RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 NLRC3Q7RTR2 1065 aa17.47■□□□□ 0.39
UPF1-201ENST00000262803 OR5D18Q8NGL1 313 aa17.47■□□□□ 0.39
UPF1-201ENST00000262803 TAAR9Q96RI9 348 aa17.47■□□□□ 0.39
UPF1-201ENST00000262803 ERVMER34-1Q9H9K5 563 aa17.47■□□□□ 0.39
UPF1-201ENST00000262803 CCDC163A0A0D9SF12 145 aa17.47■□□□□ 0.39
UPF1-201ENST00000262803 CSF3P09919 207 aa17.47■□□□□ 0.39
UPF1-201ENST00000262803 PMPCAQ10713 525 aa17.47■□□□□ 0.39
UPF1-201ENST00000262803 CPEB4Q17RY0 729 aaKnown RBP eCLIP17.47■□□□□ 0.39
UPF1-201ENST00000262803 ACSM5Q6NUN0 579 aa17.47■□□□□ 0.39
UPF1-201ENST00000262803 Q6ZRG5 221 aa17.47■□□□□ 0.39
UPF1-201ENST00000262803 PDCD1LG2Q9BQ51 273 aa17.47■□□□□ 0.39
UPF1-201ENST00000262803 HDGFL3Q9Y3E1 203 aa17.47■□□□□ 0.39
UPF1-201ENST00000262803 LRP5O75197 1615 aa17.47■□□□□ 0.39
UPF1-201ENST00000262803 G3V3Y1 287 aa17.47■□□□□ 0.39
UPF1-201ENST00000262803 SBK2P0C263 348 aa17.47■□□□□ 0.39
UPF1-201ENST00000262803 RIMKLAQ8IXN7 391 aa17.47■□□□□ 0.39
UPF1-201ENST00000262803 CDCA4Q9BXL8 241 aa17.47■□□□□ 0.39
UPF1-201ENST00000262803 C12orf49Q9H741 205 aa17.47■□□□□ 0.39
UPF1-201ENST00000262803 BCL2L10Q9HD36 194 aa17.47■□□□□ 0.39
UPF1-201ENST00000262803 ZNF346Q9UL40 294 aaKnown RBP17.47■□□□□ 0.39
UPF1-201ENST00000262803 ARRDC5A6NEK1 342 aa17.47■□□□□ 0.39
UPF1-201ENST00000262803 SERPINF1P36955 418 aa17.47■□□□□ 0.39
UPF1-201ENST00000262803 HTR4Q13639 388 aa17.47■□□□□ 0.39
UPF1-201ENST00000262803 ZNF626Q68DY1 528 aa17.47■□□□□ 0.39
UPF1-201ENST00000262803 ARV1Q9H2C2 271 aa17.47■□□□□ 0.39
UPF1-201ENST00000262803 TBC1D29Q9UFV1 150 aa17.47■□□□□ 0.39
UPF1-201ENST00000262803 MICAL3Q7RTP6 2002 aa17.47■□□□□ 0.39
UPF1-201ENST00000262803 A0A1B0GTL3 188 aa17.46■□□□□ 0.39
UPF1-201ENST00000262803 SHISA7A6NL88 538 aa17.46■□□□□ 0.39
UPF1-201ENST00000262803 FAM166BA8MTA8 275 aa17.46■□□□□ 0.39
UPF1-201ENST00000262803 KRBOX1C9JBD0 128 aa17.46■□□□□ 0.39
UPF1-201ENST00000262803 IRS1P35568 1242 aa17.46■□□□□ 0.39
UPF1-201ENST00000262803 CA13Q8N1Q1 262 aa17.46■□□□□ 0.39
UPF1-201ENST00000262803 S1PR3Q99500 378 aa17.46■□□□□ 0.39
UPF1-201ENST00000262803 S1PR5Q9H228 398 aa17.46■□□□□ 0.39
UPF1-201ENST00000262803 TBX21Q9UL17 535 aa17.46■□□□□ 0.39
UPF1-201ENST00000262803 COA3Q9Y2R0 106 aaPredicted RBP17.46■□□□□ 0.39
UPF1-201ENST00000262803 ZAR1LA6NP61 321 aa17.46■□□□□ 0.39
UPF1-201ENST00000262803 HOXC8P31273 242 aa17.46■□□□□ 0.39
UPF1-201ENST00000262803 OXA1LQ15070 435 aa17.46■□□□□ 0.39
UPF1-201ENST00000262803 SYS1Q8N2H4 156 aa17.46■□□□□ 0.39
UPF1-201ENST00000262803 SLC7A6Q92536 515 aa17.46■□□□□ 0.39
UPF1-201ENST00000262803 SDF2Q99470 211 aa17.46■□□□□ 0.39
UPF1-201ENST00000262803 GPX5O75715 221 aa17.46■□□□□ 0.39
UPF1-201ENST00000262803 ADRA2CP18825 462 aa17.46■□□□□ 0.39
UPF1-201ENST00000262803 TBXA2RP21731 343 aa17.46■□□□□ 0.39
UPF1-201ENST00000262803 BMI1P35226 326 aa17.46■□□□□ 0.39
UPF1-201ENST00000262803 SRP9P49458 86 aaKnown RBP17.46■□□□□ 0.39
UPF1-201ENST00000262803 MRPS34P82930 218 aaKnown RBP17.46■□□□□ 0.39
UPF1-201ENST00000262803 BTN1A1Q13410 526 aa17.46■□□□□ 0.39
UPF1-201ENST00000262803 FAM199XQ6PEV8 388 aaPredicted RBP17.46■□□□□ 0.39
UPF1-201ENST00000262803 TMEM200AQ86VY9 491 aa17.46■□□□□ 0.39
UPF1-201ENST00000262803 OR1N1Q8NGS0 311 aa17.46■□□□□ 0.39
UPF1-201ENST00000262803 PHIPQ8WWQ0 1821 aa17.46■□□□□ 0.39
UPF1-201ENST00000262803 TSTD3H0UI37 97 aa17.46■□□□□ 0.39
UPF1-201ENST00000262803 SMLR1H3BR10 107 aa17.46■□□□□ 0.39
UPF1-201ENST00000262803 NDUFB7P17568 137 aa17.46■□□□□ 0.39
UPF1-201ENST00000262803 GLYATL3Q5SZD4 288 aa17.46■□□□□ 0.39
UPF1-201ENST00000262803 KDF1Q8NAX2 398 aaPredicted RBP17.46■□□□□ 0.39
UPF1-201ENST00000262803 ATF6BQ99941 703 aa17.46■□□□□ 0.39
UPF1-201ENST00000262803 OR51B4Q9Y5P0 310 aa17.46■□□□□ 0.39
UPF1-201ENST00000262803 TAAR5O14804 337 aa17.45■□□□□ 0.38
UPF1-201ENST00000262803 AKR7A3O95154 331 aa17.45■□□□□ 0.38
UPF1-201ENST00000262803 SNRNP70P08621 437 aaKnown RBP17.45■□□□□ 0.38
UPF1-201ENST00000262803 OGFOD3Q6PK18 319 aa17.45■□□□□ 0.38
UPF1-201ENST00000262803 SLC51BQ86UW2 128 aa17.45■□□□□ 0.38
UPF1-201ENST00000262803 NT5CQ8TCD5 201 aa17.45■□□□□ 0.38
UPF1-201ENST00000262803 M0R082 166 aa17.45■□□□□ 0.38
UPF1-201ENST00000262803 CLEC3BP05452 202 aa17.45■□□□□ 0.38
UPF1-201ENST00000262803 TAS2R45P59539 299 aa17.45■□□□□ 0.38
UPF1-201ENST00000262803 BTG1P62324 171 aa17.45■□□□□ 0.38
UPF1-201ENST00000262803 PAQR6Q6TCH4 344 aa17.45■□□□□ 0.38
UPF1-201ENST00000262803 CARFQ8N187 725 aa17.45■□□□□ 0.38
UPF1-201ENST00000262803 FAM71CQ8NEG0 241 aa17.45■□□□□ 0.38
UPF1-201ENST00000262803 SLC30A7Q8NEW0 376 aa17.45■□□□□ 0.38
UPF1-201ENST00000262803 OR1M1Q8NGA1 313 aa17.45■□□□□ 0.38
UPF1-201ENST00000262803 MITD1Q8WV92 249 aa17.45■□□□□ 0.38
UPF1-201ENST00000262803 RNF150Q9ULK6 438 aa17.45■□□□□ 0.38
UPF1-201ENST00000262803 PCDHGA5Q9Y5G8 931 aa17.45■□□□□ 0.38
UPF1-201ENST00000262803 NUP205Q92621 2012 aa17.45■□□□□ 0.38
UPF1-201ENST00000262803 M0QZ24 198 aa17.45■□□□□ 0.38
UPF1-201ENST00000262803 ST8SIA5O15466 376 aa17.45■□□□□ 0.38
UPF1-201ENST00000262803 DVL3Q92997 716 aaPredicted RBP17.45■□□□□ 0.38
UPF1-201ENST00000262803 OR11A1Q9GZK7 315 aa17.45■□□□□ 0.38
UPF1-201ENST00000262803 C20orf85Q9H1P6 137 aa17.45■□□□□ 0.38
UPF1-201ENST00000262803 HINT3Q9NQE9 182 aaKnown RBP17.45■□□□□ 0.38
UPF1-201ENST00000262803 MYH14Q7Z406 1995 aaKnown RBP17.45■□□□□ 0.38
UPF1-201ENST00000262803 A0A0B4J2A0 478 aa17.45■□□□□ 0.38
UPF1-201ENST00000262803 RFXAPO00287 272 aa17.45■□□□□ 0.38
UPF1-201ENST00000262803 SULT1C4O75897 302 aa17.45■□□□□ 0.38
UPF1-201ENST00000262803 LAP3P28838 519 aa17.45■□□□□ 0.38
UPF1-201ENST00000262803 CLN3Q13286 438 aa17.45■□□□□ 0.38
UPF1-201ENST00000262803 ZNF718Q3SXZ3 478 aa17.45■□□□□ 0.38
UPF1-201ENST00000262803 PIGTQ969N2 578 aa17.45■□□□□ 0.38
UPF1-201ENST00000262803 ZMAT3Q9HA38 289 aaKnown RBP17.45■□□□□ 0.38
UPF1-201ENST00000262803 SHPKQ9UHJ6 478 aa17.45■□□□□ 0.38
UPF1-201ENST00000262803 CROCCQ5TZA2 2017 aa17.45■□□□□ 0.38
UPF1-201ENST00000262803 TRBV5-4A0A0C4DH59 114 aa17.45■□□□□ 0.38
UPF1-201ENST00000262803 PRRT4C9JH25 899 aa17.45■□□□□ 0.38
UPF1-201ENST00000262803 SLC19A1P41440 591 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms