RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 RENP00797 406 aa20.14■□□□□ 0.81
TRIM28-202ENST00000341753 MAOAP21397 527 aa20.14■□□□□ 0.81
TRIM28-202ENST00000341753 VAMP1P23763 118 aa20.14■□□□□ 0.81
TRIM28-202ENST00000341753 PMPCAQ10713 525 aa20.14■□□□□ 0.81
TRIM28-202ENST00000341753 PLEKHN1Q494U1 663 aaPredicted RBP20.14■□□□□ 0.81
TRIM28-202ENST00000341753 CDNFQ49AH0 187 aa20.14■□□□□ 0.81
TRIM28-202ENST00000341753 C1QL3Q5VWW1 255 aa20.14■□□□□ 0.81
TRIM28-202ENST00000341753 OR52W1Q6IF63 320 aa20.14■□□□□ 0.81
TRIM28-202ENST00000341753 METTL27Q8N6F8 245 aaPredicted RBP20.14■□□□□ 0.81
TRIM28-202ENST00000341753 GVQW1Q8N7I0 195 aa20.14■□□□□ 0.81
TRIM28-202ENST00000341753 MRPL38Q96DV4 380 aaKnown RBP20.14■□□□□ 0.81
TRIM28-202ENST00000341753 G6PC3Q9BUM1 346 aa20.14■□□□□ 0.81
TRIM28-202ENST00000341753 B9D1Q9UPM9 204 aa20.14■□□□□ 0.81
TRIM28-202ENST00000341753 PIAS3Q9Y6X2 628 aa20.14■□□□□ 0.81
TRIM28-202ENST00000341753 ASAH2BP0C7U1 165 aa20.13■□□□□ 0.81
TRIM28-202ENST00000341753 CXADRP78310 365 aa20.13■□□□□ 0.81
TRIM28-202ENST00000341753 SCRN3Q0VDG4 424 aa20.13■□□□□ 0.81
TRIM28-202ENST00000341753 ZNF345Q14585 488 aa20.13■□□□□ 0.81
TRIM28-202ENST00000341753 Q6ZSR6 202 aa20.13■□□□□ 0.81
TRIM28-202ENST00000341753 CCDC36Q8IYA8 594 aa20.13■□□□□ 0.81
TRIM28-202ENST00000341753 OTOSQ8NHW6 89 aa20.13■□□□□ 0.81
TRIM28-202ENST00000341753 A6NCN8 305 aa20.13■□□□□ 0.81
TRIM28-202ENST00000341753 F8W036 122 aa20.13■□□□□ 0.81
TRIM28-202ENST00000341753 PRKXP51817 358 aa20.13■□□□□ 0.81
TRIM28-202ENST00000341753 BLOC1S1P78537 153 aa20.13■□□□□ 0.81
TRIM28-202ENST00000341753 C1orf61Q13536 156 aa20.13■□□□□ 0.81
TRIM28-202ENST00000341753 EEF1A1P5Q5VTE0 462 aa20.13■□□□□ 0.81
TRIM28-202ENST00000341753 FAM166AQ6J272 317 aa20.13■□□□□ 0.81
TRIM28-202ENST00000341753 PARGQ86W56 976 aa20.13■□□□□ 0.81
TRIM28-202ENST00000341753 FAM219AQ8IW50 185 aa20.13■□□□□ 0.81
TRIM28-202ENST00000341753 SVBPQ8N300 66 aa20.13■□□□□ 0.81
TRIM28-202ENST00000341753 TAAR8Q969N4 342 aa20.13■□□□□ 0.81
TRIM28-202ENST00000341753 CDCA3Q99618 268 aaPredicted RBP20.13■□□□□ 0.81
TRIM28-202ENST00000341753 ATPIF1Q9UII2 106 aa20.13■□□□□ 0.81
TRIM28-202ENST00000341753 SLC25A4P12235 298 aa20.12■□□□□ 0.81
TRIM28-202ENST00000341753 HPGDP15428 266 aa20.12■□□□□ 0.81
TRIM28-202ENST00000341753 CBX5P45973 191 aa20.12■□□□□ 0.81
TRIM28-202ENST00000341753 SLC17A1Q14916 467 aa20.12■□□□□ 0.81
TRIM28-202ENST00000341753 CCDC157Q569K6 752 aa20.12■□□□□ 0.81
TRIM28-202ENST00000341753 WBP2NLQ6ICG8 309 aa20.12■□□□□ 0.81
TRIM28-202ENST00000341753 OR13H1Q8NG92 308 aa20.12■□□□□ 0.81
TRIM28-202ENST00000341753 ASB13Q8WXK3 278 aa20.12■□□□□ 0.81
TRIM28-202ENST00000341753 C13orf42A0A1B0GVH6 325 aa20.12■□□□□ 0.81
TRIM28-202ENST00000341753 TCRBV21S2A2A0A5A6 115 aa20.12■□□□□ 0.81
TRIM28-202ENST00000341753 LMX1BO60663 402 aa20.12■□□□□ 0.81
TRIM28-202ENST00000341753 HNRNPA2B1P22626 353 aaKnown RBP20.12■□□□□ 0.81
TRIM28-202ENST00000341753 HOXA1P49639 335 aaPredicted RBP20.12■□□□□ 0.81
TRIM28-202ENST00000341753 INPP5JQ15735 1006 aaPredicted RBP20.12■□□□□ 0.81
TRIM28-202ENST00000341753 PAPD4Q6PIY7 484 aaKnown RBP20.12■□□□□ 0.81
TRIM28-202ENST00000341753 TMEM184AQ6ZMB5 413 aa20.12■□□□□ 0.81
TRIM28-202ENST00000341753 OR8B4Q96RC9 309 aa20.12■□□□□ 0.81
TRIM28-202ENST00000341753 TLNRD1Q9H1K6 362 aa20.12■□□□□ 0.81
TRIM28-202ENST00000341753 SLCO1B1Q9Y6L6 691 aa20.12■□□□□ 0.81
TRIM28-202ENST00000341753 A0A1W2PPC1 479 aa20.11■□□□□ 0.81
TRIM28-202ENST00000341753 WISP1O95388 367 aa20.11■□□□□ 0.81
TRIM28-202ENST00000341753 PGAM2P15259 253 aa20.11■□□□□ 0.81
TRIM28-202ENST00000341753 AKR1C4P17516 323 aa20.11■□□□□ 0.81
TRIM28-202ENST00000341753 INO80EQ8NBZ0 244 aaPredicted RBP20.11■□□□□ 0.81
TRIM28-202ENST00000341753 THAP6Q8TBB0 222 aa20.11■□□□□ 0.81
TRIM28-202ENST00000341753 CMSS1Q9BQ75 279 aaKnown RBP20.11■□□□□ 0.81
TRIM28-202ENST00000341753 SLC19A3Q9BZV2 496 aa20.11■□□□□ 0.81
TRIM28-202ENST00000341753 MELTFP08582 738 aa20.11■□□□□ 0.81
TRIM28-202ENST00000341753 RAB13P51153 203 aa20.11■□□□□ 0.81
TRIM28-202ENST00000341753 ADAM8P78325 824 aa20.11■□□□□ 0.81
TRIM28-202ENST00000341753 TMPPEQ6ZT21 453 aa20.11■□□□□ 0.81
TRIM28-202ENST00000341753 MED25Q71SY5 747 aa20.11■□□□□ 0.81
TRIM28-202ENST00000341753 ZNF584Q8IVC4 421 aa20.11■□□□□ 0.81
TRIM28-202ENST00000341753 SLC22A18ASQ8N1D0 253 aa20.11■□□□□ 0.81
TRIM28-202ENST00000341753 GTPBP8Q8N3Z3 284 aaPredicted RBP20.11■□□□□ 0.81
TRIM28-202ENST00000341753 ADAD2Q8NCV1 583 aaKnown RBP20.11■□□□□ 0.81
TRIM28-202ENST00000341753 ZNF563Q8TA94 476 aa20.11■□□□□ 0.81
TRIM28-202ENST00000341753 ASB5Q8WWX0 329 aa20.11■□□□□ 0.81
TRIM28-202ENST00000341753 EDAQ92838 391 aa20.11■□□□□ 0.81
TRIM28-202ENST00000341753 MRGPRFQ96AM1 343 aa20.11■□□□□ 0.81
TRIM28-202ENST00000341753 SLC25A44Q96H78 314 aaPredicted RBP20.11■□□□□ 0.81
TRIM28-202ENST00000341753 SELENOIQ9C0D9 397 aa20.11■□□□□ 0.81
TRIM28-202ENST00000341753 TMEM14AQ9Y6G1 99 aa20.11■□□□□ 0.81
TRIM28-202ENST00000341753 TACR3P29371 465 aa20.11■□□□□ 0.81
TRIM28-202ENST00000341753 NPBWR1P48145 328 aa20.11■□□□□ 0.81
TRIM28-202ENST00000341753 H3F3CQ6NXT2 135 aa20.11■□□□□ 0.81
TRIM28-202ENST00000341753 RAB11FIP2Q7L804 512 aa20.11■□□□□ 0.81
TRIM28-202ENST00000341753 MARCH3Q86UD3 253 aa20.11■□□□□ 0.81
TRIM28-202ENST00000341753 RTN4RL2Q86UN3 420 aa20.11■□□□□ 0.81
TRIM28-202ENST00000341753 SLC25A36Q96CQ1 311 aa20.11■□□□□ 0.81
TRIM28-202ENST00000341753 CPNE2Q96FN4 548 aaPredicted RBP20.11■□□□□ 0.81
TRIM28-202ENST00000341753 OR10A5Q9H207 317 aa20.11■□□□□ 0.81
TRIM28-202ENST00000341753 MKL2Q9ULH7 1088 aa20.11■□□□□ 0.81
TRIM28-202ENST00000341753 KCNK7Q9Y2U2 307 aa20.11■□□□□ 0.81
TRIM28-202ENST00000341753 A0A0B4J2A0 478 aa20.1■□□□□ 0.81
TRIM28-202ENST00000341753 H2AFB1P0C5Y9 115 aa20.1■□□□□ 0.81
TRIM28-202ENST00000341753 ZBTB25P24278 435 aa20.1■□□□□ 0.81
TRIM28-202ENST00000341753 KCNJ3P48549 501 aa20.1■□□□□ 0.81
TRIM28-202ENST00000341753 IL13RA1P78552 427 aa20.1■□□□□ 0.81
TRIM28-202ENST00000341753 ELOCQ15369 112 aa20.1■□□□□ 0.81
TRIM28-202ENST00000341753 KLHL26Q53HC5 615 aa20.1■□□□□ 0.81
TRIM28-202ENST00000341753 VWA2Q5GFL6 755 aa20.1■□□□□ 0.81
TRIM28-202ENST00000341753 LYG2Q86SG7 212 aa20.1■□□□□ 0.81
TRIM28-202ENST00000341753 LILRB1Q8NHL6 650 aaPredicted RBP20.1■□□□□ 0.81
TRIM28-202ENST00000341753 DGAT2Q96PD7 388 aa20.1■□□□□ 0.81
TRIM28-202ENST00000341753 EDEM2Q9BV94 578 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms