RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 DNAJA4Q8WW22 397 aaPredicted RBP3.35□□□□□ -1.87
SMCHD1-208ENST00000583344 ASZ1Q8WWH4 475 aa3.35□□□□□ -1.87
SMCHD1-208ENST00000583344 DEDD2Q8WXF8 326 aa3.35□□□□□ -1.87
SMCHD1-208ENST00000583344 ECHDC3Q96DC8 303 aa3.35□□□□□ -1.87
SMCHD1-208ENST00000583344 SAMD8Q96LT4 415 aa3.35□□□□□ -1.87
SMCHD1-208ENST00000583344 HYLS1Q96M11 299 aa3.35□□□□□ -1.87
SMCHD1-208ENST00000583344 OR6C1Q96RD1 312 aa3.35□□□□□ -1.87
SMCHD1-208ENST00000583344 COPS8Q99627 209 aa3.35□□□□□ -1.87
SMCHD1-208ENST00000583344 DHRS9Q9BPW9 319 aa3.35□□□□□ -1.87
SMCHD1-208ENST00000583344 TMEM175Q9BSA9 504 aa3.35□□□□□ -1.87
SMCHD1-208ENST00000583344 POLR2J2Q9GZM3 115 aaKnown RBP3.35□□□□□ -1.87
SMCHD1-208ENST00000583344 ROGDIQ9GZN7 287 aa3.35□□□□□ -1.87
SMCHD1-208ENST00000583344 NT5DC2Q9H857 520 aa3.35□□□□□ -1.87
SMCHD1-208ENST00000583344 NMNAT1Q9HAN9 279 aaPredicted RBP3.35□□□□□ -1.87
SMCHD1-208ENST00000583344 GPN1Q9HCN4 374 aaPredicted RBP3.35□□□□□ -1.87
SMCHD1-208ENST00000583344 MYNNQ9NPC7 610 aa3.35□□□□□ -1.87
SMCHD1-208ENST00000583344 TIGARQ9NQ88 270 aa3.35□□□□□ -1.87
SMCHD1-208ENST00000583344 RPRD1BQ9NQG5 326 aaKnown RBP3.35□□□□□ -1.87
SMCHD1-208ENST00000583344 GKN1Q9NS71 199 aa3.35□□□□□ -1.87
SMCHD1-208ENST00000583344 ZNF275Q9NSD4 429 aaPredicted RBP3.35□□□□□ -1.87
SMCHD1-208ENST00000583344 DDX28Q9NUL7 540 aaKnown RBP3.35□□□□□ -1.87
SMCHD1-208ENST00000583344 RBFOX1Q9NWB1 397 aaKnown RBP3.35□□□□□ -1.87
SMCHD1-208ENST00000583344 TXNL4BQ9NX01 149 aaKnown RBP3.35□□□□□ -1.87
SMCHD1-208ENST00000583344 PAQR5Q9NXK6 330 aaPredicted RBP3.35□□□□□ -1.87
SMCHD1-208ENST00000583344 SLCO1C1Q9NYB5 712 aa3.35□□□□□ -1.87
SMCHD1-208ENST00000583344 STMN3Q9NZ72 180 aa3.35□□□□□ -1.87
SMCHD1-208ENST00000583344 PTTG3PQ9NZH4 202 aa3.35□□□□□ -1.87
SMCHD1-208ENST00000583344 RABL2AQ9UBK7 228 aaPredicted RBP3.35□□□□□ -1.87
SMCHD1-208ENST00000583344 KCNN3Q9UGI6 736 aa3.35□□□□□ -1.87
SMCHD1-208ENST00000583344 NUFIP1Q9UHK0 495 aaKnown RBP3.35□□□□□ -1.87
SMCHD1-208ENST00000583344 CRLS1Q9UJA2 301 aa3.35□□□□□ -1.87
SMCHD1-208ENST00000583344 RAB23Q9ULC3 237 aa3.35□□□□□ -1.87
SMCHD1-208ENST00000583344 SATB2Q9UPW6 733 aa3.35□□□□□ -1.87
SMCHD1-208ENST00000583344 KCNK6Q9Y257 313 aa3.35□□□□□ -1.87
SMCHD1-208ENST00000583344 GSTK1Q9Y2Q3 226 aa3.35□□□□□ -1.87
SMCHD1-208ENST00000583344 AUP1Q9Y679 476 aa3.35□□□□□ -1.87
SMCHD1-208ENST00000583344 PLXNA4Q9HCM2 1894 aa3.35□□□□□ -1.87
SMCHD1-208ENST00000583344 MYO16Q9Y6X6 1858 aa3.35□□□□□ -1.87
SMCHD1-208ENST00000583344 PDE4DIPQ5VU43 2346 aa3.35□□□□□ -1.87
SMCHD1-208ENST00000583344 A0A0G2JMP0 313 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 A0A1W2PQL4 384 aaPredicted RBP3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 MED19A0JLT2 244 aaPredicted RBP3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 SLC5A10A0PJK1 596 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 OR6C70A6NIJ9 312 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 A8MU10 97 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 E9PI62 339 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 FFAR1O14842 300 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 BET1O15155 118 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 RGS5O15539 181 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 TBL1XO60907 577 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 OR2B3O76000 313 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 NXPH2O95156 264 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 CDRT1O95170 752 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 APBB3O95704 486 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 POP4O95707 220 aaKnown RBP3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 RAB36O95755 333 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 PTBP3O95758 552 aaKnown RBP3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 PDGFBP01127 241 aaPredicted RBP3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 IFNW1P05000 195 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 OR2T7P0C7T2 308 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 HSMCR30P0CW71 290 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 UQCRC2P22695 453 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 SDC2P34741 201 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 CRATP43155 626 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 OR1E2P47887 323 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 RFX3P48380 749 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 SPINT3P49223 89 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 SMSP52788 366 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 LIM2P55344 173 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 RAG2P55895 527 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 MTCP1P56278 107 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 B3GALT5-AS1P59052 145 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 RRAS2P62070 204 aaPredicted RBP3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 POLR2LP62875 67 aaKnown RBP3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 HBA1P69905 142 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 DLK1P80370 383 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 SPIBQ01892 262 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 TWF1Q12792 350 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 RAB40BQ12829 278 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 BAMBIQ13145 260 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 SLAMF1Q13291 335 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 MAB21L1Q13394 359 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 C1DQ13901 141 aaKnown RBP3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 DMC1Q14565 340 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 QPRTQ15274 297 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 ANGPT1Q15389 498 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 TAB1Q15750 504 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 CCL14Q16627 93 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 NDUFA9Q16795 377 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 DDI2Q5TDH0 399 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 LCN1P1Q5VSP4 162 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 TPGS2Q68CL5 300 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 RAET1GQ6H3X3 334 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 LAMTOR1Q6IAA8 161 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 FAM109BQ6ICB4 259 aaPredicted RBP3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 SLC25A24Q6NUK1 477 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 REEP3Q6NUK4 255 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 MFSD12Q6NUT3 480 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 C1orf94Q6P1W5 598 aa3.34□□□□□ -1.87
SMCHD1-208ENST00000583344 MED27Q6P2C8 311 aa3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms