RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 SLC22A24Q8N4F4 322 aa13.78□□□□□ -0.2
CLN3-264ENST00000637985 PFN4Q8NHR9 129 aa13.78□□□□□ -0.2
CLN3-264ENST00000637985 ST7LQ8TDW4 575 aa13.78□□□□□ -0.2
CLN3-264ENST00000637985 LZICQ8WZA0 190 aa13.78□□□□□ -0.2
CLN3-264ENST00000637985 RCN3Q96D15 328 aa13.78□□□□□ -0.2
CLN3-264ENST00000637985 TMEM38BQ9NVV0 291 aa13.78□□□□□ -0.2
CLN3-264ENST00000637985 C1RLQ9NZP8 487 aa13.78□□□□□ -0.2
CLN3-264ENST00000637985 STX18Q9P2W9 335 aaKnown RBP13.78□□□□□ -0.2
CLN3-264ENST00000637985 SLC7A8Q9UHI5 535 aa13.78□□□□□ -0.2
CLN3-264ENST00000637985 MED31Q9Y3C7 131 aa13.78□□□□□ -0.2
CLN3-264ENST00000637985 IGLV3-9A0A075B6K5 115 aa13.77□□□□□ -0.21
CLN3-264ENST00000637985 MGRN1O60291 552 aa13.77□□□□□ -0.21
CLN3-264ENST00000637985 CCDC22O60826 627 aa13.77□□□□□ -0.21
CLN3-264ENST00000637985 SHOX2O60902 331 aaPredicted RBP13.77□□□□□ -0.21
CLN3-264ENST00000637985 SERPINA5P05154 406 aa13.77□□□□□ -0.21
CLN3-264ENST00000637985 QDPRP09417 244 aa13.77□□□□□ -0.21
CLN3-264ENST00000637985 TSPAN19P0C672 248 aa13.77□□□□□ -0.21
CLN3-264ENST00000637985 MDH1P40925 334 aaKnown RBP13.77□□□□□ -0.21
CLN3-264ENST00000637985 DAP3P51398 398 aaKnown RBP13.77□□□□□ -0.21
CLN3-264ENST00000637985 CLRN1P58418 232 aa13.77□□□□□ -0.21
CLN3-264ENST00000637985 HLXQ14774 488 aaPredicted RBP13.77□□□□□ -0.21
CLN3-264ENST00000637985 TPD52L3Q96J77 140 aa13.77□□□□□ -0.21
CLN3-264ENST00000637985 TSPAN32Q96QS1 320 aa13.77□□□□□ -0.21
CLN3-264ENST00000637985 SEPHS2Q99611 448 aa13.77□□□□□ -0.21
CLN3-264ENST00000637985 HOPXQ9BPY8 73 aaPredicted RBP13.77□□□□□ -0.21
CLN3-264ENST00000637985 MRPL13Q9BYD1 178 aaKnown RBP13.77□□□□□ -0.21
CLN3-264ENST00000637985 INIPQ9NRY2 104 aa13.77□□□□□ -0.21
CLN3-264ENST00000637985 UBAP1Q9NZ09 502 aa13.77□□□□□ -0.21
CLN3-264ENST00000637985 INSIG2Q9Y5U4 225 aa13.77□□□□□ -0.21
CLN3-264ENST00000637985 TENM3Q9P273 2699 aa13.77□□□□□ -0.21
CLN3-264ENST00000637985 NPIPB13A6NJU9 1138 aa13.76□□□□□ -0.21
CLN3-264ENST00000637985 NPIPB4C9JG80 1138 aa13.76□□□□□ -0.21
CLN3-264ENST00000637985 MCIDASD6RGH6 385 aa13.76□□□□□ -0.21
CLN3-264ENST00000637985 HOXA3O43365 443 aaPredicted RBP13.76□□□□□ -0.21
CLN3-264ENST00000637985 IGHMP01871 453 aa13.76□□□□□ -0.21
CLN3-264ENST00000637985 F13BP05160 661 aa13.76□□□□□ -0.21
CLN3-264ENST00000637985 VSIG8P0DPA2 414 aa13.76□□□□□ -0.21
CLN3-264ENST00000637985 ZNF250P15622 560 aa13.76□□□□□ -0.21
CLN3-264ENST00000637985 LSP1P33241 339 aa13.76□□□□□ -0.21
CLN3-264ENST00000637985 AQP2P41181 271 aa13.76□□□□□ -0.21
CLN3-264ENST00000637985 ZNF84P51523 738 aa13.76□□□□□ -0.21
CLN3-264ENST00000637985 ZNF133P52736 654 aaPredicted RBP13.76□□□□□ -0.21
CLN3-264ENST00000637985 SELENOVP59797 346 aa13.76□□□□□ -0.21
CLN3-264ENST00000637985 RAB39AQ14964 217 aa13.76□□□□□ -0.21
CLN3-264ENST00000637985 RGS7BPQ6MZT1 257 aaPredicted RBP13.76□□□□□ -0.21
CLN3-264ENST00000637985 JAZF1Q86VZ6 243 aa13.76□□□□□ -0.21
CLN3-264ENST00000637985 POU5F2Q8N7G0 328 aa13.76□□□□□ -0.21
CLN3-264ENST00000637985 NOXO1Q8NFA2 376 aa13.76□□□□□ -0.21
CLN3-264ENST00000637985 FAM110DQ8TAY7 271 aaPredicted RBP13.76□□□□□ -0.21
CLN3-264ENST00000637985 SNX33Q8WV41 574 aa13.76□□□□□ -0.21
CLN3-264ENST00000637985 ASB10Q8WXI3 467 aa13.76□□□□□ -0.21
CLN3-264ENST00000637985 MCHR2Q969V1 340 aa13.76□□□□□ -0.21
CLN3-264ENST00000637985 PRRC1Q96M27 445 aa13.76□□□□□ -0.21
CLN3-264ENST00000637985 MRI1Q9BV20 369 aa13.76□□□□□ -0.21
CLN3-264ENST00000637985 C20orf141Q9NUB4 165 aa13.76□□□□□ -0.21
CLN3-264ENST00000637985 DECR2Q9NUI1 292 aa13.76□□□□□ -0.21
CLN3-264ENST00000637985 CMTM6Q9NX76 183 aa13.76□□□□□ -0.21
CLN3-264ENST00000637985 A4GNTQ9UNA3 340 aa13.76□□□□□ -0.21
CLN3-264ENST00000637985 SLC22A23A1A5C7 686 aa13.75□□□□□ -0.21
CLN3-264ENST00000637985 C3orf80F5H4A9 247 aa13.75□□□□□ -0.21
CLN3-264ENST00000637985 G3V4G9 280 aa13.75□□□□□ -0.21
CLN3-264ENST00000637985 TRMUO75648 421 aaKnown RBP13.75□□□□□ -0.21
CLN3-264ENST00000637985 PRB2P02812 416 aaPredicted RBP13.75□□□□□ -0.21
CLN3-264ENST00000637985 CRYBA1P05813 215 aa13.75□□□□□ -0.21
CLN3-264ENST00000637985 PATE4P0C8F1 98 aa13.75□□□□□ -0.21
CLN3-264ENST00000637985 IGHV4-38-2P0DP08 117 aa13.75□□□□□ -0.21
CLN3-264ENST00000637985 COX4I1P13073 169 aa13.75□□□□□ -0.21
CLN3-264ENST00000637985 ACADSP16219 412 aa13.75□□□□□ -0.21
CLN3-264ENST00000637985 RBMXP38159 391 aaKnown RBP13.75□□□□□ -0.21
CLN3-264ENST00000637985 KLF3P57682 345 aaPredicted RBP13.75□□□□□ -0.21
CLN3-264ENST00000637985 TAF11Q15544 211 aa13.75□□□□□ -0.21
CLN3-264ENST00000637985 SLC36A2Q495M3 483 aa13.75□□□□□ -0.21
CLN3-264ENST00000637985 TMEM53Q6P2H8 277 aa13.75□□□□□ -0.21
CLN3-264ENST00000637985 REC114Q7Z4M0 266 aa13.75□□□□□ -0.21
CLN3-264ENST00000637985 ZNF584Q8IVC4 421 aa13.75□□□□□ -0.21
CLN3-264ENST00000637985 SLC15A3Q8IY34 581 aa13.75□□□□□ -0.21
CLN3-264ENST00000637985 FGFBP3Q8TAT2 258 aa13.75□□□□□ -0.21
CLN3-264ENST00000637985 CCL17Q92583 94 aa13.75□□□□□ -0.21
CLN3-264ENST00000637985 ZNF347Q96SE7 839 aa13.75□□□□□ -0.21
CLN3-264ENST00000637985 SH3GL3Q99963 347 aa13.75□□□□□ -0.21
CLN3-264ENST00000637985 C1orf198Q9H425 327 aa13.75□□□□□ -0.21
CLN3-264ENST00000637985 PRDM13Q9H4Q3 707 aa13.75□□□□□ -0.21
CLN3-264ENST00000637985 EFCAB1Q9HAE3 211 aa13.75□□□□□ -0.21
CLN3-264ENST00000637985 SAP30LQ9HAJ7 183 aa13.75□□□□□ -0.21
CLN3-264ENST00000637985 SLCO1C1Q9NYB5 712 aa13.75□□□□□ -0.21
CLN3-264ENST00000637985 MDFIC2A0A1B0GVS7 189 aa13.74□□□□□ -0.21
CLN3-264ENST00000637985 ISPDA4D126 451 aa13.74□□□□□ -0.21
CLN3-264ENST00000637985 SRRM5B3KS81 715 aa13.74□□□□□ -0.21
CLN3-264ENST00000637985 NDUFAB1O14561 156 aa13.74□□□□□ -0.21
CLN3-264ENST00000637985 TPD52L2O43399 206 aaKnown RBP13.74□□□□□ -0.21
CLN3-264ENST00000637985 PLATP00750 562 aa13.74□□□□□ -0.21
CLN3-264ENST00000637985 PTHP01270 115 aa13.74□□□□□ -0.21
CLN3-264ENST00000637985 NR2C1P13056 603 aa13.74□□□□□ -0.21
CLN3-264ENST00000637985 LIPEQ05469 1076 aa13.74□□□□□ -0.21
CLN3-264ENST00000637985 PAX8Q06710 450 aa13.74□□□□□ -0.21
CLN3-264ENST00000637985 VAX1Q5SQQ9 334 aa13.74□□□□□ -0.21
CLN3-264ENST00000637985 C10orf128Q5T292 105 aa13.74□□□□□ -0.21
CLN3-264ENST00000637985 ARMC4Q5T2S8 1044 aa13.74□□□□□ -0.21
CLN3-264ENST00000637985 FIP1L1Q6UN15 594 aaKnown RBP13.74□□□□□ -0.21
CLN3-264ENST00000637985 SLC16A14Q7RTX9 510 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms