RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 MSR1P21757 451 aa11.65□□□□□ -0.54
LINC00540-202ENST00000616974 KDM4DQ6B0I6 523 aa11.65□□□□□ -0.54
LINC00540-202ENST00000616974 LRP11Q86VZ4 500 aa11.65□□□□□ -0.54
LINC00540-202ENST00000616974 POP5Q969H6 163 aaKnown RBP11.65□□□□□ -0.54
LINC00540-202ENST00000616974 CENPNQ96H22 339 aaPredicted RBP11.65□□□□□ -0.54
LINC00540-202ENST00000616974 CCL19Q99731 98 aa11.65□□□□□ -0.54
LINC00540-202ENST00000616974 SLC29A1Q99808 456 aa11.65□□□□□ -0.54
LINC00540-202ENST00000616974 OR2H1Q9GZK4 316 aa11.65□□□□□ -0.54
LINC00540-202ENST00000616974 KIF17Q9P2E2 1029 aa11.65□□□□□ -0.54
LINC00540-202ENST00000616974 MYEF2Q9P2K5 600 aaKnown RBP11.65□□□□□ -0.54
LINC00540-202ENST00000616974 CR1P17927 2039 aa11.65□□□□□ -0.54
LINC00540-202ENST00000616974 MXRA5Q9NR99 2828 aa11.65□□□□□ -0.54
LINC00540-202ENST00000616974 RAB36O95755 333 aa11.65□□□□□ -0.55
LINC00540-202ENST00000616974 RAF1P04049 648 aa11.65□□□□□ -0.55
LINC00540-202ENST00000616974 GSTM3P21266 225 aa11.65□□□□□ -0.55
LINC00540-202ENST00000616974 CCNOP22674 350 aa11.65□□□□□ -0.55
LINC00540-202ENST00000616974 ARR3P36575 388 aa11.65□□□□□ -0.55
LINC00540-202ENST00000616974 WNT5AP41221 380 aa11.65□□□□□ -0.55
LINC00540-202ENST00000616974 PPP2R2BQ00005 443 aa11.65□□□□□ -0.55
LINC00540-202ENST00000616974 CDK5Q00535 292 aa11.65□□□□□ -0.55
LINC00540-202ENST00000616974 MST1LQ2TV78 715 aa11.65□□□□□ -0.55
LINC00540-202ENST00000616974 ZBTB46Q86UZ6 589 aa11.65□□□□□ -0.55
LINC00540-202ENST00000616974 ZNF611Q8N823 705 aa11.65□□□□□ -0.55
LINC00540-202ENST00000616974 SLC26A10Q8NG04 563 aa11.65□□□□□ -0.55
LINC00540-202ENST00000616974 TEX47Q8TBZ9 253 aa11.65□□□□□ -0.55
LINC00540-202ENST00000616974 OTULINQ96BN8 352 aa11.65□□□□□ -0.55
LINC00540-202ENST00000616974 PERPQ96FX8 193 aa11.65□□□□□ -0.55
LINC00540-202ENST00000616974 BDH2Q9BUT1 245 aa11.65□□□□□ -0.55
LINC00540-202ENST00000616974 NMNAT2Q9BZQ4 307 aa11.65□□□□□ -0.55
LINC00540-202ENST00000616974 HINT3Q9NQE9 182 aaKnown RBP11.65□□□□□ -0.55
LINC00540-202ENST00000616974 PAPOLBQ9NRJ5 636 aaKnown RBP11.65□□□□□ -0.55
LINC00540-202ENST00000616974 CA10Q9NS85 328 aa11.65□□□□□ -0.55
LINC00540-202ENST00000616974 GDF2Q9UK05 429 aaPredicted RBP11.65□□□□□ -0.55
LINC00540-202ENST00000616974 EI24O14681 340 aa11.64□□□□□ -0.55
LINC00540-202ENST00000616974 UBL3O95164 117 aa11.64□□□□□ -0.55
LINC00540-202ENST00000616974 FARS2O95363 451 aaKnown RBP11.64□□□□□ -0.55
LINC00540-202ENST00000616974 SERPINA5P05154 406 aa11.64□□□□□ -0.55
LINC00540-202ENST00000616974 ANXA8P13928 327 aa11.64□□□□□ -0.55
LINC00540-202ENST00000616974 THBS4P35443 961 aa11.64□□□□□ -0.55
LINC00540-202ENST00000616974 PRSS12P56730 875 aa11.64□□□□□ -0.55
LINC00540-202ENST00000616974 NKX6-1P78426 367 aaPredicted RBP11.64□□□□□ -0.55
LINC00540-202ENST00000616974 GABPB1Q06547 395 aaPredicted RBP11.64□□□□□ -0.55
LINC00540-202ENST00000616974 PTGES3Q15185 160 aaKnown RBP11.64□□□□□ -0.55
LINC00540-202ENST00000616974 ADIPOQQ15848 244 aa11.64□□□□□ -0.55
LINC00540-202ENST00000616974 CFAP77Q6ZQR2 320 aa11.64□□□□□ -0.55
LINC00540-202ENST00000616974 SLC30A7Q8NEW0 376 aa11.64□□□□□ -0.55
LINC00540-202ENST00000616974 UBE2FQ969M7 185 aa11.64□□□□□ -0.55
LINC00540-202ENST00000616974 STX18Q9P2W9 335 aaKnown RBP11.64□□□□□ -0.55
LINC00540-202ENST00000616974 AASSQ9UDR5 926 aa11.64□□□□□ -0.55
LINC00540-202ENST00000616974 YLPM1P49750 1951 aaKnown RBP11.64□□□□□ -0.55
LINC00540-202ENST00000616974 SURF4O15260 269 aa11.63□□□□□ -0.55
LINC00540-202ENST00000616974 KHDRBS3O75525 346 aaKnown RBP11.63□□□□□ -0.55
LINC00540-202ENST00000616974 NGFP01138 241 aa11.63□□□□□ -0.55
LINC00540-202ENST00000616974 CRYAAP02489 173 aa11.63□□□□□ -0.55
LINC00540-202ENST00000616974 HOXB1P14653 301 aaPredicted RBP11.63□□□□□ -0.55
LINC00540-202ENST00000616974 SPI1P17947 270 aa11.63□□□□□ -0.55
LINC00540-202ENST00000616974 TTKP33981 857 aa11.63□□□□□ -0.55
LINC00540-202ENST00000616974 GGT2P36268 569 aa11.63□□□□□ -0.55
LINC00540-202ENST00000616974 ART1P52961 327 aa11.63□□□□□ -0.55
LINC00540-202ENST00000616974 CRISP1P54107 249 aa11.63□□□□□ -0.55
LINC00540-202ENST00000616974 COX10Q12887 443 aa11.63□□□□□ -0.55
LINC00540-202ENST00000616974 SNTB2Q13425 540 aaKnown RBP11.63□□□□□ -0.55
LINC00540-202ENST00000616974 CCDC92Q53HC0 331 aaPredicted RBP11.63□□□□□ -0.55
LINC00540-202ENST00000616974 SPATA46Q5T0L3 261 aa11.63□□□□□ -0.55
LINC00540-202ENST00000616974 LINC01590Q5TEZ4 76 aa11.63□□□□□ -0.55
LINC00540-202ENST00000616974 SLC27A4Q6P1M0 643 aa11.63□□□□□ -0.55
LINC00540-202ENST00000616974 PLBD1Q6P4A8 553 aa11.63□□□□□ -0.55
LINC00540-202ENST00000616974 TMEM154Q6P9G4 183 aa11.63□□□□□ -0.55
LINC00540-202ENST00000616974 ZDHHC13Q8IUH4 622 aa11.63□□□□□ -0.55
LINC00540-202ENST00000616974 GLB1L2Q8IW92 636 aa11.63□□□□□ -0.55
LINC00540-202ENST00000616974 WFDC11Q8NEX6 87 aa11.63□□□□□ -0.55
LINC00540-202ENST00000616974 OR10S1Q8NGN2 331 aa11.63□□□□□ -0.55
LINC00540-202ENST00000616974 NRBF2Q96F24 287 aa11.63□□□□□ -0.55
LINC00540-202ENST00000616974 GABARAPL1Q9H0R8 117 aa11.63□□□□□ -0.55
LINC00540-202ENST00000616974 POFUT1Q9H488 388 aa11.63□□□□□ -0.55
LINC00540-202ENST00000616974 CMC2Q9NRP2 79 aa11.63□□□□□ -0.55
LINC00540-202ENST00000616974 KRT84Q9NSB2 600 aa11.63□□□□□ -0.55
LINC00540-202ENST00000616974 ANK3Q12955 4377 aaKnown RBP11.63□□□□□ -0.55
LINC00540-202ENST00000616974 C5orf49A4QMS7 147 aa11.63□□□□□ -0.55
LINC00540-202ENST00000616974 C5orf63A6NC05 138 aa11.63□□□□□ -0.55
LINC00540-202ENST00000616974 PRKYO43930 277 aa11.63□□□□□ -0.55
LINC00540-202ENST00000616974 RENP00797 406 aa11.63□□□□□ -0.55
LINC00540-202ENST00000616974 CST2P09228 141 aa11.63□□□□□ -0.55
LINC00540-202ENST00000616974 NPR2P20594 1047 aa11.63□□□□□ -0.55
LINC00540-202ENST00000616974 TESK1Q15569 626 aa11.63□□□□□ -0.55
LINC00540-202ENST00000616974 RSPO1Q2MKA7 263 aaPredicted RBP11.63□□□□□ -0.55
LINC00540-202ENST00000616974 ZIK1Q3SY52 487 aaPredicted RBP11.63□□□□□ -0.55
LINC00540-202ENST00000616974 SLC36A2Q495M3 483 aa11.63□□□□□ -0.55
LINC00540-202ENST00000616974 C11orf71Q6IPW1 123 aa11.63□□□□□ -0.55
LINC00540-202ENST00000616974 RPL13AP3Q6NVV1 102 aa11.63□□□□□ -0.55
LINC00540-202ENST00000616974 PROKR2Q8NFJ6 384 aa11.63□□□□□ -0.55
LINC00540-202ENST00000616974 TMEM171Q8WVE6 324 aa11.63□□□□□ -0.55
LINC00540-202ENST00000616974 POM121L2Q96KW2 1035 aa11.63□□□□□ -0.55
LINC00540-202ENST00000616974 OSBPL10Q9BXB5 764 aa11.63□□□□□ -0.55
LINC00540-202ENST00000616974 RACGAP1Q9H0H5 632 aa11.63□□□□□ -0.55
LINC00540-202ENST00000616974 TVP23BQ9NYZ1 205 aa11.63□□□□□ -0.55
LINC00540-202ENST00000616974 TMEM129A0AVI4 362 aa11.62□□□□□ -0.55
LINC00540-202ENST00000616974 IDH3BO43837 385 aa11.62□□□□□ -0.55
LINC00540-202ENST00000616974 STOMP27105 288 aa11.62□□□□□ -0.55
LINC00540-202ENST00000616974 FABP6P51161 128 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms