RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 ANKRD61A6NGH8 418 aa13.49□□□□□ -0.25
COL17A1-201ENST00000353479 NKX6-3A6NJ46 265 aa13.49□□□□□ -0.25
COL17A1-201ENST00000353479 CAMLGP49069 296 aa13.49□□□□□ -0.25
COL17A1-201ENST00000353479 PMS2CLQ68D20 193 aa13.49□□□□□ -0.25
COL17A1-201ENST00000353479 ELMOD3Q96FG2 381 aa13.49□□□□□ -0.25
COL17A1-201ENST00000353479 PRDM6Q9NQX0 595 aa13.49□□□□□ -0.25
COL17A1-201ENST00000353479 PLCXD1Q9NUJ7 323 aa13.49□□□□□ -0.25
COL17A1-201ENST00000353479 DNAJB12Q9NXW2 375 aaKnown RBP13.49□□□□□ -0.25
COL17A1-201ENST00000353479 CHST2Q9Y4C5 530 aa13.49□□□□□ -0.25
COL17A1-201ENST00000353479 CRYAAP02489 173 aa13.48□□□□□ -0.25
COL17A1-201ENST00000353479 CRYABP02511 175 aaKnown RBP13.48□□□□□ -0.25
COL17A1-201ENST00000353479 MRPL41Q8IXM3 137 aaKnown RBP13.48□□□□□ -0.25
COL17A1-201ENST00000353479 C22orf15Q8WYQ4 148 aa13.48□□□□□ -0.25
COL17A1-201ENST00000353479 TAAR8Q969N4 342 aa13.48□□□□□ -0.25
COL17A1-201ENST00000353479 ZNF681Q96N22 645 aa13.48□□□□□ -0.25
COL17A1-201ENST00000353479 GPR84Q9NQS5 396 aa13.48□□□□□ -0.25
COL17A1-201ENST00000353479 KNTC1P50748 2209 aa13.48□□□□□ -0.25
COL17A1-201ENST00000353479 CCDC163A0A0D9SF12 145 aa13.48□□□□□ -0.25
COL17A1-201ENST00000353479 ALDOBP05062 364 aa13.48□□□□□ -0.25
COL17A1-201ENST00000353479 APEHP13798 732 aaKnown RBP13.48□□□□□ -0.25
COL17A1-201ENST00000353479 KLHDC8BQ8IXV7 354 aa13.48□□□□□ -0.25
COL17A1-201ENST00000353479 TMEM68Q96MH6 324 aa13.48□□□□□ -0.25
COL17A1-201ENST00000353479 PAHP00439 452 aa13.48□□□□□ -0.25
COL17A1-201ENST00000353479 CDAP32320 146 aa13.48□□□□□ -0.25
COL17A1-201ENST00000353479 CDCA4Q9BXL8 241 aa13.48□□□□□ -0.25
COL17A1-201ENST00000353479 B9D1Q9UPM9 204 aa13.48□□□□□ -0.25
COL17A1-201ENST00000353479 SELEP16581 610 aa13.48□□□□□ -0.25
COL17A1-201ENST00000353479 ALDH3B2P48448 385 aa13.48□□□□□ -0.25
COL17A1-201ENST00000353479 OR1M1Q8NGA1 313 aa13.48□□□□□ -0.25
COL17A1-201ENST00000353479 DVL3Q92997 716 aaPredicted RBP13.48□□□□□ -0.25
COL17A1-201ENST00000353479 EGLN1Q9GZT9 426 aa13.48□□□□□ -0.25
COL17A1-201ENST00000353479 MOB1AQ9H8S9 216 aa13.48□□□□□ -0.25
COL17A1-201ENST00000353479 NTN4Q9HB63 628 aa13.48□□□□□ -0.25
COL17A1-201ENST00000353479 UBBP0CG47 229 aa13.48□□□□□ -0.25
COL17A1-201ENST00000353479 HOXD12P35452 270 aa13.48□□□□□ -0.25
COL17A1-201ENST00000353479 RBP2P50120 134 aa13.48□□□□□ -0.25
COL17A1-201ENST00000353479 PRSS42Q7Z5A4 293 aa13.48□□□□□ -0.25
COL17A1-201ENST00000353479 OR13C5Q8NGS8 318 aa13.48□□□□□ -0.25
COL17A1-201ENST00000353479 RNF128Q8TEB7 428 aa13.48□□□□□ -0.25
COL17A1-201ENST00000353479 ZNF768Q9H5H4 540 aaKnown RBP13.48□□□□□ -0.25
COL17A1-201ENST00000353479 TMEM82A0PJX8 343 aa13.47□□□□□ -0.25
COL17A1-201ENST00000353479 SERPINA7P05543 415 aa13.47□□□□□ -0.25
COL17A1-201ENST00000353479 EGR3Q06889 387 aa13.47□□□□□ -0.25
COL17A1-201ENST00000353479 FAM198BQ6UWH4 519 aa13.47□□□□□ -0.25
COL17A1-201ENST00000353479 WDR5BQ86VZ2 330 aa13.47□□□□□ -0.25
COL17A1-201ENST00000353479 GPR32P1Q8NGA4 272 aa13.47□□□□□ -0.25
COL17A1-201ENST00000353479 C3orf49Q96BT1 292 aa13.47□□□□□ -0.25
COL17A1-201ENST00000353479 CCDC86Q9H6F5 360 aaKnown RBP13.47□□□□□ -0.25
COL17A1-201ENST00000353479 SIRT3Q9NTG7 399 aaPredicted RBP13.47□□□□□ -0.25
COL17A1-201ENST00000353479 CROCCQ5TZA2 2017 aa13.47□□□□□ -0.25
COL17A1-201ENST00000353479 CALCBP10092 127 aa13.47□□□□□ -0.25
COL17A1-201ENST00000353479 RBMS2Q15434 407 aaKnown RBP13.47□□□□□ -0.25
COL17A1-201ENST00000353479 CEACAM16Q2WEN9 425 aa13.47□□□□□ -0.25
COL17A1-201ENST00000353479 OR10K1Q8NGX5 313 aa13.47□□□□□ -0.25
COL17A1-201ENST00000353479 INTS12Q96CB8 462 aaKnown RBP13.47□□□□□ -0.25
COL17A1-201ENST00000353479 ERVMER34-1Q9H9K5 563 aa13.47□□□□□ -0.25
COL17A1-201ENST00000353479 SLC22A13Q9Y226 551 aa13.47□□□□□ -0.25
COL17A1-201ENST00000353479 CEBPZOSA8MTT3 80 aa13.47□□□□□ -0.25
COL17A1-201ENST00000353479 HS3ST1O14792 307 aa13.47□□□□□ -0.25
COL17A1-201ENST00000353479 SSX5O60225 188 aa13.47□□□□□ -0.25
COL17A1-201ENST00000353479 SDHBP21912 280 aa13.47□□□□□ -0.25
COL17A1-201ENST00000353479 PAN3Q58A45 887 aaKnown RBP13.47□□□□□ -0.25
COL17A1-201ENST00000353479 GALNT16Q8N428 558 aa13.47□□□□□ -0.25
COL17A1-201ENST00000353479 NOXO1Q8NFA2 376 aa13.47□□□□□ -0.25
COL17A1-201ENST00000353479 OR52N5Q8NH56 324 aa13.47□□□□□ -0.25
COL17A1-201ENST00000353479 GIMAP1Q8WWP7 306 aa13.47□□□□□ -0.25
COL17A1-201ENST00000353479 BOD1Q96IK1 185 aa13.47□□□□□ -0.25
COL17A1-201ENST00000353479 NKX3-1Q99801 234 aaPredicted RBP13.47□□□□□ -0.25
COL17A1-201ENST00000353479 MMP25Q9NPA2 562 aa13.47□□□□□ -0.25
COL17A1-201ENST00000353479 GDF2Q9UK05 429 aaPredicted RBP13.47□□□□□ -0.25
COL17A1-201ENST00000353479 DEGS1O15121 323 aa13.47□□□□□ -0.25
COL17A1-201ENST00000353479 TUSC2O75896 110 aa13.47□□□□□ -0.25
COL17A1-201ENST00000353479 SMIM18P0DKX4 95 aa13.47□□□□□ -0.25
COL17A1-201ENST00000353479 CPEP16870 476 aa13.47□□□□□ -0.25
COL17A1-201ENST00000353479 PRKACAP17612 351 aa13.47□□□□□ -0.25
COL17A1-201ENST00000353479 SHBQ15464 509 aa13.47□□□□□ -0.25
COL17A1-201ENST00000353479 TATDN3Q17R31 274 aa13.47□□□□□ -0.25
COL17A1-201ENST00000353479 UBE3DQ7Z6J8 389 aa13.47□□□□□ -0.25
COL17A1-201ENST00000353479 ANKRD9Q96BM1 317 aaPredicted RBP13.47□□□□□ -0.25
COL17A1-201ENST00000353479 FBXO4Q9UKT5 387 aa13.47□□□□□ -0.25
COL17A1-201ENST00000353479 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.46□□□□□ -0.25
COL17A1-201ENST00000353479 M0QYG6 137 aa13.46□□□□□ -0.25
COL17A1-201ENST00000353479 TNFSF12O43508 249 aa13.46□□□□□ -0.25
COL17A1-201ENST00000353479 SPDEFO95238 335 aa13.46□□□□□ -0.25
COL17A1-201ENST00000353479 IFNA17P01571 189 aa13.46□□□□□ -0.25
COL17A1-201ENST00000353479 PMP2P02689 132 aa13.46□□□□□ -0.25
COL17A1-201ENST00000353479 GP2P55259 537 aaKnown RBP13.46□□□□□ -0.25
COL17A1-201ENST00000353479 TAS2R20P59543 309 aa13.46□□□□□ -0.25
COL17A1-201ENST00000353479 AKR1C8PQ5T2L2 129 aa13.46□□□□□ -0.25
COL17A1-201ENST00000353479 GPR155Q7Z3F1 870 aa13.46□□□□□ -0.25
COL17A1-201ENST00000353479 SLC22A18ASQ8N1D0 253 aa13.46□□□□□ -0.25
COL17A1-201ENST00000353479 OR2Y1Q8NGV0 311 aa13.46□□□□□ -0.25
COL17A1-201ENST00000353479 PTTG3PQ9NZH4 202 aa13.46□□□□□ -0.25
COL17A1-201ENST00000353479 TCFL5Q9UL49 500 aa13.46□□□□□ -0.25
COL17A1-201ENST00000353479 TRIOBPQ9H2D6 2365 aa13.46□□□□□ -0.25
COL17A1-201ENST00000353479 TEX51A0A1B0GUA7 166 aa13.46□□□□□ -0.25
COL17A1-201ENST00000353479 A0A1W2PPC1 479 aa13.46□□□□□ -0.25
COL17A1-201ENST00000353479 A0A1W2PS29 197 aa13.46□□□□□ -0.25
COL17A1-201ENST00000353479 ENSAO43768 121 aaKnown RBP13.46□□□□□ -0.25
COL17A1-201ENST00000353479 AVPR2P30518 371 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms