RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 OR6N2Q8NGY6 317 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 SECTM1Q8WVN6 248 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 SAT2Q96F10 170 aaPredicted RBP6.12□□□□□ -1.43
VPS39-202ENST00000348544 TAAR9Q96RI9 348 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 OCSTAMPQ9BR26 566 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 MKKSQ9NPJ1 570 aaPredicted RBP6.12□□□□□ -1.43
VPS39-202ENST00000348544 OR2S2Q9NQN1 319 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 LAMP5Q9UJQ1 280 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 MRPS33Q9Y291 106 aaKnown RBP6.12□□□□□ -1.43
VPS39-202ENST00000348544 SLC27A6Q9Y2P4 619 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 DOCK9Q9BZ29 2069 aa6.12□□□□□ -1.43
VPS39-202ENST00000348544 ALPK2Q86TB3 2170 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 IGKV1D-42A0A075B6H8 117 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 A0A087WUJ7 227 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 C7orf77A4D0Y5 90 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 GRXCR1A8MXD5 290 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 PHYHO14832 338 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 LDLRAD4O15165 306 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 ST8SIA5O15466 376 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 MED6O75586 246 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 STK17BO94768 372 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 DUS4LO95620 317 aaKnown RBP6.11□□□□□ -1.43
VPS39-202ENST00000348544 PNPP00491 289 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 LRG1P02750 347 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 SERPINA5P05154 406 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 RHOP08100 348 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 CISD3P0C7P0 127 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 RAB5AP20339 215 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 PMELP40967 661 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 SSTP61278 116 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 CDNFQ49AH0 187 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 TMEM52BQ4KMG9 183 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 RNASE10Q5GAN6 216 aaKnown RBP6.11□□□□□ -1.43
VPS39-202ENST00000348544 KRBOX4Q5JUW0 171 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 TMEM225Q6GV28 225 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 FIP1L1Q6UN15 594 aaKnown RBP6.11□□□□□ -1.43
VPS39-202ENST00000348544 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.11□□□□□ -1.43
VPS39-202ENST00000348544 RTN4RL2Q86UN3 420 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 ZNF584Q8IVC4 421 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 ZDHHC22Q8N966 263 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 LRRC75AQ8NAA5 344 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 OR51A2Q8NGJ7 313 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 ZNF563Q8TA94 476 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 RNF128Q8TEB7 428 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 TCTEX1D2Q8WW35 142 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 CMBLQ96DG6 245 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 KIRREL1Q96J84 757 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 TOX2Q96NM4 488 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 GPX7Q96SL4 187 aaPredicted RBP6.11□□□□□ -1.43
VPS39-202ENST00000348544 PFDN5Q99471 154 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 PRRT1Q99946 306 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 SULT4A1Q9BR01 284 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 SYT4Q9H2B2 425 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 SLCO5A1Q9H2Y9 848 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 TMPRSS5Q9H3S3 457 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 SLC2A4RGQ9NR83 387 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 PRR13Q9NZ81 148 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 DAPP1Q9UN19 280 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 OR1A2Q9Y585 309 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 HEATR5AQ86XA9 2040 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 MPDZO75970 2070 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 BLOC1S5-TXNDC5H3BN57 136 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 AP4M1O00189 453 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 GPR37O15354 613 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 CCL16O15467 120 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 MOSPD3O75425 235 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 SNRNP70P08621 437 aaKnown RBP6.11□□□□□ -1.43
VPS39-202ENST00000348544 HOXC4P09017 264 aaPredicted RBP6.11□□□□□ -1.43
VPS39-202ENST00000348544 OR8U9P0C7N5 309 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 MAOAP21397 527 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 MPZP25189 248 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 HTR2CP28335 458 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 LAP3P28838 519 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 ARRB1P49407 418 aaPredicted RBP6.11□□□□□ -1.43
VPS39-202ENST00000348544 CENPAP49450 140 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 OR2B8PP59922 312 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 ADAM8P78325 824 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 RASGEF1BQ0VAM2 473 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 SGCAQ16586 387 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 PRICKLE4Q2TBC4 344 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 TCEAL5Q5H9L2 206 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 PYY3Q5JQD4 70 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 RPL7L1Q6DKI1 246 aaKnown RBP6.11□□□□□ -1.43
VPS39-202ENST00000348544 DGAT2L6Q6ZPD8 337 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 FJX1Q86VR8 437 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 SFTPA1Q8IWL2 248 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 DMRTC2Q8IXT2 367 aaPredicted RBP6.11□□□□□ -1.43
VPS39-202ENST00000348544 ACBD4Q8NC06 268 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 OR8U1Q8NH10 309 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 OR51F2Q8NH61 342 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 MOGAT1Q96PD6 335 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 NMES1Q9C002 83 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 SLC5A7Q9GZV3 580 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 MBNL1Q9NR56 388 aaKnown RBP6.11□□□□□ -1.43
VPS39-202ENST00000348544 TAS2R4Q9NYW5 299 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 TREM2Q9NZC2 230 aa6.11□□□□□ -1.43
VPS39-202ENST00000348544 ZNF107Q9UII5 783 aaPredicted RBP6.11□□□□□ -1.43
VPS39-202ENST00000348544 MRPS2Q9Y399 296 aaKnown RBP6.11□□□□□ -1.43
VPS39-202ENST00000348544 A0A087WV62 115 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 A0A1B0GV90 55 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms