RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 HAVCR2Q8TDQ0 301 aa16.26■□□□□ 0.19
CLN3-254ENST00000637050 NABP1Q96AH0 204 aa16.26■□□□□ 0.19
CLN3-254ENST00000637050 ZNF837Q96EG3 531 aaPredicted RBP16.26■□□□□ 0.19
CLN3-254ENST00000637050 CDADC1Q9BWV3 514 aa16.26■□□□□ 0.19
CLN3-254ENST00000637050 NELFAQ9H3P2 528 aa16.26■□□□□ 0.19
CLN3-254ENST00000637050 CRLF2Q9HC73 371 aa16.26■□□□□ 0.19
CLN3-254ENST00000637050 EMC7Q9NPA0 242 aa16.26■□□□□ 0.19
CLN3-254ENST00000637050 SLCO1C1Q9NYB5 712 aa16.26■□□□□ 0.19
CLN3-254ENST00000637050 IKZF2Q9UKS7 526 aa16.26■□□□□ 0.19
CLN3-254ENST00000637050 LHFPL6Q9Y693 200 aa16.26■□□□□ 0.19
CLN3-254ENST00000637050 A0A1W2PPW3 197 aa16.25■□□□□ 0.19
CLN3-254ENST00000637050 TMEM8BA6NDV4 472 aa16.25■□□□□ 0.19
CLN3-254ENST00000637050 OR6C65A6NJZ3 312 aa16.25■□□□□ 0.19
CLN3-254ENST00000637050 LRRTM2O43300 516 aa16.25■□□□□ 0.19
CLN3-254ENST00000637050 CD53P19397 219 aa16.25■□□□□ 0.19
CLN3-254ENST00000637050 MSR1P21757 451 aa16.25■□□□□ 0.19
CLN3-254ENST00000637050 EDNRAP25101 427 aa16.25■□□□□ 0.19
CLN3-254ENST00000637050 HOXD11P31277 338 aaPredicted RBP16.25■□□□□ 0.19
CLN3-254ENST00000637050 GUCA1AP43080 201 aaPredicted RBP16.25■□□□□ 0.19
CLN3-254ENST00000637050 NCS1P62166 190 aa16.25■□□□□ 0.19
CLN3-254ENST00000637050 MRPS34P82930 218 aaKnown RBP16.25■□□□□ 0.19
CLN3-254ENST00000637050 TSPO2Q5TGU0 170 aa16.25■□□□□ 0.19
CLN3-254ENST00000637050 RPL22L1Q6P5R6 122 aaKnown RBP16.25■□□□□ 0.19
CLN3-254ENST00000637050 CD200R1LQ6Q8B3 271 aa16.25■□□□□ 0.19
CLN3-254ENST00000637050 YIPF7Q8N8F6 280 aa16.25■□□□□ 0.19
CLN3-254ENST00000637050 RPS4Y2Q8TD47 263 aa16.25■□□□□ 0.19
CLN3-254ENST00000637050 TMEM203Q969S6 136 aa16.25■□□□□ 0.19
CLN3-254ENST00000637050 ALKBH3Q96Q83 286 aaPredicted RBP16.25■□□□□ 0.19
CLN3-254ENST00000637050 TRIB1Q96RU8 372 aa16.25■□□□□ 0.19
CLN3-254ENST00000637050 CENPOQ9BU64 300 aa16.25■□□□□ 0.19
CLN3-254ENST00000637050 GPR35Q9HC97 309 aa16.25■□□□□ 0.19
CLN3-254ENST00000637050 GLRX2Q9NS18 164 aa16.25■□□□□ 0.19
CLN3-254ENST00000637050 CACNA1AO00555 2505 aa16.25■□□□□ 0.19
CLN3-254ENST00000637050 LAMA5O15230 3695 aa16.24■□□□□ 0.19
CLN3-254ENST00000637050 LOC100506127A0A0U1RQW1 187 aa16.24■□□□□ 0.19
CLN3-254ENST00000637050 WNT11O96014 354 aa16.24■□□□□ 0.19
CLN3-254ENST00000637050 CD1AP06126 327 aa16.24■□□□□ 0.19
CLN3-254ENST00000637050 AGTR1P30556 359 aa16.24■□□□□ 0.19
CLN3-254ENST00000637050 PSMB10P40306 273 aa16.24■□□□□ 0.19
CLN3-254ENST00000637050 CDK5R1Q15078 307 aa16.24■□□□□ 0.19
CLN3-254ENST00000637050 SGCAQ16586 387 aa16.24■□□□□ 0.19
CLN3-254ENST00000637050 SOWAHCQ53LP3 525 aaPredicted RBP16.24■□□□□ 0.19
CLN3-254ENST00000637050 CORO6Q6QEF8 472 aa16.24■□□□□ 0.19
CLN3-254ENST00000637050 LRRN1Q6UXK5 716 aa16.24■□□□□ 0.19
CLN3-254ENST00000637050 ZC3HAV1Q7Z2W4 902 aaKnown RBP16.24■□□□□ 0.19
CLN3-254ENST00000637050 P4HA3Q7Z4N8 544 aa16.24■□□□□ 0.19
CLN3-254ENST00000637050 HTRA1Q92743 480 aa16.24■□□□□ 0.19
CLN3-254ENST00000637050 GMPPAQ96IJ6 420 aaPredicted RBP16.24■□□□□ 0.19
CLN3-254ENST00000637050 TM9SF2Q99805 663 aa16.24■□□□□ 0.19
CLN3-254ENST00000637050 MROQ9BYG7 248 aa16.24■□□□□ 0.19
CLN3-254ENST00000637050 ELOVL3Q9HB03 270 aa16.24■□□□□ 0.19
CLN3-254ENST00000637050 IGF2RP11717 2491 aa16.24■□□□□ 0.19
CLN3-254ENST00000637050 SS18L1O75177 396 aaPredicted RBP16.24■□□□□ 0.19
CLN3-254ENST00000637050 STK11Q15831 433 aa16.24■□□□□ 0.19
CLN3-254ENST00000637050 ACSF3Q4G176 576 aaPredicted RBP16.24■□□□□ 0.19
CLN3-254ENST00000637050 ARL9Q6T311 187 aa16.24■□□□□ 0.19
CLN3-254ENST00000637050 NUFIP2Q7Z417 695 aaKnown RBP16.24■□□□□ 0.19
CLN3-254ENST00000637050 KRT77Q7Z794 578 aa16.24■□□□□ 0.19
CLN3-254ENST00000637050 NDNFQ8TB73 568 aa16.24■□□□□ 0.19
CLN3-254ENST00000637050 RNF133Q8WVZ7 376 aa16.24■□□□□ 0.19
CLN3-254ENST00000637050 WNT2BQ93097 391 aa16.24■□□□□ 0.19
CLN3-254ENST00000637050 APH1AQ96BI3 265 aa16.24■□□□□ 0.19
CLN3-254ENST00000637050 SMIM19Q96E16 107 aa16.24■□□□□ 0.19
CLN3-254ENST00000637050 TRMT61AQ96FX7 289 aaKnown RBP16.24■□□□□ 0.19
CLN3-254ENST00000637050 MAP6Q96JE9 813 aa16.24■□□□□ 0.19
CLN3-254ENST00000637050 PGLYRP3Q96LB9 341 aa16.24■□□□□ 0.19
CLN3-254ENST00000637050 ZNF416Q9BWM5 594 aa16.24■□□□□ 0.19
CLN3-254ENST00000637050 C1orf198Q9H425 327 aa16.24■□□□□ 0.19
CLN3-254ENST00000637050 SLC7A10Q9NS82 523 aa16.24■□□□□ 0.19
CLN3-254ENST00000637050 GDF2Q9UK05 429 aaPredicted RBP16.24■□□□□ 0.19
CLN3-254ENST00000637050 SSR3Q9UNL2 185 aa16.24■□□□□ 0.19
CLN3-254ENST00000637050 POLR1DQ9Y2S0 133 aa16.24■□□□□ 0.19
CLN3-254ENST00000637050 RPL36A-HNRNPH2H7BZ11 118 aa16.23■□□□□ 0.19
CLN3-254ENST00000637050 NPR2P20594 1047 aa16.23■□□□□ 0.19
CLN3-254ENST00000637050 TGFBR1P36897 503 aa16.23■□□□□ 0.19
CLN3-254ENST00000637050 FABP5Q01469 135 aa16.23■□□□□ 0.19
CLN3-254ENST00000637050 ROR2Q01974 943 aaKnown RBP16.23■□□□□ 0.19
CLN3-254ENST00000637050 ENDOGQ14249 297 aaKnown RBP16.23■□□□□ 0.19
CLN3-254ENST00000637050 CEACAM16Q2WEN9 425 aa16.23■□□□□ 0.19
CLN3-254ENST00000637050 FAM27BQ5VT28 67 aa16.23■□□□□ 0.19
CLN3-254ENST00000637050 DEGS2Q6QHC5 323 aa16.23■□□□□ 0.19
CLN3-254ENST00000637050 OR2AJ1Q8NGZ0 328 aa16.23■□□□□ 0.19
CLN3-254ENST00000637050 COQ7Q99807 217 aa16.23■□□□□ 0.19
CLN3-254ENST00000637050 DCUN1D5Q9BTE7 237 aa16.23■□□□□ 0.19
CLN3-254ENST00000637050 TMED9Q9BVK6 235 aa16.23■□□□□ 0.19
CLN3-254ENST00000637050 PRORYQ9H606 182 aa16.23■□□□□ 0.19
CLN3-254ENST00000637050 EXOSC4Q9NPD3 245 aaKnown RBP16.23■□□□□ 0.19
CLN3-254ENST00000637050 TMEM38BQ9NVV0 291 aa16.23■□□□□ 0.19
CLN3-254ENST00000637050 ASH2LQ9UBL3 628 aa16.23■□□□□ 0.19
CLN3-254ENST00000637050 TRDV1A0A1B0GX56 115 aa16.22■□□□□ 0.19
CLN3-254ENST00000637050 ZNF254O75437 659 aa16.22■□□□□ 0.19
CLN3-254ENST00000637050 RPP14O95059 124 aaKnown RBP16.22■□□□□ 0.19
CLN3-254ENST00000637050 HLA-DPB1P04440 258 aa16.22■□□□□ 0.19
CLN3-254ENST00000637050 GALP22466 123 aa16.22■□□□□ 0.19
CLN3-254ENST00000637050 FGF9P31371 208 aaPredicted RBP16.22■□□□□ 0.19
CLN3-254ENST00000637050 UGT2B10P36537 528 aa16.22■□□□□ 0.19
CLN3-254ENST00000637050 TDGF1P3P51864 188 aa16.22■□□□□ 0.19
CLN3-254ENST00000637050 NANOS3P60323 173 aaKnown RBP16.22■□□□□ 0.19
CLN3-254ENST00000637050 SLC3A1Q07837 685 aa16.22■□□□□ 0.19
CLN3-254ENST00000637050 GUSBP1Q15486 140 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms