RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 UQCRFS1P47985 274 aa2.38□□□□□ -2.03
SMCHD1-209ENST00000583441 CSNK1EP49674 416 aaKnown RBP2.38□□□□□ -2.03
SMCHD1-209ENST00000583441 ARG2P78540 354 aa2.38□□□□□ -2.03
SMCHD1-209ENST00000583441 MXD1Q05195 221 aa2.38□□□□□ -2.03
SMCHD1-209ENST00000583441 ERCC8Q13216 396 aa2.38□□□□□ -2.03
SMCHD1-209ENST00000583441 SELENBP1Q13228 472 aa2.38□□□□□ -2.03
SMCHD1-209ENST00000583441 MRPL23Q16540 153 aaKnown RBP2.38□□□□□ -2.03
SMCHD1-209ENST00000583441 POU2AF1Q16633 256 aa2.38□□□□□ -2.03
SMCHD1-209ENST00000583441 ALKBH6Q3KRA9 238 aa2.38□□□□□ -2.03
SMCHD1-209ENST00000583441 UBE2UQ5VVX9 321 aa2.38□□□□□ -2.03
SMCHD1-209ENST00000583441 SPESP1Q6UW49 350 aa2.38□□□□□ -2.03
SMCHD1-209ENST00000583441 TIFABQ6ZNK6 161 aa2.38□□□□□ -2.03
SMCHD1-209ENST00000583441 C12orf56Q8IXR9 622 aa2.38□□□□□ -2.03
SMCHD1-209ENST00000583441 PRELID2Q8N945 189 aa2.38□□□□□ -2.03
SMCHD1-209ENST00000583441 TTC29Q8NA56 475 aaPredicted RBP2.38□□□□□ -2.03
SMCHD1-209ENST00000583441 NOXO1Q8NFA2 376 aa2.38□□□□□ -2.03
SMCHD1-209ENST00000583441 OR5B3Q8NH48 314 aa2.38□□□□□ -2.03
SMCHD1-209ENST00000583441 CAPSLQ8WWF8 208 aa2.38□□□□□ -2.03
SMCHD1-209ENST00000583441 NRGNQ92686 78 aa2.38□□□□□ -2.03
SMCHD1-209ENST00000583441 NTAN1Q96AB6 310 aa2.38□□□□□ -2.03
SMCHD1-209ENST00000583441 GALNT14Q96FL9 552 aa2.38□□□□□ -2.03
SMCHD1-209ENST00000583441 BMFQ96LC9 184 aa2.38□□□□□ -2.03
SMCHD1-209ENST00000583441 LINC00167Q96N53 147 aa2.38□□□□□ -2.03
SMCHD1-209ENST00000583441 FOPNLQ96NB1 174 aa2.38□□□□□ -2.03
SMCHD1-209ENST00000583441 OR5B12Q96R08 314 aa2.38□□□□□ -2.03
SMCHD1-209ENST00000583441 SLC25A2Q9BXI2 301 aa2.38□□□□□ -2.03
SMCHD1-209ENST00000583441 LCE3DQ9BYE3 92 aa2.38□□□□□ -2.03
SMCHD1-209ENST00000583441 TPK1Q9H3S4 243 aa2.38□□□□□ -2.03
SMCHD1-209ENST00000583441 RPP21Q9H633 154 aaKnown RBP2.38□□□□□ -2.03
SMCHD1-209ENST00000583441 NOX3Q9HBY0 568 aa2.38□□□□□ -2.03
SMCHD1-209ENST00000583441 UVRAGQ9P2Y5 699 aa2.38□□□□□ -2.03
SMCHD1-209ENST00000583441 CLN8Q9UBY8 286 aa2.38□□□□□ -2.03
SMCHD1-209ENST00000583441 WDR62O43379 1518 aa2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 LTBP1Q14766 1721 aa2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 TDRD6O60522 2096 aaKnown RBP2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 SPECC1L-ADORA2AF8WAN1 911 aa2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 H0YHG0 523 aa2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 H0YIV9 168 aa2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 ANGPTL7O43827 346 aa2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 HLA-DPB1P04440 258 aa2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 SERPINE2P07093 398 aa2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 FGF4P08620 206 aa2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 BCKDHBP21953 392 aa2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 MAS1LP35410 378 aa2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 EIF3EP60228 445 aaKnown RBP2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 SP4Q02446 784 aa2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 GBE1Q04446 702 aa2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 TRAM2Q15035 370 aa2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 PSMD5Q16401 504 aa2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 BEX5Q5H9J7 111 aa2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 SPECC1LQ69YQ0 1117 aa2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 TMEM53Q6P2H8 277 aa2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 Q6P435 159 aa2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 FAM92BQ6ZTR7 304 aa2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 MMAAQ8IVH4 418 aaKnown RBP2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 PRSS58Q8IYP2 241 aa2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 SAXO1Q8IYX7 474 aa2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 CMTM1Q8IZ96 169 aa2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 JAGN1Q8N5M9 183 aa2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 OR10J6PQ8NGY7 276 aa2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 OR5K2Q8NHB8 316 aa2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 LYPD6BQ8NI32 183 aa2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 ZNF596Q8TC21 504 aa2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 ZFP90Q8TF47 636 aa2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 STARD8Q92502 1023 aa2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 TMEM230Q96A57 120 aa2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 DUS3LQ96G46 650 aaKnown RBP2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 CEP170P1Q96L14 293 aa2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 MICU1Q9BPX6 476 aa2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 ANP32EQ9BTT0 268 aa2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 IQCGQ9H095 443 aaKnown RBP2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 SLC40A1Q9NP59 571 aa2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 MRPS30Q9NP92 439 aaKnown RBP2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 MYOZ2Q9NPC6 264 aa2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 ZNF223Q9UK11 482 aaPredicted RBP2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 KLK12Q9UKR0 248 aa2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 TBX21Q9UL17 535 aa2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 SLC17A4Q9Y2C5 497 aa2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 MRPS18BQ9Y676 258 aaKnown RBP2.37□□□□□ -2.03
SMCHD1-209ENST00000583441 COL16A1Q07092 1604 aaPredicted RBP2.36□□□□□ -2.03
SMCHD1-209ENST00000583441 IGHV5-51A0A0C4DH38 117 aa2.36□□□□□ -2.03
SMCHD1-209ENST00000583441 SERTM2A0A1B0GWG4 89 aa2.36□□□□□ -2.03
SMCHD1-209ENST00000583441 LRRIQ4A6NIV6 560 aa2.36□□□□□ -2.03
SMCHD1-209ENST00000583441 CASC3O15234 703 aaKnown RBP2.36□□□□□ -2.03
SMCHD1-209ENST00000583441 EIF3HO15372 352 aaKnown RBP eCLIP2.36□□□□□ -2.03
SMCHD1-209ENST00000583441 NUPL2O15504 423 aaKnown RBP2.36□□□□□ -2.03
SMCHD1-209ENST00000583441 RAD51CO43502 376 aa2.36□□□□□ -2.03
SMCHD1-209ENST00000583441 CLDN11O75508 207 aa2.36□□□□□ -2.03
SMCHD1-209ENST00000583441 AQP8O94778 261 aa2.36□□□□□ -2.03
SMCHD1-209ENST00000583441 GABARAPO95166 117 aa2.36□□□□□ -2.03
SMCHD1-209ENST00000583441 GNAO1P09471 354 aa2.36□□□□□ -2.03
SMCHD1-209ENST00000583441 CEACAM6P40199 344 aa2.36□□□□□ -2.03
SMCHD1-209ENST00000583441 TNFSF9P41273 254 aa2.36□□□□□ -2.03
SMCHD1-209ENST00000583441 CDKN2BP42772 138 aa2.36□□□□□ -2.03
SMCHD1-209ENST00000583441 MAGEA1P43355 309 aa2.36□□□□□ -2.03
SMCHD1-209ENST00000583441 VSX2P58304 361 aaPredicted RBP2.36□□□□□ -2.03
SMCHD1-209ENST00000583441 LRRC63Q05C16 580 aa2.36□□□□□ -2.03
SMCHD1-209ENST00000583441 IFT88Q13099 833 aa2.36□□□□□ -2.03
SMCHD1-209ENST00000583441 MAB21L1Q13394 359 aa2.36□□□□□ -2.03
SMCHD1-209ENST00000583441 C16orf72Q14CZ0 275 aa2.36□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms