RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 OR2Z1Q8NG97 314 aa12.43□□□□□ -0.42
CCDC88B-201ENST00000301897 PFN4Q8NHR9 129 aa12.43□□□□□ -0.42
CCDC88B-201ENST00000301897 TMEM239Q8WW34 195 aa12.43□□□□□ -0.42
CCDC88B-201ENST00000301897 HDAC2Q92769 488 aaKnown RBP12.43□□□□□ -0.42
CCDC88B-201ENST00000301897 TAMM41Q96BW9 452 aa12.43□□□□□ -0.42
CCDC88B-201ENST00000301897 ZNF48Q96MX3 618 aaPredicted RBP12.43□□□□□ -0.42
CCDC88B-201ENST00000301897 BAG5Q9UL15 447 aa12.43□□□□□ -0.42
CCDC88B-201ENST00000301897 NDUFAF1Q9Y375 327 aa12.43□□□□□ -0.42
CCDC88B-201ENST00000301897 MED31Q9Y3C7 131 aa12.43□□□□□ -0.42
CCDC88B-201ENST00000301897 IGKV1D-43A0A0B4J1Z2 117 aa12.42□□□□□ -0.42
CCDC88B-201ENST00000301897 A6NIZ1 184 aa12.42□□□□□ -0.42
CCDC88B-201ENST00000301897 ANGPT2O15123 496 aa12.42□□□□□ -0.42
CCDC88B-201ENST00000301897 MSR1P21757 451 aa12.42□□□□□ -0.42
CCDC88B-201ENST00000301897 MTPNP58546 118 aa12.42□□□□□ -0.42
CCDC88B-201ENST00000301897 RAP1BP61224 184 aa12.42□□□□□ -0.42
CCDC88B-201ENST00000301897 RPL27P61353 136 aaKnown RBP12.42□□□□□ -0.42
CCDC88B-201ENST00000301897 RAP1AP62834 184 aa12.42□□□□□ -0.42
CCDC88B-201ENST00000301897 ALG10Q5BKT4 473 aa12.42□□□□□ -0.42
CCDC88B-201ENST00000301897 ZNF774Q6NX45 483 aa12.42□□□□□ -0.42
CCDC88B-201ENST00000301897 SLC27A4Q6P1M0 643 aa12.42□□□□□ -0.42
CCDC88B-201ENST00000301897 FOXL2NBQ6ZUU3 175 aa12.42□□□□□ -0.42
CCDC88B-201ENST00000301897 CCDC80Q76M96 950 aa12.42□□□□□ -0.42
CCDC88B-201ENST00000301897 MOSPD2Q8NHP6 518 aa12.42□□□□□ -0.42
CCDC88B-201ENST00000301897 LRRC8CQ8TDW0 803 aa12.42□□□□□ -0.42
CCDC88B-201ENST00000301897 TSPEARQ8WU66 669 aa12.42□□□□□ -0.42
CCDC88B-201ENST00000301897 TMEM255BQ8WV15 326 aa12.42□□□□□ -0.42
CCDC88B-201ENST00000301897 TMIGD2Q96BF3 282 aa12.42□□□□□ -0.42
CCDC88B-201ENST00000301897 PLEKHA8Q96JA3 519 aa12.42□□□□□ -0.42
CCDC88B-201ENST00000301897 SSBP3Q9BWW4 388 aaPredicted RBP12.42□□□□□ -0.42
CCDC88B-201ENST00000301897 DCAF16Q9NXF7 216 aa12.42□□□□□ -0.42
CCDC88B-201ENST00000301897 RIMS3Q9UJD0 308 aa12.42□□□□□ -0.42
CCDC88B-201ENST00000301897 HIF3AQ9Y2N7 669 aa12.42□□□□□ -0.42
CCDC88B-201ENST00000301897 CD80P33681 288 aa12.41□□□□□ -0.42
CCDC88B-201ENST00000301897 BPIFB3P59826 476 aa12.41□□□□□ -0.42
CCDC88B-201ENST00000301897 SEC61A1P61619 476 aaKnown RBP12.41□□□□□ -0.42
CCDC88B-201ENST00000301897 TOP3AQ13472 1001 aaPredicted RBP12.41□□□□□ -0.42
CCDC88B-201ENST00000301897 LAPTM4AQ15012 233 aa12.41□□□□□ -0.42
CCDC88B-201ENST00000301897 VMACQ2NL98 169 aa12.41□□□□□ -0.42
CCDC88B-201ENST00000301897 SPRNQ5BIV9 151 aa12.41□□□□□ -0.42
CCDC88B-201ENST00000301897 SPATC1Q76KD6 591 aa12.41□□□□□ -0.42
CCDC88B-201ENST00000301897 NKAIN4Q8IVV8 208 aa12.41□□□□□ -0.42
CCDC88B-201ENST00000301897 STON2Q8WXE9 905 aa12.41□□□□□ -0.42
CCDC88B-201ENST00000301897 UPRTQ96BW1 309 aa12.41□□□□□ -0.42
CCDC88B-201ENST00000301897 SIGLEC11Q96RL6 698 aa12.41□□□□□ -0.42
CCDC88B-201ENST00000301897 BEX1Q9HBH7 125 aa12.41□□□□□ -0.42
CCDC88B-201ENST00000301897 MIOXQ9UGB7 285 aa12.41□□□□□ -0.42
CCDC88B-201ENST00000301897 SH3GLB1Q9Y371 365 aa12.41□□□□□ -0.42
CCDC88B-201ENST00000301897 CEACAM18A8MTB9 384 aa12.4□□□□□ -0.42
CCDC88B-201ENST00000301897 TMEM178BH3BS89 294 aa12.4□□□□□ -0.42
CCDC88B-201ENST00000301897 J3QW42 95 aa12.4□□□□□ -0.42
CCDC88B-201ENST00000301897 FSTL3O95633 263 aa12.4□□□□□ -0.42
CCDC88B-201ENST00000301897 PLATP00750 562 aa12.4□□□□□ -0.42
CCDC88B-201ENST00000301897 KNG1P01042 644 aa12.4□□□□□ -0.42
CCDC88B-201ENST00000301897 IFNA14P01570 189 aa12.4□□□□□ -0.42
CCDC88B-201ENST00000301897 WNT2P09544 360 aa12.4□□□□□ -0.42
CCDC88B-201ENST00000301897 IFNA8P32881 189 aa12.4□□□□□ -0.42
CCDC88B-201ENST00000301897 GUCY1A3Q02108 690 aa12.4□□□□□ -0.42
CCDC88B-201ENST00000301897 SCRN3Q0VDG4 424 aa12.4□□□□□ -0.42
CCDC88B-201ENST00000301897 NFYCQ13952 458 aa12.4□□□□□ -0.42
CCDC88B-201ENST00000301897 SELPLGQ14242 412 aa12.4□□□□□ -0.42
CCDC88B-201ENST00000301897 ENDOGQ14249 297 aaKnown RBP12.4□□□□□ -0.42
CCDC88B-201ENST00000301897 ANKDD1AQ495B1 522 aa12.4□□□□□ -0.42
CCDC88B-201ENST00000301897 C17orf107Q6ZR85 190 aa12.4□□□□□ -0.42
CCDC88B-201ENST00000301897 OR4F5Q8NH21 305 aa12.4□□□□□ -0.42
CCDC88B-201ENST00000301897 OR10A6Q8NH74 314 aa12.4□□□□□ -0.42
CCDC88B-201ENST00000301897 ITLN1Q8WWA0 313 aa12.4□□□□□ -0.42
CCDC88B-201ENST00000301897 HAVCR1Q96D42 359 aa12.4□□□□□ -0.42
CCDC88B-201ENST00000301897 OR2V2Q96R30 315 aa12.4□□□□□ -0.42
CCDC88B-201ENST00000301897 C20orf141Q9NUB4 165 aa12.4□□□□□ -0.42
CCDC88B-201ENST00000301897 IGHV2-70DA0A0C4DH43 119 aa12.39□□□□□ -0.43
CCDC88B-201ENST00000301897 A0A1W2PPL8 197 aa12.39□□□□□ -0.43
CCDC88B-201ENST00000301897 CRYBA1P05813 215 aa12.39□□□□□ -0.43
CCDC88B-201ENST00000301897 IGHV4-38-2P0DP08 117 aa12.39□□□□□ -0.43
CCDC88B-201ENST00000301897 RAC2P15153 192 aa12.39□□□□□ -0.43
CCDC88B-201ENST00000301897 RPS2P15880 293 aaKnown RBP12.39□□□□□ -0.43
CCDC88B-201ENST00000301897 MDKP21741 143 aaPredicted RBP12.39□□□□□ -0.43
CCDC88B-201ENST00000301897 HTR5AP47898 357 aa12.39□□□□□ -0.43
CCDC88B-201ENST00000301897 GNB2P62879 340 aa12.39□□□□□ -0.43
CCDC88B-201ENST00000301897 PAX2Q02962 417 aa12.39□□□□□ -0.43
CCDC88B-201ENST00000301897 Q6ZR03 302 aa12.39□□□□□ -0.43
CCDC88B-201ENST00000301897 NLRC3Q7RTR2 1065 aa12.39□□□□□ -0.43
CCDC88B-201ENST00000301897 C1orf87Q8N0U7 546 aa12.39□□□□□ -0.43
CCDC88B-201ENST00000301897 RAB40AQ8WXH6 277 aa12.39□□□□□ -0.43
CCDC88B-201ENST00000301897 PTP4A1Q93096 173 aa12.39□□□□□ -0.43
CCDC88B-201ENST00000301897 CMBLQ96DG6 245 aa12.39□□□□□ -0.43
CCDC88B-201ENST00000301897 BPIFA2Q96DR5 249 aa12.39□□□□□ -0.43
CCDC88B-201ENST00000301897 SH3GL1Q99961 368 aa12.39□□□□□ -0.43
CCDC88B-201ENST00000301897 PRDM13Q9H4Q3 707 aa12.39□□□□□ -0.43
CCDC88B-201ENST00000301897 GCM1Q9NP62 436 aa12.39□□□□□ -0.43
CCDC88B-201ENST00000301897 NOX4Q9NPH5 578 aa12.39□□□□□ -0.43
CCDC88B-201ENST00000301897 POLE4Q9NR33 117 aa12.39□□□□□ -0.43
CCDC88B-201ENST00000301897 LRRC30A6NM36 301 aa12.38□□□□□ -0.43
CCDC88B-201ENST00000301897 SGCEO43556 437 aa12.38□□□□□ -0.43
CCDC88B-201ENST00000301897 AHCYL1O43865 530 aa12.38□□□□□ -0.43
CCDC88B-201ENST00000301897 DOK2O60496 412 aa12.38□□□□□ -0.43
CCDC88B-201ENST00000301897 GPANK1O95872 356 aa12.38□□□□□ -0.43
CCDC88B-201ENST00000301897 SRP9P49458 86 aaKnown RBP12.38□□□□□ -0.43
CCDC88B-201ENST00000301897 RGS6P49758 472 aa12.38□□□□□ -0.43
CCDC88B-201ENST00000301897 GZMMP51124 257 aa12.38□□□□□ -0.43
CCDC88B-201ENST00000301897 MMP16P51512 607 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms