RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 OR6V1Q8N148 313 aa15.71■□□□□ 0.11
CLN3-239ENST00000628023 WFDC11Q8NEX6 87 aa15.71■□□□□ 0.11
CLN3-239ENST00000628023 OR10H5Q8NGA6 315 aa15.71■□□□□ 0.11
CLN3-239ENST00000628023 OR9Q1Q8NGQ5 310 aa15.71■□□□□ 0.11
CLN3-239ENST00000628023 OR2T4Q8NH00 348 aa15.71■□□□□ 0.11
CLN3-239ENST00000628023 MS4A3Q96HJ5 214 aa15.71■□□□□ 0.11
CLN3-239ENST00000628023 CIB1Q99828 191 aa15.71■□□□□ 0.11
CLN3-239ENST00000628023 PRRG3Q9BZD7 231 aa15.71■□□□□ 0.11
CLN3-239ENST00000628023 CMC2Q9NRP2 79 aa15.71■□□□□ 0.11
CLN3-239ENST00000628023 B9D1Q9UPM9 204 aa15.71■□□□□ 0.11
CLN3-239ENST00000628023 MOKQ9UQ07 419 aa15.71■□□□□ 0.11
CLN3-239ENST00000628023 ATP23Q9Y6H3 246 aa15.71■□□□□ 0.11
CLN3-239ENST00000628023 ROS1P08922 2347 aa15.7■□□□□ 0.1
CLN3-239ENST00000628023 IGLV1-36A0A0B4J1U3 117 aa15.7■□□□□ 0.1
CLN3-239ENST00000628023 IQCMA0A1B0GVH7 501 aa15.7■□□□□ 0.1
CLN3-239ENST00000628023 SHISA9B4DS77 424 aa15.7■□□□□ 0.1
CLN3-239ENST00000628023 GPANK1O95872 356 aa15.7■□□□□ 0.1
CLN3-239ENST00000628023 ZNF672Q499Z4 452 aaPredicted RBP15.7■□□□□ 0.1
CLN3-239ENST00000628023 TMEM236Q5W0B7 351 aa15.7■□□□□ 0.1
CLN3-239ENST00000628023 ACSM5Q6NUN0 579 aa15.7■□□□□ 0.1
CLN3-239ENST00000628023 MYPOPQ86VE0 399 aaPredicted RBP15.7■□□□□ 0.1
CLN3-239ENST00000628023 NEUROG1Q92886 237 aa15.7■□□□□ 0.1
CLN3-239ENST00000628023 PIGTQ969N2 578 aa15.7■□□□□ 0.1
CLN3-239ENST00000628023 FBXW5Q969U6 566 aa15.7■□□□□ 0.1
CLN3-239ENST00000628023 FBXO17Q96EF6 278 aa15.7■□□□□ 0.1
CLN3-239ENST00000628023 C18orf12Q96KH6 178 aa15.7■□□□□ 0.1
CLN3-239ENST00000628023 C9orf16Q9BUW7 83 aa15.7■□□□□ 0.1
CLN3-239ENST00000628023 ZNF416Q9BWM5 594 aa15.7■□□□□ 0.1
CLN3-239ENST00000628023 OSBPL10Q9BXB5 764 aa15.7■□□□□ 0.1
CLN3-239ENST00000628023 RIBC2Q9H4K1 309 aa15.7■□□□□ 0.1
CLN3-239ENST00000628023 GSX1Q9H4S2 264 aaPredicted RBP15.7■□□□□ 0.1
CLN3-239ENST00000628023 SLC25A19Q9HC21 320 aa15.7■□□□□ 0.1
CLN3-239ENST00000628023 EI24O14681 340 aa15.69■□□□□ 0.1
CLN3-239ENST00000628023 MPZL1O95297 269 aa15.69■□□□□ 0.1
CLN3-239ENST00000628023 PTHP01270 115 aa15.69■□□□□ 0.1
CLN3-239ENST00000628023 SERPINA5P05154 406 aa15.69■□□□□ 0.1
CLN3-239ENST00000628023 ZNF14P17017 642 aaPredicted RBP15.69■□□□□ 0.1
CLN3-239ENST00000628023 PYCR1P32322 319 aa15.69■□□□□ 0.1
CLN3-239ENST00000628023 PPP2R2BQ00005 443 aa15.69■□□□□ 0.1
CLN3-239ENST00000628023 CDK5Q00535 292 aa15.69■□□□□ 0.1
CLN3-239ENST00000628023 GALK2Q01415 458 aa15.69■□□□□ 0.1
CLN3-239ENST00000628023 SCRN3Q0VDG4 424 aa15.69■□□□□ 0.1
CLN3-239ENST00000628023 DBPQ10586 325 aaPredicted RBP15.69■□□□□ 0.1
CLN3-239ENST00000628023 DAG1Q14118 895 aa15.69■□□□□ 0.1
CLN3-239ENST00000628023 ENDOGQ14249 297 aaKnown RBP15.69■□□□□ 0.1
CLN3-239ENST00000628023 PABPC1L2AQ5JQF8 200 aa15.69■□□□□ 0.1
CLN3-239ENST00000628023 OTPQ5XKR4 325 aa15.69■□□□□ 0.1
CLN3-239ENST00000628023 UGT2A3Q6UWM9 527 aa15.69■□□□□ 0.1
CLN3-239ENST00000628023 C20orf204Q6ZNR8 217 aa15.69■□□□□ 0.1
CLN3-239ENST00000628023 ZBTB46Q86UZ6 589 aa15.69■□□□□ 0.1
CLN3-239ENST00000628023 IL17RDQ8NFM7 739 aa15.69■□□□□ 0.1
CLN3-239ENST00000628023 C11orf40Q8WZ69 217 aa15.69■□□□□ 0.1
CLN3-239ENST00000628023 C1orf198Q9H425 327 aa15.69■□□□□ 0.1
CLN3-239ENST00000628023 HEATR1Q9H583 2144 aaKnown RBP15.69■□□□□ 0.1
CLN3-239ENST00000628023 CISD1Q9NZ45 108 aaKnown RBP15.69■□□□□ 0.1
CLN3-239ENST00000628023 IGHV2OR16-5A0A0B4J2B6 119 aa15.68■□□□□ 0.1
CLN3-239ENST00000628023 FAM183AA6NL82 134 aa15.68■□□□□ 0.1
CLN3-239ENST00000628023 SURF4O15260 269 aa15.68■□□□□ 0.1
CLN3-239ENST00000628023 SMPD2O60906 423 aa15.68■□□□□ 0.1
CLN3-239ENST00000628023 SCG5P05408 212 aa15.68■□□□□ 0.1
CLN3-239ENST00000628023 GYPBP06028 91 aa15.68■□□□□ 0.1
CLN3-239ENST00000628023 MMP7P09237 267 aaPredicted RBP15.68■□□□□ 0.1
CLN3-239ENST00000628023 GAAP10253 952 aa15.68■□□□□ 0.1
CLN3-239ENST00000628023 HOXB4P17483 251 aaPredicted RBP15.68■□□□□ 0.1
CLN3-239ENST00000628023 CALCRP30988 508 aa15.68■□□□□ 0.1
CLN3-239ENST00000628023 APLNRP35414 380 aa15.68■□□□□ 0.1
CLN3-239ENST00000628023 SLC25A1P53007 311 aa15.68■□□□□ 0.1
CLN3-239ENST00000628023 LSM6P62312 80 aaKnown RBP15.68■□□□□ 0.1
CLN3-239ENST00000628023 AQP6Q13520 282 aa15.68■□□□□ 0.1
CLN3-239ENST00000628023 PTGES3Q15185 160 aaKnown RBP15.68■□□□□ 0.1
CLN3-239ENST00000628023 RCN1Q15293 331 aa15.68■□□□□ 0.1
CLN3-239ENST00000628023 SNAPC1Q16533 368 aa15.68■□□□□ 0.1
CLN3-239ENST00000628023 MEP1BQ16820 701 aa15.68■□□□□ 0.1
CLN3-239ENST00000628023 TBC1D28Q2M2D7 210 aa15.68■□□□□ 0.1
CLN3-239ENST00000628023 ZNF362Q5T0B9 420 aaPredicted RBP15.68■□□□□ 0.1
CLN3-239ENST00000628023 CBR4Q8N4T8 237 aa15.68■□□□□ 0.1
CLN3-239ENST00000628023 SLC30A7Q8NEW0 376 aa15.68■□□□□ 0.1
CLN3-239ENST00000628023 OR51L1Q8NGJ5 315 aa15.68■□□□□ 0.1
CLN3-239ENST00000628023 OR6K6Q8NGW6 343 aa15.68■□□□□ 0.1
CLN3-239ENST00000628023 AKR7LQ8NHP1 331 aa15.68■□□□□ 0.1
CLN3-239ENST00000628023 EME1Q96AY2 570 aa15.68■□□□□ 0.1
CLN3-239ENST00000628023 CCL19Q99731 98 aa15.68■□□□□ 0.1
CLN3-239ENST00000628023 OR2H1Q9GZK4 316 aa15.68■□□□□ 0.1
CLN3-239ENST00000628023 CDH20Q9HBT6 801 aa15.68■□□□□ 0.1
CLN3-239ENST00000628023 FAIMQ9NVQ4 179 aa15.68■□□□□ 0.1
CLN3-239ENST00000628023 TVP23BQ9NYZ1 205 aa15.68■□□□□ 0.1
CLN3-239ENST00000628023 TIMM10BQ9Y5J6 103 aa15.68■□□□□ 0.1
CLN3-239ENST00000628023 PRR23D1E9PI22 279 aaPredicted RBP15.67■□□□□ 0.1
CLN3-239ENST00000628023 INHBBP09529 407 aa15.67■□□□□ 0.1
CLN3-239ENST00000628023 PRR23D2P0DMB1 279 aaPredicted RBP15.67■□□□□ 0.1
CLN3-239ENST00000628023 ZNF823P16415 610 aa15.67■□□□□ 0.1
CLN3-239ENST00000628023 SPI1P17947 270 aa15.67■□□□□ 0.1
CLN3-239ENST00000628023 ALDH3A2P51648 485 aa15.67■□□□□ 0.1
CLN3-239ENST00000628023 TEKQ02763 1124 aa15.67■□□□□ 0.1
CLN3-239ENST00000628023 PLBD1Q6P4A8 553 aa15.67■□□□□ 0.1
CLN3-239ENST00000628023 VHLLQ6RSH7 139 aa15.67■□□□□ 0.1
CLN3-239ENST00000628023 B3GLCTQ6Y288 498 aa15.67■□□□□ 0.1
CLN3-239ENST00000628023 SYT9Q86SS6 491 aa15.67■□□□□ 0.1
CLN3-239ENST00000628023 ZNF584Q8IVC4 421 aa15.67■□□□□ 0.1
CLN3-239ENST00000628023 ALDH16A1Q8IZ83 802 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms