RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 METTL15A6NJ78 407 aa13.44□□□□□ -0.26
SS18-215ENST00000580642 SCG5P05408 212 aa13.44□□□□□ -0.26
SS18-215ENST00000580642 KRT8P05787 483 aa13.44□□□□□ -0.26
SS18-215ENST00000580642 CD1AP06126 327 aa13.44□□□□□ -0.26
SS18-215ENST00000580642 HIST1H3AP68431 136 aa13.44□□□□□ -0.26
SS18-215ENST00000580642 MED22Q15528 200 aa13.44□□□□□ -0.26
SS18-215ENST00000580642 SGCAQ16586 387 aa13.44□□□□□ -0.26
SS18-215ENST00000580642 TIGD6Q17RP2 521 aa13.44□□□□□ -0.26
SS18-215ENST00000580642 HIST2H3PS2Q5TEC6 136 aa13.44□□□□□ -0.26
SS18-215ENST00000580642 LYPD4Q6UWN0 246 aa13.44□□□□□ -0.26
SS18-215ENST00000580642 PLXDC2Q6UX71 529 aa13.44□□□□□ -0.26
SS18-215ENST00000580642 BEND4Q6ZU67 534 aa13.44□□□□□ -0.26
SS18-215ENST00000580642 HIST2H3AQ71DI3 136 aa13.44□□□□□ -0.26
SS18-215ENST00000580642 FAM220AQ7Z4H9 259 aa13.44□□□□□ -0.26
SS18-215ENST00000580642 ZNF679Q8IYX0 411 aa13.44□□□□□ -0.26
SS18-215ENST00000580642 UBE2J2Q8N2K1 259 aa13.44□□□□□ -0.26
SS18-215ENST00000580642 SLC22A24Q8N4F4 322 aa13.44□□□□□ -0.26
SS18-215ENST00000580642 OR13F1Q8NGS4 319 aa13.44□□□□□ -0.26
SS18-215ENST00000580642 ST7LQ8TDW4 575 aa13.44□□□□□ -0.26
SS18-215ENST00000580642 RNF133Q8WVZ7 376 aa13.44□□□□□ -0.26
SS18-215ENST00000580642 OR8B4Q96RC9 309 aa13.44□□□□□ -0.26
SS18-215ENST00000580642 USB1Q9BQ65 265 aaKnown RBP13.44□□□□□ -0.26
SS18-215ENST00000580642 ABHD6Q9BV23 337 aa13.44□□□□□ -0.26
SS18-215ENST00000580642 MROQ9BYG7 248 aa13.44□□□□□ -0.26
SS18-215ENST00000580642 FAM192AQ9GZU8 254 aa13.44□□□□□ -0.26
SS18-215ENST00000580642 PROCRQ9UNN8 238 aa13.44□□□□□ -0.26
SS18-215ENST00000580642 EIF4E1BA6NMX2 242 aaKnown RBP13.43□□□□□ -0.26
SS18-215ENST00000580642 TOXO94900 526 aa13.43□□□□□ -0.26
SS18-215ENST00000580642 INMTO95050 263 aa13.43□□□□□ -0.26
SS18-215ENST00000580642 MPZL1O95297 269 aa13.43□□□□□ -0.26
SS18-215ENST00000580642 CGAP01215 116 aa13.43□□□□□ -0.26
SS18-215ENST00000580642 LCKP06239 509 aa13.43□□□□□ -0.26
SS18-215ENST00000580642 CDAP32320 146 aa13.43□□□□□ -0.26
SS18-215ENST00000580642 CA7P43166 264 aa13.43□□□□□ -0.26
SS18-215ENST00000580642 TGM4P49221 684 aa13.43□□□□□ -0.26
SS18-215ENST00000580642 GBX2P52951 348 aaPredicted RBP13.43□□□□□ -0.26
SS18-215ENST00000580642 SCRN3Q0VDG4 424 aa13.43□□□□□ -0.26
SS18-215ENST00000580642 ECH1Q13011 328 aa13.43□□□□□ -0.26
SS18-215ENST00000580642 ATMQ13315 3056 aa13.43□□□□□ -0.26
SS18-215ENST00000580642 TPBGQ13641 420 aa13.43□□□□□ -0.26
SS18-215ENST00000580642 EIF2B1Q14232 305 aaKnown RBP13.43□□□□□ -0.26
SS18-215ENST00000580642 RAB39AQ14964 217 aa13.43□□□□□ -0.26
SS18-215ENST00000580642 ANKRD16Q6P6B7 361 aa13.43□□□□□ -0.26
SS18-215ENST00000580642 ZNF813Q6ZN06 617 aa13.43□□□□□ -0.26
SS18-215ENST00000580642 LINGO2Q7L985 606 aa13.43□□□□□ -0.26
SS18-215ENST00000580642 GCNT2Q8N0V5 402 aa13.43□□□□□ -0.26
SS18-215ENST00000580642 CNEP1R1Q8N9A8 125 aa13.43□□□□□ -0.26
SS18-215ENST00000580642 THEM6Q8WUY1 208 aa13.43□□□□□ -0.26
SS18-215ENST00000580642 STARD4Q96DR4 205 aa13.43□□□□□ -0.26
SS18-215ENST00000580642 BCL7BQ9BQE9 202 aa13.43□□□□□ -0.26
SS18-215ENST00000580642 C12orf49Q9H741 205 aa13.43□□□□□ -0.26
SS18-215ENST00000580642 MOV10Q9HCE1 1003 aaKnown RBP13.43□□□□□ -0.26
SS18-215ENST00000580642 TAS2R16Q9NYV7 291 aa13.43□□□□□ -0.26
SS18-215ENST00000580642 ATPIF1Q9UII2 106 aa13.43□□□□□ -0.26
SS18-215ENST00000580642 COPS3Q9UNS2 423 aa13.43□□□□□ -0.26
SS18-215ENST00000580642 POLR1DQ9Y2S0 133 aa13.43□□□□□ -0.26
SS18-215ENST00000580642 LHFPL6Q9Y693 200 aa13.43□□□□□ -0.26
SS18-215ENST00000580642 DSPP15924 2871 aaKnown RBP13.42□□□□□ -0.26
SS18-215ENST00000580642 ZZEF1O43149 2961 aa13.42□□□□□ -0.26
SS18-215ENST00000580642 A6NHS1 94 aa13.42□□□□□ -0.26
SS18-215ENST00000580642 ZNF701M0R085 212 aaPredicted RBP13.42□□□□□ -0.26
SS18-215ENST00000580642 MSTNO14793 375 aa13.42□□□□□ -0.26
SS18-215ENST00000580642 ZNHIT1O43257 154 aa13.42□□□□□ -0.26
SS18-215ENST00000580642 GPANK1O95872 356 aa13.42□□□□□ -0.26
SS18-215ENST00000580642 APOC1P02654 83 aa13.42□□□□□ -0.26
SS18-215ENST00000580642 COX5AP20674 150 aa13.42□□□□□ -0.26
SS18-215ENST00000580642 PSMB9P28065 219 aa13.42□□□□□ -0.26
SS18-215ENST00000580642 GP2P55259 537 aaKnown RBP13.42□□□□□ -0.26
SS18-215ENST00000580642 ARF1P84077 181 aaKnown RBP13.42□□□□□ -0.26
SS18-215ENST00000580642 FAPQ12884 760 aa13.42□□□□□ -0.26
SS18-215ENST00000580642 NFATC3Q12968 1075 aa13.42□□□□□ -0.26
SS18-215ENST00000580642 ENDOGQ14249 297 aaKnown RBP13.42□□□□□ -0.26
SS18-215ENST00000580642 SLC36A2Q495M3 483 aa13.42□□□□□ -0.26
SS18-215ENST00000580642 ARMCX4Q5H9R4 360 aa13.42□□□□□ -0.26
SS18-215ENST00000580642 OR7E24Q6IFN5 339 aa13.42□□□□□ -0.26
SS18-215ENST00000580642 ZNF544Q6NX49 715 aa13.42□□□□□ -0.26
SS18-215ENST00000580642 FDX2Q6P4F2 183 aa13.42□□□□□ -0.26
SS18-215ENST00000580642 VASH1Q7L8A9 365 aaPredicted RBP13.42□□□□□ -0.26
SS18-215ENST00000580642 DCXRQ7Z4W1 244 aa13.42□□□□□ -0.26
SS18-215ENST00000580642 GABRG1Q8N1C3 465 aa13.42□□□□□ -0.26
SS18-215ENST00000580642 C17orf78Q8N4C9 275 aa13.42□□□□□ -0.26
SS18-215ENST00000580642 SPRYD4Q8WW59 207 aaPredicted RBP13.42□□□□□ -0.26
SS18-215ENST00000580642 ZNF837Q96EG3 531 aaPredicted RBP13.42□□□□□ -0.26
SS18-215ENST00000580642 OR5M11Q96RB7 305 aa13.42□□□□□ -0.26
SS18-215ENST00000580642 DMRTA2Q96SC8 542 aa13.42□□□□□ -0.26
SS18-215ENST00000580642 TBX5Q99593 518 aa13.42□□□□□ -0.26
SS18-215ENST00000580642 ZNF416Q9BWM5 594 aa13.42□□□□□ -0.26
SS18-215ENST00000580642 DDX28Q9NUL7 540 aaKnown RBP13.42□□□□□ -0.26
SS18-215ENST00000580642 ASH2LQ9UBL3 628 aa13.42□□□□□ -0.26
SS18-215ENST00000580642 GDF2Q9UK05 429 aaPredicted RBP13.42□□□□□ -0.26
SS18-215ENST00000580642 TIMM10BQ9Y5J6 103 aa13.42□□□□□ -0.26
SS18-215ENST00000580642 ACOD1A6NK06 481 aa13.41□□□□□ -0.26
SS18-215ENST00000580642 ZNF878C9JN71 531 aa13.41□□□□□ -0.26
SS18-215ENST00000580642 J3QLW9 94 aa13.41□□□□□ -0.26
SS18-215ENST00000580642 CCRL2O00421 344 aa13.41□□□□□ -0.26
SS18-215ENST00000580642 ABHD16AO95870 558 aa13.41□□□□□ -0.26
SS18-215ENST00000580642 CPEP16870 476 aa13.41□□□□□ -0.26
SS18-215ENST00000580642 ZNF19P17023 458 aa13.41□□□□□ -0.26
SS18-215ENST00000580642 GALP22466 123 aa13.41□□□□□ -0.26
SS18-215ENST00000580642 PSMA1P25786 263 aaKnown RBP13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms