RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 DAOP14920 347 aa12.74□□□□□ -0.37
SS18-212ENST00000579061 CTLA4P16410 223 aa12.74□□□□□ -0.37
SS18-212ENST00000579061 USF1P22415 310 aaPredicted RBP12.74□□□□□ -0.37
SS18-212ENST00000579061 GIFP27352 417 aa12.74□□□□□ -0.37
SS18-212ENST00000579061 SLC6A6P31641 620 aa12.74□□□□□ -0.37
SS18-212ENST00000579061 NR4A2P43354 598 aa12.74□□□□□ -0.37
SS18-212ENST00000579061 GDI2P50395 445 aaKnown RBP12.74□□□□□ -0.37
SS18-212ENST00000579061 SCRN3Q0VDG4 424 aa12.74□□□□□ -0.37
SS18-212ENST00000579061 TSPAN31Q12999 210 aa12.74□□□□□ -0.37
SS18-212ENST00000579061 TMEM249Q2WGJ8 235 aa12.74□□□□□ -0.37
SS18-212ENST00000579061 TRPM8Q7Z2W7 1104 aa12.74□□□□□ -0.37
SS18-212ENST00000579061 LRP11Q86VZ4 500 aa12.74□□□□□ -0.37
SS18-212ENST00000579061 ZNF786Q8N393 782 aa12.74□□□□□ -0.37
SS18-212ENST00000579061 AKR7LQ8NHP1 331 aa12.74□□□□□ -0.37
SS18-212ENST00000579061 SYNPRQ8TBG9 265 aa12.74□□□□□ -0.37
SS18-212ENST00000579061 TRIM15Q9C019 465 aa12.74□□□□□ -0.37
SS18-212ENST00000579061 SYT4Q9H2B2 425 aa12.74□□□□□ -0.37
SS18-212ENST00000579061 SLCO1C1Q9NYB5 712 aa12.74□□□□□ -0.37
SS18-212ENST00000579061 EIF3KQ9UBQ5 218 aaKnown RBP12.74□□□□□ -0.37
SS18-212ENST00000579061 IL20RAQ9UHF4 553 aa12.74□□□□□ -0.37
SS18-212ENST00000579061 LYVE1Q9Y5Y7 322 aa12.74□□□□□ -0.37
SS18-212ENST00000579061 LOC100509620A0A075B734 347 aa12.73□□□□□ -0.37
SS18-212ENST00000579061 INAFM1C9JVW0 142 aa12.73□□□□□ -0.37
SS18-212ENST00000579061 IDH3BO43837 385 aa12.73□□□□□ -0.37
SS18-212ENST00000579061 SLC16A7O60669 478 aa12.73□□□□□ -0.37
SS18-212ENST00000579061 STAMBPO95630 424 aa12.73□□□□□ -0.37
SS18-212ENST00000579061 CRABP1P29762 137 aa12.73□□□□□ -0.37
SS18-212ENST00000579061 CDKN2AP42771 156 aaKnown RBP12.73□□□□□ -0.37
SS18-212ENST00000579061 KLF3P57682 345 aaPredicted RBP12.73□□□□□ -0.37
SS18-212ENST00000579061 LSM6P62312 80 aaKnown RBP12.73□□□□□ -0.37
SS18-212ENST00000579061 MS4A2Q01362 244 aa12.73□□□□□ -0.37
SS18-212ENST00000579061 MOGQ16653 247 aa12.73□□□□□ -0.37
SS18-212ENST00000579061 FAM98BQ52LJ0 330 aaKnown RBP12.73□□□□□ -0.37
SS18-212ENST00000579061 RPL13AP3Q6NVV1 102 aa12.73□□□□□ -0.37
SS18-212ENST00000579061 PGBD2Q6P3X8 592 aa12.73□□□□□ -0.37
SS18-212ENST00000579061 DNM1P34Q6PK57 102 aa12.73□□□□□ -0.37
SS18-212ENST00000579061 PTCHD4Q6ZW05 846 aa12.73□□□□□ -0.37
SS18-212ENST00000579061 GLB1L2Q8IW92 636 aa12.73□□□□□ -0.37
SS18-212ENST00000579061 ZCCHC24Q8N2G6 241 aaKnown RBP12.73□□□□□ -0.37
SS18-212ENST00000579061 BCAS4Q8TDM0 211 aa12.73□□□□□ -0.37
SS18-212ENST00000579061 UBASH3BQ8TF42 649 aa12.73□□□□□ -0.37
SS18-212ENST00000579061 ASB9Q96DX5 294 aa12.73□□□□□ -0.37
SS18-212ENST00000579061 FOXN4Q96NZ1 517 aa12.73□□□□□ -0.37
SS18-212ENST00000579061 ERMAPQ96PL5 475 aaPredicted RBP12.73□□□□□ -0.37
SS18-212ENST00000579061 MYEF2Q9P2K5 600 aaKnown RBP12.73□□□□□ -0.37
SS18-212ENST00000579061 DUSP13Q9UII6 198 aa12.73□□□□□ -0.37
SS18-212ENST00000579061 NDRG4Q9ULP0 352 aaKnown RBP12.73□□□□□ -0.37
SS18-212ENST00000579061 FZR1Q9UM11 496 aa12.73□□□□□ -0.37
SS18-212ENST00000579061 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.72□□□□□ -0.371e-8■■■■□ 23.5
SS18-212ENST00000579061 A0A1W2PPW3 197 aa12.72□□□□□ -0.37
SS18-212ENST00000579061 C5orf49A4QMS7 147 aa12.72□□□□□ -0.37
SS18-212ENST00000579061 H3BSA7 217 aa12.72□□□□□ -0.37
SS18-212ENST00000579061 TNFRSF11BO00300 401 aa12.72□□□□□ -0.37
SS18-212ENST00000579061 PPP1R3DO95685 299 aa12.72□□□□□ -0.37
SS18-212ENST00000579061 IGHV3-13P01766 116 aa12.72□□□□□ -0.37
SS18-212ENST00000579061 SCG5P05408 212 aa12.72□□□□□ -0.37
SS18-212ENST00000579061 CCNOP22674 350 aa12.72□□□□□ -0.37
SS18-212ENST00000579061 WNT5AP41221 380 aa12.72□□□□□ -0.37
SS18-212ENST00000579061 ALDH3B1P43353 468 aa12.72□□□□□ -0.37
SS18-212ENST00000579061 TRAP1Q12931 704 aaKnown RBP12.72□□□□□ -0.37
SS18-212ENST00000579061 AQP6Q13520 282 aa12.72□□□□□ -0.37
SS18-212ENST00000579061 GK3PQ14409 553 aa12.72□□□□□ -0.37
SS18-212ENST00000579061 KCNMB1Q16558 191 aa12.72□□□□□ -0.37
SS18-212ENST00000579061 CARTPTQ16568 116 aa12.72□□□□□ -0.37
SS18-212ENST00000579061 NKPD1Q17RQ9 610 aa12.72□□□□□ -0.37
SS18-212ENST00000579061 PGM2L1Q6PCE3 622 aa12.72□□□□□ -0.37
SS18-212ENST00000579061 ZNF620Q6ZNG0 422 aa12.72□□□□□ -0.37
SS18-212ENST00000579061 OR4C15Q8NGM1 316 aa12.72□□□□□ -0.37
SS18-212ENST00000579061 OR1J1Q8NGS3 322 aa12.72□□□□□ -0.37
SS18-212ENST00000579061 NUAK2Q9H093 628 aa12.72□□□□□ -0.37
SS18-212ENST00000579061 OR51B6Q9H340 312 aa12.72□□□□□ -0.37
SS18-212ENST00000579061 TPK1Q9H3S4 243 aa12.72□□□□□ -0.37
SS18-212ENST00000579061 ELOVL3Q9HB03 270 aa12.72□□□□□ -0.37
SS18-212ENST00000579061 EMC7Q9NPA0 242 aa12.72□□□□□ -0.37
SS18-212ENST00000579061 TAAR3PQ9P1P4 343 aa12.72□□□□□ -0.37
SS18-212ENST00000579061 COA3Q9Y2R0 106 aaPredicted RBP12.72□□□□□ -0.37
SS18-212ENST00000579061 SGCEO43556 437 aa12.71□□□□□ -0.37
SS18-212ENST00000579061 CLPTM1O96005 669 aa12.71□□□□□ -0.37
SS18-212ENST00000579061 RENP00797 406 aa12.71□□□□□ -0.37
SS18-212ENST00000579061 HOXB6P17509 224 aaKnown RBP12.71□□□□□ -0.37
SS18-212ENST00000579061 TUBG1P23258 451 aa12.71□□□□□ -0.37
SS18-212ENST00000579061 GZMKP49863 264 aa12.71□□□□□ -0.37
SS18-212ENST00000579061 ERVS71-1P61550 626 aa12.71□□□□□ -0.37
SS18-212ENST00000579061 MRPS11P82912 194 aaKnown RBP12.71□□□□□ -0.37
SS18-212ENST00000579061 ZNF718Q3SXZ3 478 aa12.71□□□□□ -0.37
SS18-212ENST00000579061 ZNF770Q6IQ21 691 aaPredicted RBP12.71□□□□□ -0.37
SS18-212ENST00000579061 ZNF774Q6NX45 483 aa12.71□□□□□ -0.37
SS18-212ENST00000579061 ARL9Q6T311 187 aa12.71□□□□□ -0.37
SS18-212ENST00000579061 UGT2A3Q6UWM9 527 aa12.71□□□□□ -0.37
SS18-212ENST00000579061 JAZF1Q86VZ6 243 aa12.71□□□□□ -0.37
SS18-212ENST00000579061 ZNF101Q8IZC7 436 aa12.71□□□□□ -0.37
SS18-212ENST00000579061 SNX33Q8WV41 574 aa12.71□□□□□ -0.37
SS18-212ENST00000579061 MARS2Q96GW9 593 aaKnown RBP12.71□□□□□ -0.37
SS18-212ENST00000579061 SAMD8Q96LT4 415 aa12.71□□□□□ -0.37
SS18-212ENST00000579061 LRGUKQ96M69 825 aa12.71□□□□□ -0.37
SS18-212ENST00000579061 BTBD10Q9BSF8 475 aa12.71□□□□□ -0.37
SS18-212ENST00000579061 IFT27Q9BW83 186 aa12.71□□□□□ -0.37
SS18-212ENST00000579061 BPESC1Q9GZL8 116 aa12.71□□□□□ -0.37
SS18-212ENST00000579061 RACGAP1Q9H0H5 632 aa12.71□□□□□ -0.37
SS18-212ENST00000579061 TUBG2Q9NRH3 451 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms