RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 NTMQ9P121 344 aa13.99□□□□□ -0.17
SHH-201ENST00000297261 SRFP11831 508 aa13.99□□□□□ -0.17
SHH-201ENST00000297261 KIR2DL1P43626 348 aaPredicted RBP13.99□□□□□ -0.17
SHH-201ENST00000297261 TMEM156Q8N614 296 aa13.99□□□□□ -0.17
SHH-201ENST00000297261 NUDT22Q9BRQ3 303 aa13.99□□□□□ -0.17
SHH-201ENST00000297261 OR11A1Q9GZK7 315 aa13.99□□□□□ -0.17
SHH-201ENST00000297261 PPP1R3EQ9H7J1 279 aa13.99□□□□□ -0.17
SHH-201ENST00000297261 NDUFB6O95139 128 aa13.99□□□□□ -0.17
SHH-201ENST00000297261 FCARP24071 287 aa13.99□□□□□ -0.17
SHH-201ENST00000297261 SFTPDP35247 375 aa13.99□□□□□ -0.17
SHH-201ENST00000297261 PCBP3P57721 371 aaKnown RBP13.99□□□□□ -0.17
SHH-201ENST00000297261 HNF4GQ14541 408 aa13.99□□□□□ -0.17
SHH-201ENST00000297261 Q6ZRG5 221 aa13.99□□□□□ -0.17
SHH-201ENST00000297261 FOXQ1Q9C009 403 aa13.99□□□□□ -0.17
SHH-201ENST00000297261 SERINC4A6NH21 518 aa13.98□□□□□ -0.17
SHH-201ENST00000297261 FABP1P07148 127 aa13.98□□□□□ -0.17
SHH-201ENST00000297261 SPIN2AQ99865 258 aa13.98□□□□□ -0.17
SHH-201ENST00000297261 SPIN2BQ9BPZ2 258 aa13.98□□□□□ -0.17
SHH-201ENST00000297261 PPP4R1LQ9P1A2 415 aa13.98□□□□□ -0.17
SHH-201ENST00000297261 ZNF98A6NK75 572 aa13.98□□□□□ -0.17
SHH-201ENST00000297261 BLVRBP30043 206 aaPredicted RBP13.98□□□□□ -0.17
SHH-201ENST00000297261 RAB13P51153 203 aa13.98□□□□□ -0.17
SHH-201ENST00000297261 ZNF136P52737 540 aa13.98□□□□□ -0.17
SHH-201ENST00000297261 HIST2H3AQ71DI3 136 aa13.98□□□□□ -0.17
SHH-201ENST00000297261 OR2W3Q7Z3T1 314 aa13.98□□□□□ -0.17
SHH-201ENST00000297261 PCYT1BQ9Y5K3 369 aaPredicted RBP13.98□□□□□ -0.17
SHH-201ENST00000297261 FNDC1Q4ZHG4 1894 aaPredicted RBP13.98□□□□□ -0.17
SHH-201ENST00000297261 DOCK4Q8N1I0 1966 aa13.98□□□□□ -0.17
SHH-201ENST00000297261 TRAV1-2A0A0B4J238 106 aa13.98□□□□□ -0.17
SHH-201ENST00000297261 IMPA2O14732 288 aa13.98□□□□□ -0.17
SHH-201ENST00000297261 NUDT21O43809 227 aaKnown RBP13.98□□□□□ -0.17
SHH-201ENST00000297261 IL5P05113 134 aa13.98□□□□□ -0.17
SHH-201ENST00000297261 ZNF43P17038 809 aa13.98□□□□□ -0.17
SHH-201ENST00000297261 CCDC71LQ8N9Z2 235 aa13.98□□□□□ -0.17
SHH-201ENST00000297261 ZNF264O43296 627 aa13.98□□□□□ -0.17
SHH-201ENST00000297261 TRHRP34981 398 aaPredicted RBP13.98□□□□□ -0.17
SHH-201ENST00000297261 RNF212Q495C1 297 aa13.98□□□□□ -0.17
SHH-201ENST00000297261 ZNF425Q6IV72 752 aa13.98□□□□□ -0.17
SHH-201ENST00000297261 OR1J2Q8NGS2 313 aa13.98□□□□□ -0.17
SHH-201ENST00000297261 PELI1Q96FA3 418 aa13.98□□□□□ -0.17
SHH-201ENST00000297261 SGCZQ96LD1 299 aa13.98□□□□□ -0.17
SHH-201ENST00000297261 RBM24Q9BX46 236 aaKnown RBP13.98□□□□□ -0.17
SHH-201ENST00000297261 ZNF160Q9HCG1 818 aa13.98□□□□□ -0.17
SHH-201ENST00000297261 SLC22A13Q9Y226 551 aa13.98□□□□□ -0.17
SHH-201ENST00000297261 TIMM8BQ9Y5J9 83 aaPredicted RBP13.98□□□□□ -0.17
SHH-201ENST00000297261 RFPL4AA6NLU0 287 aa13.97□□□□□ -0.17
SHH-201ENST00000297261 RFPL4AL1F8VTS6 287 aa13.97□□□□□ -0.17
SHH-201ENST00000297261 NTN1O95631 604 aa13.97□□□□□ -0.17
SHH-201ENST00000297261 BAMBIQ13145 260 aa13.97□□□□□ -0.17
SHH-201ENST00000297261 CAMK2DQ13557 499 aa13.97□□□□□ -0.17
SHH-201ENST00000297261 MELKQ14680 651 aa13.97□□□□□ -0.17
SHH-201ENST00000297261 ANGPTL5Q86XS5 388 aa13.97□□□□□ -0.17
SHH-201ENST00000297261 CBLN2Q8IUK8 224 aa13.97□□□□□ -0.17
SHH-201ENST00000297261 GABRG3Q99928 467 aa13.97□□□□□ -0.17
SHH-201ENST00000297261 CMSS1Q9BQ75 279 aaKnown RBP13.97□□□□□ -0.17
SHH-201ENST00000297261 TAS2R4Q9NYW5 299 aa13.97□□□□□ -0.17
SHH-201ENST00000297261 SLC22A7Q9Y694 548 aa13.97□□□□□ -0.17
SHH-201ENST00000297261 PIKFYVEQ9Y2I7 2098 aa13.97□□□□□ -0.17
SHH-201ENST00000297261 NPIPA2E9PIF3 369 aa13.97□□□□□ -0.17
SHH-201ENST00000297261 NPIPA3F8WFD2 350 aa13.97□□□□□ -0.17
SHH-201ENST00000297261 SULT1A3P0DMM9 295 aa13.97□□□□□ -0.17
SHH-201ENST00000297261 SULT1A4P0DMN0 295 aa13.97□□□□□ -0.17
SHH-201ENST00000297261 FOSL1P15407 271 aa13.97□□□□□ -0.17
SHH-201ENST00000297261 MEOX2P50222 304 aa13.97□□□□□ -0.17
SHH-201ENST00000297261 MAT1AQ00266 395 aaKnown RBP13.97□□□□□ -0.17
SHH-201ENST00000297261 PLXDC1Q8IUK5 500 aa13.97□□□□□ -0.17
SHH-201ENST00000297261 LINC01555Q8NAE3 123 aa13.97□□□□□ -0.17
SHH-201ENST00000297261 BVESQ8NE79 360 aa13.97□□□□□ -0.17
SHH-201ENST00000297261 SCMH1Q96GD3 660 aa13.97□□□□□ -0.17
SHH-201ENST00000297261 NIPSNAP3BQ9BS92 247 aa13.97□□□□□ -0.17
SHH-201ENST00000297261 NMNAT2Q9BZQ4 307 aa13.97□□□□□ -0.17
SHH-201ENST00000297261 EXOSC3Q9NQT5 275 aaKnown RBP13.97□□□□□ -0.17
SHH-201ENST00000297261 ZMAT5Q9UDW3 170 aaKnown RBP13.97□□□□□ -0.17
SHH-201ENST00000297261 SIGLEC5O15389 551 aa13.97□□□□□ -0.17
SHH-201ENST00000297261 LAMTOR5O43504 91 aa13.97□□□□□ -0.17
SHH-201ENST00000297261 BCL2L11O43521 198 aa13.97□□□□□ -0.17
SHH-201ENST00000297261 SUSD5O60279 629 aa13.97□□□□□ -0.17
SHH-201ENST00000297261 RPS2P15880 293 aaKnown RBP13.97□□□□□ -0.17
SHH-201ENST00000297261 SDHAP31040 664 aa13.97□□□□□ -0.17
SHH-201ENST00000297261 SIGLEC14Q08ET2 396 aa13.97□□□□□ -0.17
SHH-201ENST00000297261 KCNAB1Q14722 419 aa13.97□□□□□ -0.17
SHH-201ENST00000297261 EXOSC6Q5RKV6 272 aaKnown RBP13.97□□□□□ -0.17
SHH-201ENST00000297261 RNF165Q6ZSG1 346 aa13.97□□□□□ -0.17
SHH-201ENST00000297261 OR1S2Q8NGQ3 325 aa13.97□□□□□ -0.17
SHH-201ENST00000297261 SPACA5Q96QH8 159 aa13.97□□□□□ -0.17
SHH-201ENST00000297261 TINAGL1Q9GZM7 467 aaPredicted RBP13.97□□□□□ -0.17
SHH-201ENST00000297261 BANF2Q9H503 90 aa13.97□□□□□ -0.17
SHH-201ENST00000297261 ALKBH4Q9NXW9 302 aa13.97□□□□□ -0.17
SHH-201ENST00000297261 CLEC1BQ9P126 229 aa13.97□□□□□ -0.17
SHH-201ENST00000297261 ASH2LQ9UBL3 628 aa13.97□□□□□ -0.17
SHH-201ENST00000297261 CYB5R1Q9UHQ9 305 aa13.97□□□□□ -0.17
SHH-201ENST00000297261 UMAD1C9J7I0 102 aa13.96□□□□□ -0.17
SHH-201ENST00000297261 PLPP2O43688 288 aa13.96□□□□□ -0.17
SHH-201ENST00000297261 SIGLEC6O43699 453 aa13.96□□□□□ -0.17
SHH-201ENST00000297261 OR2C1O95371 312 aa13.96□□□□□ -0.17
SHH-201ENST00000297261 CFDP00746 253 aaPredicted RBP13.96□□□□□ -0.17
SHH-201ENST00000297261 GABRA1P14867 456 aa13.96□□□□□ -0.17
SHH-201ENST00000297261 MRPS34P82930 218 aaKnown RBP13.96□□□□□ -0.17
SHH-201ENST00000297261 SLC35D3Q5M8T2 416 aa13.96□□□□□ -0.17
SHH-201ENST00000297261 TMEM65Q6PI78 240 aa13.96□□□□□ -0.17
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