RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 ALPLP05186 524 aa13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 ZNF823P16415 610 aa13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 NR4A1P22736 598 aa13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 FMO3P31513 532 aa13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 APOBEC3AP31941 199 aaPredicted RBP13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 GDI2P50395 445 aaKnown RBP13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 ALDH3A2P51648 485 aa13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 DEFB113Q30KQ7 82 aa13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 AGAP6Q5VW22 663 aa13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 CORO6Q6QEF8 472 aa13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 LINC00346Q8IVM7 164 aa13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 MUC15Q8N387 334 aa13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 C9orf16Q9BUW7 83 aa13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 CDADC1Q9BWV3 514 aa13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 GABARAPL3Q9BY60 117 aa13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 PRRG3Q9BZD7 231 aa13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 OR51V1Q9H2C8 321 aa13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 OR51B6Q9H340 312 aa13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 HINT3Q9NQE9 182 aaKnown RBP13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 PLEK2Q9NYT0 353 aa13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 USE1Q9NZ43 259 aa13.74□□□□□ -0.21
CCDC28A-201ENST00000332797 LOC100509620A0A075B734 347 aa13.73□□□□□ -0.21
CCDC28A-201ENST00000332797 RER1O15258 196 aa13.73□□□□□ -0.21
CCDC28A-201ENST00000332797 SNAP29O95721 258 aa13.73□□□□□ -0.21
CCDC28A-201ENST00000332797 FAM157BP0CG42 384 aa13.73□□□□□ -0.21
CCDC28A-201ENST00000332797 THBS4P35443 961 aa13.73□□□□□ -0.21
CCDC28A-201ENST00000332797 POLR2IP36954 125 aaKnown RBP13.73□□□□□ -0.21
CCDC28A-201ENST00000332797 HTR5AP47898 357 aa13.73□□□□□ -0.21
CCDC28A-201ENST00000332797 ADAM8P78325 824 aa13.73□□□□□ -0.21
CCDC28A-201ENST00000332797 NKX6-1P78426 367 aaPredicted RBP13.73□□□□□ -0.21
CCDC28A-201ENST00000332797 RCN1Q15293 331 aa13.73□□□□□ -0.21
CCDC28A-201ENST00000332797 SLX4IPQ5VYV7 408 aa13.73□□□□□ -0.21
CCDC28A-201ENST00000332797 VASH1Q7L8A9 365 aaPredicted RBP13.73□□□□□ -0.21
CCDC28A-201ENST00000332797 CXXC5Q7LFL8 322 aaKnown RBP13.73□□□□□ -0.21
CCDC28A-201ENST00000332797 DTX2Q86UW9 622 aa13.73□□□□□ -0.21
CCDC28A-201ENST00000332797 CPOQ8IVL8 374 aa13.73□□□□□ -0.21
CCDC28A-201ENST00000332797 ZNF511Q8NB15 262 aa13.73□□□□□ -0.21
CCDC28A-201ENST00000332797 OR2AJ1Q8NGZ0 328 aa13.73□□□□□ -0.21
CCDC28A-201ENST00000332797 PTP4A1Q93096 173 aa13.73□□□□□ -0.21
CCDC28A-201ENST00000332797 MBD6Q96DN6 1003 aa13.73□□□□□ -0.21
CCDC28A-201ENST00000332797 POM121L2Q96KW2 1035 aa13.73□□□□□ -0.21
CCDC28A-201ENST00000332797 TRAF4Q9BUZ4 470 aaPredicted RBP13.73□□□□□ -0.21
CCDC28A-201ENST00000332797 CXorf56Q9H5V9 222 aa13.73□□□□□ -0.21
CCDC28A-201ENST00000332797 BEX4Q9NWD9 120 aaPredicted RBP13.73□□□□□ -0.21
CCDC28A-201ENST00000332797 NDRG4Q9ULP0 352 aaKnown RBP13.73□□□□□ -0.21
CCDC28A-201ENST00000332797 COMMD3-BMI1R4GMX3 469 aa13.73□□□□□ -0.21
CCDC28A-201ENST00000332797 AKAP9Q99996 3911 aa13.72□□□□□ -0.21
CCDC28A-201ENST00000332797 DSCAMO60469 2012 aa13.72□□□□□ -0.21
CCDC28A-201ENST00000332797 M0R129 80 aa13.72□□□□□ -0.21
CCDC28A-201ENST00000332797 GPRIN2O60269 458 aa13.72□□□□□ -0.21
CCDC28A-201ENST00000332797 SMPD2O60906 423 aa13.72□□□□□ -0.21
CCDC28A-201ENST00000332797 CD8AP01732 235 aa13.72□□□□□ -0.21
CCDC28A-201ENST00000332797 OR4A8P0C604 315 aa13.72□□□□□ -0.21
CCDC28A-201ENST00000332797 GGT2P36268 569 aa13.72□□□□□ -0.21
CCDC28A-201ENST00000332797 RPS27P42677 84 aaKnown RBP13.72□□□□□ -0.21
CCDC28A-201ENST00000332797 RAB35Q15286 201 aa13.72□□□□□ -0.21
CCDC28A-201ENST00000332797 ADIPOQQ15848 244 aa13.72□□□□□ -0.21
CCDC28A-201ENST00000332797 KLHL12Q53G59 568 aa13.72□□□□□ -0.21
CCDC28A-201ENST00000332797 CCDC92Q53HC0 331 aaPredicted RBP13.72□□□□□ -0.21
CCDC28A-201ENST00000332797 C12orf73Q69YU5 71 aa13.72□□□□□ -0.21
CCDC28A-201ENST00000332797 SLC18B1Q6NT16 456 aa13.72□□□□□ -0.21
CCDC28A-201ENST00000332797 TMEM154Q6P9G4 183 aa13.72□□□□□ -0.21
CCDC28A-201ENST00000332797 BBS1Q8NFJ9 593 aa13.72□□□□□ -0.21
CCDC28A-201ENST00000332797 GJC3Q8NFK1 279 aa13.72□□□□□ -0.21
CCDC28A-201ENST00000332797 IGFBPL1Q8WX77 278 aa13.72□□□□□ -0.21
CCDC28A-201ENST00000332797 EME1Q96AY2 570 aa13.72□□□□□ -0.21
CCDC28A-201ENST00000332797 ZNF442Q9H7R0 627 aa13.72□□□□□ -0.21
CCDC28A-201ENST00000332797 WDR76Q9H967 626 aa13.72□□□□□ -0.21
CCDC28A-201ENST00000332797 CBLN4Q9NTU7 201 aa13.72□□□□□ -0.21
CCDC28A-201ENST00000332797 CYB5R1Q9UHQ9 305 aa13.72□□□□□ -0.21
CCDC28A-201ENST00000332797 KCNG2Q9UJ96 466 aa13.72□□□□□ -0.21
CCDC28A-201ENST00000332797 SYNGR3O43761 229 aa13.71□□□□□ -0.21
CCDC28A-201ENST00000332797 PRKYO43930 277 aa13.71□□□□□ -0.21
CCDC28A-201ENST00000332797 GLCEO94923 617 aa13.71□□□□□ -0.21
CCDC28A-201ENST00000332797 SPARCP09486 303 aa13.71□□□□□ -0.21
CCDC28A-201ENST00000332797 COX5BP10606 129 aa13.71□□□□□ -0.21
CCDC28A-201ENST00000332797 ANPEPP15144 967 aa13.71□□□□□ -0.21
CCDC28A-201ENST00000332797 SERPINF1P36955 418 aa13.71□□□□□ -0.21
CCDC28A-201ENST00000332797 CDKN1AP38936 164 aa13.71□□□□□ -0.21
CCDC28A-201ENST00000332797 ENTPD1P49961 510 aa13.71□□□□□ -0.21
CCDC28A-201ENST00000332797 ART1P52961 327 aa13.71□□□□□ -0.21
CCDC28A-201ENST00000332797 BLVRAP53004 296 aa13.71□□□□□ -0.21
CCDC28A-201ENST00000332797 RAD23AP54725 363 aa13.71□□□□□ -0.21
CCDC28A-201ENST00000332797 RPS7P62081 194 aaKnown RBP13.71□□□□□ -0.21
CCDC28A-201ENST00000332797 RPS23P62266 143 aaKnown RBP13.71□□□□□ -0.21
CCDC28A-201ENST00000332797 HIST1H3AP68431 136 aa13.71□□□□□ -0.21
CCDC28A-201ENST00000332797 ZIK1Q3SY52 487 aaPredicted RBP13.71□□□□□ -0.21
CCDC28A-201ENST00000332797 HIST2H3PS2Q5TEC6 136 aa13.71□□□□□ -0.21
CCDC28A-201ENST00000332797 LINC01590Q5TEZ4 76 aa13.71□□□□□ -0.21
CCDC28A-201ENST00000332797 CFAP77Q6ZQR2 320 aa13.71□□□□□ -0.21
CCDC28A-201ENST00000332797 ZBTB49Q6ZSB9 765 aa13.71□□□□□ -0.21
CCDC28A-201ENST00000332797 HIST2H3AQ71DI3 136 aa13.71□□□□□ -0.21
CCDC28A-201ENST00000332797 OR1F12Q8NHA8 337 aa13.71□□□□□ -0.21
CCDC28A-201ENST00000332797 ZMYND19Q96E35 227 aaPredicted RBP13.71□□□□□ -0.21
CCDC28A-201ENST00000332797 GRIP2Q9C0E4 1043 aa13.71□□□□□ -0.21
CCDC28A-201ENST00000332797 EIF3KQ9UBQ5 218 aaKnown RBP13.71□□□□□ -0.21
CCDC28A-201ENST00000332797 GDF2Q9UK05 429 aaPredicted RBP13.71□□□□□ -0.21
CCDC28A-201ENST00000332797 PLCE1Q9P212 2302 aa13.71□□□□□ -0.21
CCDC28A-201ENST00000332797 OTOGQ6ZRI0 2925 aa13.7□□□□□ -0.22
CCDC28A-201ENST00000332797 OR6C6A6NF89 314 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms