RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 CITED1Q99966 193 aa12.32□□□□□ -0.44
PNKP-218ENST00000625299 TMEM109Q9BVC6 243 aa12.32□□□□□ -0.44
PNKP-218ENST00000625299 SSBP3Q9BWW4 388 aaPredicted RBP12.32□□□□□ -0.44
PNKP-218ENST00000625299 MRPL13Q9BYD1 178 aaKnown RBP12.32□□□□□ -0.44
PNKP-218ENST00000625299 EVA1AQ9H8M9 152 aa12.32□□□□□ -0.44
PNKP-218ENST00000625299 IL20RAQ9UHF4 553 aa12.32□□□□□ -0.44
PNKP-218ENST00000625299 KLHL21Q9UJP4 597 aa12.32□□□□□ -0.44
PNKP-218ENST00000625299 LRCH1Q9Y2L9 728 aa12.32□□□□□ -0.44
PNKP-218ENST00000625299 UGT2A1Q9Y4X1 527 aa12.32□□□□□ -0.44
PNKP-218ENST00000625299 IGKV1D-43A0A0B4J1Z2 117 aa12.31□□□□□ -0.44
PNKP-218ENST00000625299 IGHV2-70DA0A0C4DH43 119 aa12.31□□□□□ -0.44
PNKP-218ENST00000625299 SRRM5B3KS81 715 aa12.31□□□□□ -0.44
PNKP-218ENST00000625299 H3BSA7 217 aa12.31□□□□□ -0.44
PNKP-218ENST00000625299 PPIBP23284 216 aaKnown RBP12.31□□□□□ -0.44
PNKP-218ENST00000625299 UGT2B15P54855 530 aa12.31□□□□□ -0.44
PNKP-218ENST00000625299 STX1BP61266 288 aa12.31□□□□□ -0.44
PNKP-218ENST00000625299 GNB2P62879 340 aa12.31□□□□□ -0.44
PNKP-218ENST00000625299 PSG7Q13046 419 aa12.31□□□□□ -0.44
PNKP-218ENST00000625299 CDK5R2Q13319 367 aa12.31□□□□□ -0.44
PNKP-218ENST00000625299 LRIF1Q5T3J3 769 aa12.31□□□□□ -0.44
PNKP-218ENST00000625299 ZNF774Q6NX45 483 aa12.31□□□□□ -0.44
PNKP-218ENST00000625299 HDDC2Q7Z4H3 204 aa12.31□□□□□ -0.44
PNKP-218ENST00000625299 ZER1Q7Z7L7 766 aa12.31□□□□□ -0.44
PNKP-218ENST00000625299 C1orf174Q8IYL3 243 aa12.31□□□□□ -0.44
PNKP-218ENST00000625299 ALDH16A1Q8IZ83 802 aa12.31□□□□□ -0.44
PNKP-218ENST00000625299 MUC20Q8N307 709 aaPredicted RBP12.31□□□□□ -0.44
PNKP-218ENST00000625299 AENQ8WTP8 325 aaKnown RBP12.31□□□□□ -0.44
PNKP-218ENST00000625299 THOC1Q96FV9 657 aaKnown RBP12.31□□□□□ -0.44
PNKP-218ENST00000625299 C4orf45Q96LM5 186 aa12.31□□□□□ -0.44
PNKP-218ENST00000625299 SAMD8Q96LT4 415 aa12.31□□□□□ -0.44
PNKP-218ENST00000625299 SIGLEC11Q96RL6 698 aa12.31□□□□□ -0.44
PNKP-218ENST00000625299 RBM4BQ9BQ04 359 aaKnown RBP12.31□□□□□ -0.44
PNKP-218ENST00000625299 OR2H1Q9GZK4 316 aa12.31□□□□□ -0.44
PNKP-218ENST00000625299 WNT5BQ9H1J7 359 aa12.31□□□□□ -0.44
PNKP-218ENST00000625299 IKZF5Q9H5V7 419 aa12.31□□□□□ -0.44
PNKP-218ENST00000625299 TMEM38AQ9H6F2 299 aa12.31□□□□□ -0.44
PNKP-218ENST00000625299 ELOVL3Q9HB03 270 aa12.31□□□□□ -0.44
PNKP-218ENST00000625299 INIPQ9NRY2 104 aa12.31□□□□□ -0.44
PNKP-218ENST00000625299 C1RLQ9NZP8 487 aa12.31□□□□□ -0.44
PNKP-218ENST00000625299 VAPAQ9P0L0 249 aa12.31□□□□□ -0.44
PNKP-218ENST00000625299 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.31□□□□□ -0.44
PNKP-218ENST00000625299 DOCK11Q5JSL3 2073 aa12.31□□□□□ -0.44
PNKP-218ENST00000625299 TRAPPC13A5PLN9 417 aa12.3□□□□□ -0.44
PNKP-218ENST00000625299 SNNO75324 88 aaPredicted RBP12.3□□□□□ -0.44
PNKP-218ENST00000625299 LYPD3O95274 346 aa12.3□□□□□ -0.44
PNKP-218ENST00000625299 ABHD16AO95870 558 aa12.3□□□□□ -0.44
PNKP-218ENST00000625299 THRBP10828 461 aa12.3□□□□□ -0.44
PNKP-218ENST00000625299 GSTM3P21266 225 aa12.3□□□□□ -0.44
PNKP-218ENST00000625299 LAP3P28838 519 aa12.3□□□□□ -0.44
PNKP-218ENST00000625299 AQP2P41181 271 aa12.3□□□□□ -0.44
PNKP-218ENST00000625299 RELBQ01201 579 aa12.3□□□□□ -0.44
PNKP-218ENST00000625299 DUSP7Q16829 419 aa12.3□□□□□ -0.44
PNKP-218ENST00000625299 PAGE3Q5JUK9 113 aa12.3□□□□□ -0.44
PNKP-218ENST00000625299 RHOUQ7L0Q8 258 aa12.3□□□□□ -0.44
PNKP-218ENST00000625299 POU5F2Q8N7G0 328 aa12.3□□□□□ -0.44
PNKP-218ENST00000625299 GPR32P1Q8NGA4 272 aa12.3□□□□□ -0.44
PNKP-218ENST00000625299 HDAC2Q92769 488 aaKnown RBP12.3□□□□□ -0.44
PNKP-218ENST00000625299 OR2V2Q96R30 315 aa12.3□□□□□ -0.44
PNKP-218ENST00000625299 SEPHS2Q99611 448 aa12.3□□□□□ -0.44
PNKP-218ENST00000625299 CHIAQ9BZP6 476 aa12.3□□□□□ -0.44
PNKP-218ENST00000625299 POFUT1Q9H488 388 aa12.3□□□□□ -0.44
PNKP-218ENST00000625299 CLPSL1A2RUU4 121 aa12.29□□□□□ -0.44
PNKP-218ENST00000625299 EVPLLA8MZ36 301 aa12.29□□□□□ -0.44
PNKP-218ENST00000625299 CENPBD1B2RD01 187 aa12.29□□□□□ -0.44
PNKP-218ENST00000625299 TMEM178BH3BS89 294 aa12.29□□□□□ -0.44
PNKP-218ENST00000625299 WNT2P09544 360 aa12.29□□□□□ -0.44
PNKP-218ENST00000625299 PPIAL4GP0DN37 164 aa12.29□□□□□ -0.44
PNKP-218ENST00000625299 MMP16P51512 607 aa12.29□□□□□ -0.44
PNKP-218ENST00000625299 ZNF133P52736 654 aaPredicted RBP12.29□□□□□ -0.44
PNKP-218ENST00000625299 KRTAP10-3P60369 221 aa12.29□□□□□ -0.44
PNKP-218ENST00000625299 TOP3AQ13472 1001 aaPredicted RBP12.29□□□□□ -0.44
PNKP-218ENST00000625299 RUNDC3AQ59EK9 446 aa12.29□□□□□ -0.44
PNKP-218ENST00000625299 ARL9Q6T311 187 aa12.29□□□□□ -0.44
PNKP-218ENST00000625299 Q6ZR03 302 aa12.29□□□□□ -0.44
PNKP-218ENST00000625299 TSPYL5Q86VY4 417 aaPredicted RBP12.29□□□□□ -0.44
PNKP-218ENST00000625299 KLBQ86Z14 1044 aa12.29□□□□□ -0.44
PNKP-218ENST00000625299 OR4D11Q8NGI4 311 aa12.29□□□□□ -0.44
PNKP-218ENST00000625299 PFN4Q8NHR9 129 aa12.29□□□□□ -0.44
PNKP-218ENST00000625299 ZNF420Q8TAQ5 688 aaPredicted RBP12.29□□□□□ -0.44
PNKP-218ENST00000625299 RAB40AQ8WXH6 277 aa12.29□□□□□ -0.44
PNKP-218ENST00000625299 MEPEQ9NQ76 525 aaPredicted RBP12.29□□□□□ -0.44
PNKP-218ENST00000625299 MAN2C1Q9NTJ4 1040 aa12.29□□□□□ -0.44
PNKP-218ENST00000625299 CORO2BQ9UQ03 480 aa12.29□□□□□ -0.44
PNKP-218ENST00000625299 ZNF281Q9Y2X9 895 aa12.29□□□□□ -0.44
PNKP-218ENST00000625299 A0A1W2PPL8 197 aa12.28□□□□□ -0.44
PNKP-218ENST00000625299 SURF4O15260 269 aa12.28□□□□□ -0.44
PNKP-218ENST00000625299 CYB5R3P00387 301 aaPredicted RBP12.28□□□□□ -0.44
PNKP-218ENST00000625299 FUT1P19526 365 aa12.28□□□□□ -0.44
PNKP-218ENST00000625299 CD247P20963 164 aa12.28□□□□□ -0.44
PNKP-218ENST00000625299 WDR4P57081 412 aaKnown RBP12.28□□□□□ -0.44
PNKP-218ENST00000625299 PAX2Q02962 417 aa12.28□□□□□ -0.44
PNKP-218ENST00000625299 CYP51A1Q16850 503 aa12.28□□□□□ -0.44
PNKP-218ENST00000625299 ARMC4Q5T2S8 1044 aa12.28□□□□□ -0.44
PNKP-218ENST00000625299 GPR157Q5UAW9 335 aa12.28□□□□□ -0.44
PNKP-218ENST00000625299 FAM27BQ5VT28 67 aa12.28□□□□□ -0.44
PNKP-218ENST00000625299 RUSC1-AS1Q66K80 236 aa12.28□□□□□ -0.44
PNKP-218ENST00000625299 ASPHD2Q6ICH7 369 aa12.28□□□□□ -0.44
PNKP-218ENST00000625299 CLDN22Q8N7P3 220 aa12.28□□□□□ -0.44
PNKP-218ENST00000625299 ATG16L2Q8NAA4 619 aa12.28□□□□□ -0.44
PNKP-218ENST00000625299 NPEPL1Q8NDH3 523 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms