RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 LINC01553A4QN01 128 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 MFSD2BA6NFX1 497 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 IGKV1D-16P01601 117 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 CNR1P21554 472 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 ZNF74Q16587 644 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 C1QL3Q5VWW1 255 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 TMEM71Q6P5X7 295 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 OR13H1Q8NG92 308 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 OR1S2Q8NGQ3 325 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 WNT2BQ93097 391 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 JAM3Q9BX67 310 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 GAREM1Q9H706 876 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 POLMQ9NP87 494 aaPredicted RBP11.41□□□□□ -0.58
LIG1-221ENST00000613670 PIPOXQ9P0Z9 390 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 B9D1Q9UPM9 204 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 ADAM11O75078 769 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 ALOX12BO75342 701 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 B3GALNT1O75752 331 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 ZNF14P17017 642 aaPredicted RBP11.41□□□□□ -0.58
LIG1-221ENST00000613670 RBMXP38159 391 aaKnown RBP11.41□□□□□ -0.58
LIG1-221ENST00000613670 EIF5AP63241 154 aaKnown RBP11.41□□□□□ -0.58
LIG1-221ENST00000613670 CCINQ13939 588 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 ZNF660Q6AZW8 331 aaPredicted RBP11.41□□□□□ -0.58
LIG1-221ENST00000613670 ATRAIDQ6UW56 229 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 ACOT7LQ6ZUV0 252 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 ADGRE4PQ86SQ3 457 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 FJX1Q86VR8 437 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 ZNF283Q8N7M2 679 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 LDHAL6BQ9BYZ2 381 aaPredicted RBP11.41□□□□□ -0.58
LIG1-221ENST00000613670 NXF5Q9H1B4 397 aaKnown RBP11.41□□□□□ -0.58
LIG1-221ENST00000613670 FAM60AQ9NP50 221 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 GDE1Q9NZC3 331 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 SERTAD3Q9UJW9 196 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 CSAG2Q9Y5P2 127 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 TRPM7Q96QT4 1865 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 HMSDA8MTL9 139 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 SLC17A2O00624 439 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 CRTAPO75718 401 aaPredicted RBP11.41□□□□□ -0.58
LIG1-221ENST00000613670 POU3F1Q03052 451 aaPredicted RBP11.41□□□□□ -0.58
LIG1-221ENST00000613670 ETFDHQ16134 617 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 DCXRQ7Z4W1 244 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 CMIPQ8IY22 773 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 OR4K17Q8NGC6 315 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 HAVCR2Q8TDQ0 301 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 HHIPL1Q96JK4 782 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 C4orf45Q96LM5 186 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 CMTM3Q96MX0 182 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 C12orf57Q99622 126 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 RPP25Q9BUL9 199 aaKnown RBP11.41□□□□□ -0.58
LIG1-221ENST00000613670 PIGMQ9H3S5 423 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 PDE7BQ9NP56 450 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 NPDC1Q9NQX5 325 aaPredicted RBP11.41□□□□□ -0.58
LIG1-221ENST00000613670 DHCR7Q9UBM7 475 aaKnown RBP11.41□□□□□ -0.58
LIG1-221ENST00000613670 MEMO1Q9Y316 297 aa11.41□□□□□ -0.58
LIG1-221ENST00000613670 LOC107986453A0A1B0GWG9 222 aa11.4□□□□□ -0.58
LIG1-221ENST00000613670 EFEMP2O95967 443 aa11.4□□□□□ -0.58
LIG1-221ENST00000613670 SERPINA5P05154 406 aa11.4□□□□□ -0.58
LIG1-221ENST00000613670 BLKP51451 505 aa11.4□□□□□ -0.58
LIG1-221ENST00000613670 RPS11P62280 158 aaKnown RBP eCLIP11.4□□□□□ -0.58
LIG1-221ENST00000613670 SLC17A1Q14916 467 aa11.4□□□□□ -0.58
LIG1-221ENST00000613670 ELOCQ15369 112 aa11.4□□□□□ -0.58
LIG1-221ENST00000613670 TMEM196Q5HYL7 178 aa11.4□□□□□ -0.58
LIG1-221ENST00000613670 PARM1Q6UWI2 310 aa11.4□□□□□ -0.58
LIG1-221ENST00000613670 NAXDQ8IW45 347 aa11.4□□□□□ -0.58
LIG1-221ENST00000613670 SLC43A2Q8N370 569 aa11.4□□□□□ -0.58
LIG1-221ENST00000613670 OR5H2Q8NGV7 314 aa11.4□□□□□ -0.58
LIG1-221ENST00000613670 OR4K15Q8NH41 348 aa11.4□□□□□ -0.58
LIG1-221ENST00000613670 KLHDC7BQ96G42 594 aa11.4□□□□□ -0.58
LIG1-221ENST00000613670 NECAB3Q96P71 396 aaPredicted RBP11.4□□□□□ -0.58
LIG1-221ENST00000613670 EIF5A2Q9GZV4 153 aaKnown RBP11.4□□□□□ -0.58
LIG1-221ENST00000613670 LDAHQ9H6V9 325 aa11.4□□□□□ -0.58
LIG1-221ENST00000613670 MMP25Q9NPA2 562 aa11.4□□□□□ -0.58
LIG1-221ENST00000613670 RPS10P5Q9NQ39 176 aa11.4□□□□□ -0.58
LIG1-221ENST00000613670 KCNMB2Q9Y691 235 aa11.4□□□□□ -0.58
LIG1-221ENST00000613670 SCN5AQ14524 2016 aa11.4□□□□□ -0.58
LIG1-221ENST00000613670 OR4C45A6NMZ5 311 aa11.4□□□□□ -0.58
LIG1-221ENST00000613670 J3QRE1 110 aa11.4□□□□□ -0.58
LIG1-221ENST00000613670 SEMA4FO95754 770 aa11.4□□□□□ -0.58
LIG1-221ENST00000613670 WDPCPO95876 746 aa11.4□□□□□ -0.58
LIG1-221ENST00000613670 SERPINF1P36955 418 aa11.4□□□□□ -0.58
LIG1-221ENST00000613670 CSNK2A1P68400 391 aaPredicted RBP11.4□□□□□ -0.58
LIG1-221ENST00000613670 EBPQ15125 230 aaKnown RBP11.4□□□□□ -0.58
LIG1-221ENST00000613670 ZNF704Q6ZNC4 412 aaPredicted RBP11.4□□□□□ -0.58
LIG1-221ENST00000613670 HSD17B13Q7Z5P4 300 aaPredicted RBP11.4□□□□□ -0.58
LIG1-221ENST00000613670 GVQW1Q8N7I0 195 aa11.4□□□□□ -0.58
LIG1-221ENST00000613670 CSNK2A3Q8NEV1 391 aa11.4□□□□□ -0.58
LIG1-221ENST00000613670 RLN3Q8WXF3 142 aa11.4□□□□□ -0.58
LIG1-221ENST00000613670 BIN3Q9NQY0 253 aa11.4□□□□□ -0.58
LIG1-221ENST00000613670 ZNF629Q9UEG4 869 aaPredicted RBP11.4□□□□□ -0.58
LIG1-221ENST00000613670 LSM5Q9Y4Y9 91 aaKnown RBP11.4□□□□□ -0.58
LIG1-221ENST00000613670 TMEM272A0A1B0GTI8 110 aa11.4□□□□□ -0.59
LIG1-221ENST00000613670 HCRTR1O43613 425 aa11.4□□□□□ -0.59
LIG1-221ENST00000613670 MED6O75586 246 aa11.4□□□□□ -0.59
LIG1-221ENST00000613670 OR2F2O95006 317 aa11.4□□□□□ -0.59
LIG1-221ENST00000613670 WNT11O96014 354 aa11.4□□□□□ -0.59
LIG1-221ENST00000613670 VEGFBP49765 207 aa11.4□□□□□ -0.59
LIG1-221ENST00000613670 CLDN6P56747 220 aa11.4□□□□□ -0.59
LIG1-221ENST00000613670 RAB5BP61020 215 aa11.4□□□□□ -0.59
LIG1-221ENST00000613670 TLE3Q04726 772 aa11.4□□□□□ -0.59
LIG1-221ENST00000613670 BAMBIQ13145 260 aa11.4□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms