ENST00000377861 G3V3Q6 166 aa4.48□□□□□ -1.69
PCDH9-201ENST00000377861 TCEA1P23193 301 aaKnown RBP4.48□□□□□ -1.69
PCDH9-201ENST00000377861 OR1D4P47884 311 aa4.48□□□□□ -1.69
PCDH9-201ENST00000377861 MLLT10P55197 1068 aa4.48□□□□□ -1.69
PCDH9-201ENST00000377861 ANKRD9Q96BM1 317 aaPredicted RBP4.48□□□□□ -1.69
PCDH9-201ENST00000377861 A8MX80 341 aa4.48□□□□□ -1.69
PCDH9-201ENST00000377861 SEMA4FO95754 770 aa4.48□□□□□ -1.69
PCDH9-201ENST00000377861 HSPB1P04792 205 aaKnown RBP4.48□□□□□ -1.69
PCDH9-201ENST00000377861 RFC3P40938 356 aa4.48□□□□□ -1.69
PCDH9-201ENST00000377861 CAMLGP49069 296 aa4.48□□□□□ -1.69
PCDH9-201ENST00000377861 IL24Q13007 206 aa4.48□□□□□ -1.69
PCDH9-201ENST00000377861 P4HA3Q7Z4N8 544 aa4.48□□□□□ -1.69
PCDH9-201ENST00000377861 DNAJC5GQ8N7S2 189 aa4.48□□□□□ -1.69
PCDH9-201ENST00000377861 OR56B2PQ8NGI1 322 aa4.48□□□□□ -1.69
PCDH9-201ENST00000377861 OR5M11Q96RB7 305 aa4.48□□□□□ -1.69
PCDH9-201ENST00000377861 CD70P32970 193 aa4.48□□□□□ -1.69
PCDH9-201ENST00000377861 TSTD1Q8NFU3 115 aa4.48□□□□□ -1.69
PCDH9-201ENST00000377861 OR1S2Q8NGQ3 325 aa4.48□□□□□ -1.69
PCDH9-201ENST00000377861 VAX2Q9UIW0 290 aa4.48□□□□□ -1.69
PCDH9-201ENST00000377861 PMF1-BGLAPU3KQ54 211 aa4.48□□□□□ -1.69
PCDH9-201ENST00000377861 TIAL1Q01085 375 aaKnown RBP eCLIP4.48□□□□□ -1.69
PCDH9-201ENST00000377861 OR9Q2Q8NGE9 314 aa4.48□□□□□ -1.69
PCDH9-201ENST00000377861 NIPSNAP1Q9BPW8 284 aa4.48□□□□□ -1.69
PCDH9-201ENST00000377861 FLVCR1Q9Y5Y0 555 aa4.48□□□□□ -1.69
PCDH9-201ENST00000377861 RNASEK-C17orf49H0YIS7 233 aa4.48□□□□□ -1.69
PCDH9-201ENST00000377861 PSMB10P40306 273 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms