RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 TEX13DA0A0J9YY54 714 aaPredicted RBP12.16□□□□□ -0.46
SKA3-201ENST00000298260 H7C1Q1 480 aa12.16□□□□□ -0.46
SKA3-201ENST00000298260 DBIP07108 87 aaKnown RBP12.16□□□□□ -0.46
SKA3-201ENST00000298260 ERGP11308 486 aa12.16□□□□□ -0.46
SKA3-201ENST00000298260 KIR3DL2P43630 455 aa12.16□□□□□ -0.46
SKA3-201ENST00000298260 TSFMP43897 325 aaKnown RBP12.16□□□□□ -0.46
SKA3-201ENST00000298260 HTR5AP47898 357 aa12.16□□□□□ -0.46
SKA3-201ENST00000298260 ACTBP60709 375 aa12.16□□□□□ -0.46
SKA3-201ENST00000298260 RAB2AP61019 212 aa12.16□□□□□ -0.46
SKA3-201ENST00000298260 ACTG1P63261 375 aa12.16□□□□□ -0.46
SKA3-201ENST00000298260 ELOCQ15369 112 aa12.16□□□□□ -0.46
SKA3-201ENST00000298260 ZIC1Q15915 447 aa12.16□□□□□ -0.46
SKA3-201ENST00000298260 MTSS1LQ765P7 747 aa12.16□□□□□ -0.46
SKA3-201ENST00000298260 SSX9Q7RTT3 188 aa12.16□□□□□ -0.46
SKA3-201ENST00000298260 ARRDC1Q8N5I2 433 aa12.16□□□□□ -0.46
SKA3-201ENST00000298260 C15orf40Q8WUR7 153 aa12.16□□□□□ -0.46
SKA3-201ENST00000298260 ARRDC3Q96B67 414 aa12.16□□□□□ -0.46
SKA3-201ENST00000298260 VWCEQ96DN2 955 aa12.16□□□□□ -0.46
SKA3-201ENST00000298260 TMEM41AQ96HV5 264 aa12.16□□□□□ -0.46
SKA3-201ENST00000298260 IGSF21Q96ID5 467 aa12.16□□□□□ -0.46
SKA3-201ENST00000298260 EDEM2Q9BV94 578 aa12.16□□□□□ -0.46
SKA3-201ENST00000298260 C17orf113A0A1B0GUU1 675 aa12.15□□□□□ -0.46
SKA3-201ENST00000298260 WIPF3A6NGB9 483 aa12.15□□□□□ -0.46
SKA3-201ENST00000298260 AP4M1O00189 453 aa12.15□□□□□ -0.46
SKA3-201ENST00000298260 MBTPS2O43462 519 aa12.15□□□□□ -0.46
SKA3-201ENST00000298260 GMFGO60234 142 aa12.15□□□□□ -0.46
SKA3-201ENST00000298260 CDC40O60508 579 aaKnown RBP eCLIP12.15□□□□□ -0.46
SKA3-201ENST00000298260 PMP2P02689 132 aa12.15□□□□□ -0.46
SKA3-201ENST00000298260 MT-ND4LP03901 98 aa12.15□□□□□ -0.46
SKA3-201ENST00000298260 SLC35G4P0C7Q5 338 aa12.15□□□□□ -0.46
SKA3-201ENST00000298260 SPOCK1Q08629 439 aa12.15□□□□□ -0.46
SKA3-201ENST00000298260 IRF4Q15306 451 aa12.15□□□□□ -0.46
SKA3-201ENST00000298260 WDR38Q5JTN6 314 aa12.15□□□□□ -0.46
SKA3-201ENST00000298260 PAPD4Q6PIY7 484 aaKnown RBP12.15□□□□□ -0.46
SKA3-201ENST00000298260 MDGA2Q7Z553 956 aa12.15□□□□□ -0.46
SKA3-201ENST00000298260 SPRED2Q7Z698 418 aa12.15□□□□□ -0.46
SKA3-201ENST00000298260 NRROSQ86YC3 692 aa12.15□□□□□ -0.46
SKA3-201ENST00000298260 C10orf53Q8N6V4 93 aa12.15□□□□□ -0.46
SKA3-201ENST00000298260 CSNK1A1LQ8N752 337 aa12.15□□□□□ -0.46
SKA3-201ENST00000298260 RPS4Y2Q8TD47 263 aa12.15□□□□□ -0.46
SKA3-201ENST00000298260 PHB2Q99623 299 aa12.15□□□□□ -0.46
SKA3-201ENST00000298260 TOLLIPQ9H0E2 274 aa12.15□□□□□ -0.46
SKA3-201ENST00000298260 FGF19O95750 216 aa12.15□□□□□ -0.46
SKA3-201ENST00000298260 ABHD16AO95870 558 aa12.15□□□□□ -0.46
SKA3-201ENST00000298260 CT62P0C5K7 136 aa12.15□□□□□ -0.46
SKA3-201ENST00000298260 EN2P19622 333 aaPredicted RBP12.15□□□□□ -0.46
SKA3-201ENST00000298260 GSK3AP49840 483 aa12.15□□□□□ -0.46
SKA3-201ENST00000298260 GTF3AQ92664 365 aaKnown RBP12.15□□□□□ -0.46
SKA3-201ENST00000298260 GSKIPQ9P0R6 139 aa12.15□□□□□ -0.46
SKA3-201ENST00000298260 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.15□□□□□ -0.46
SKA3-201ENST00000298260 DMRT1Q9Y5R6 373 aa12.15□□□□□ -0.46
SKA3-201ENST00000298260 NUP210LQ5VU65 1888 aa12.15□□□□□ -0.46
SKA3-201ENST00000298260 LOC100289279A0A1B0GTE1 492 aa12.15□□□□□ -0.47
SKA3-201ENST00000298260 C1QTNF3-AMACRE9PGA6 284 aa12.15□□□□□ -0.47
SKA3-201ENST00000298260 FHITP49789 147 aa12.15□□□□□ -0.47
SKA3-201ENST00000298260 CASP6P55212 293 aa12.15□□□□□ -0.47
SKA3-201ENST00000298260 DMWDQ09019 674 aa12.15□□□□□ -0.47
SKA3-201ENST00000298260 C21orf62-AS1Q17RA5 79 aa12.15□□□□□ -0.47
SKA3-201ENST00000298260 GFI1BQ5VTD9 330 aa12.15□□□□□ -0.47
SKA3-201ENST00000298260 IL34Q6ZMJ4 242 aa12.15□□□□□ -0.47
SKA3-201ENST00000298260 PRSS41Q7RTY9 318 aa12.15□□□□□ -0.47
SKA3-201ENST00000298260 GATSQ8NAP1 163 aa12.15□□□□□ -0.47
SKA3-201ENST00000298260 MARCH1Q8TCQ1 289 aa12.15□□□□□ -0.47
SKA3-201ENST00000298260 MITD1Q8WV92 249 aa12.15□□□□□ -0.47
SKA3-201ENST00000298260 SMARCD2Q92925 531 aa12.15□□□□□ -0.47
SKA3-201ENST00000298260 S100PBPQ96BU1 408 aa12.15□□□□□ -0.47
SKA3-201ENST00000298260 SMOC1Q9H4F8 434 aa12.15□□□□□ -0.47
SKA3-201ENST00000298260 LAMP5Q9UJQ1 280 aa12.15□□□□□ -0.47
SKA3-201ENST00000298260 MMP24Q9Y5R2 645 aa12.15□□□□□ -0.47
SKA3-201ENST00000298260 FAM157AC9JC47 383 aa12.14□□□□□ -0.47
SKA3-201ENST00000298260 LMX1BO60663 402 aa12.14□□□□□ -0.47
SKA3-201ENST00000298260 STK17BO94768 372 aa12.14□□□□□ -0.47
SKA3-201ENST00000298260 THBS1P07996 1170 aa12.14□□□□□ -0.47
SKA3-201ENST00000298260 FCGR3AP08637 254 aa12.14□□□□□ -0.47
SKA3-201ENST00000298260 HRH1P35367 487 aa12.14□□□□□ -0.47
SKA3-201ENST00000298260 ACAA2P42765 397 aaKnown RBP12.14□□□□□ -0.47
SKA3-201ENST00000298260 NDUFA6P56556 154 aa12.14□□□□□ -0.47
SKA3-201ENST00000298260 PMPCAQ10713 525 aa12.14□□□□□ -0.47
SKA3-201ENST00000298260 SLC25A42Q86VD7 318 aa12.14□□□□□ -0.47
SKA3-201ENST00000298260 JAGN1Q8N5M9 183 aa12.14□□□□□ -0.47
SKA3-201ENST00000298260 TMEM229BQ8NBD8 167 aa12.14□□□□□ -0.47
SKA3-201ENST00000298260 CHST4Q8NCG5 386 aa12.14□□□□□ -0.47
SKA3-201ENST00000298260 TMEM52Q8NDY8 209 aa12.14□□□□□ -0.47
SKA3-201ENST00000298260 TMEM104Q8NE00 496 aa12.14□□□□□ -0.47
SKA3-201ENST00000298260 PHOSPHO2Q8TCD6 241 aa12.14□□□□□ -0.47
SKA3-201ENST00000298260 GPR148Q8TDV2 347 aa12.14□□□□□ -0.47
SKA3-201ENST00000298260 SPACA1Q9HBV2 294 aa12.14□□□□□ -0.47
SKA3-201ENST00000298260 CNTRLQ7Z7A1 2325 aa12.14□□□□□ -0.47
SKA3-201ENST00000298260 KIF26BQ2KJY2 2108 aa12.14□□□□□ -0.47
SKA3-201ENST00000298260 TRBV23OR9-2A0A075B6M9 112 aa12.14□□□□□ -0.47
SKA3-201ENST00000298260 TRBV5-7A0A0A0MS05 114 aa12.14□□□□□ -0.47
SKA3-201ENST00000298260 GLCEO94923 617 aa12.14□□□□□ -0.47
SKA3-201ENST00000298260 PNPP00491 289 aa12.14□□□□□ -0.47
SKA3-201ENST00000298260 CD1AP06126 327 aa12.14□□□□□ -0.47
SKA3-201ENST00000298260 CD5P06127 495 aa12.14□□□□□ -0.47
SKA3-201ENST00000298260 PPICP45877 212 aa12.14□□□□□ -0.47
SKA3-201ENST00000298260 S100A10P60903 97 aa12.14□□□□□ -0.47
SKA3-201ENST00000298260 SRSF4Q08170 494 aaKnown RBP12.14□□□□□ -0.47
SKA3-201ENST00000298260 RNASE10Q5GAN6 216 aaKnown RBP12.14□□□□□ -0.47
SKA3-201ENST00000298260 Q6ZRG5 221 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms