RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 SRA1Q9HD15 236 aaKnown RBP16.82■□□□□ 0.28
SS18-209ENST00000578595 RPRD1BQ9NQG5 326 aaKnown RBP16.82■□□□□ 0.28
SS18-209ENST00000578595 DUSP13Q9UII6 198 aa16.82■□□□□ 0.28
SS18-209ENST00000578595 TIMM10BQ9Y5J6 103 aa16.82■□□□□ 0.28
SS18-209ENST00000578595 A0A1W2PPW3 197 aa16.81■□□□□ 0.28
SS18-209ENST00000578595 C5orf49A4QMS7 147 aa16.81■□□□□ 0.28
SS18-209ENST00000578595 FKBP6O75344 327 aa16.81■□□□□ 0.28
SS18-209ENST00000578595 LY6HO94772 140 aa16.81■□□□□ 0.28
SS18-209ENST00000578595 HLA-DQA2P01906 255 aa16.81■□□□□ 0.28
SS18-209ENST00000578595 ERCC1P07992 297 aaPredicted RBP16.81■□□□□ 0.28
SS18-209ENST00000578595 INHBBP09529 407 aa16.81■□□□□ 0.28
SS18-209ENST00000578595 HOXB6P17509 224 aaKnown RBP16.81■□□□□ 0.28
SS18-209ENST00000578595 PSG4Q00888 419 aa16.81■□□□□ 0.28
SS18-209ENST00000578595 SCRN3Q0VDG4 424 aa16.81■□□□□ 0.28
SS18-209ENST00000578595 TNK1Q13470 666 aa16.81■□□□□ 0.28
SS18-209ENST00000578595 ENDOGQ14249 297 aaKnown RBP16.81■□□□□ 0.28
SS18-209ENST00000578595 EFNB3Q15768 340 aa16.81■□□□□ 0.28
SS18-209ENST00000578595 MST1LQ2TV78 715 aa16.81■□□□□ 0.28
SS18-209ENST00000578595 C1orf146Q5VVC0 180 aa16.81■□□□□ 0.28
SS18-209ENST00000578595 RGS7BPQ6MZT1 257 aaPredicted RBP16.81■□□□□ 0.28
SS18-209ENST00000578595 ZNF774Q6NX45 483 aa16.81■□□□□ 0.28
SS18-209ENST00000578595 FOXL2NBQ6ZUU3 175 aa16.81■□□□□ 0.28
SS18-209ENST00000578595 CIARTQ8N365 385 aaPredicted RBP16.81■□□□□ 0.28
SS18-209ENST00000578595 CPEB3Q8NE35 698 aaKnown RBP16.81■□□□□ 0.28
SS18-209ENST00000578595 OR10H5Q8NGA6 315 aa16.81■□□□□ 0.28
SS18-209ENST00000578595 OR52E2Q8NGJ4 325 aa16.81■□□□□ 0.28
SS18-209ENST00000578595 MRPL24Q96A35 216 aaKnown RBP16.81■□□□□ 0.28
SS18-209ENST00000578595 SORCS2Q96PQ0 1159 aa16.81■□□□□ 0.28
SS18-209ENST00000578595 TSSK6Q9BXA6 273 aa16.81■□□□□ 0.28
SS18-209ENST00000578595 MRPL37Q9BZE1 423 aaKnown RBP16.81■□□□□ 0.28
SS18-209ENST00000578595 PLA2G12AQ9BZM1 189 aa16.81■□□□□ 0.28
SS18-209ENST00000578595 H3BN98 237 aa16.8■□□□□ 0.28
SS18-209ENST00000578595 ARPC3O15145 178 aa16.8■□□□□ 0.28
SS18-209ENST00000578595 DOK2O60496 412 aa16.8■□□□□ 0.28
SS18-209ENST00000578595 CIB2O75838 187 aa16.8■□□□□ 0.28
SS18-209ENST00000578595 GPANK1O95872 356 aa16.8■□□□□ 0.28
SS18-209ENST00000578595 FOSL1P15407 271 aa16.8■□□□□ 0.28
SS18-209ENST00000578595 GLRXP35754 106 aa16.8■□□□□ 0.28
SS18-209ENST00000578595 KHDRBS1Q07666 443 aaKnown RBP eCLIP16.8■□□□□ 0.28
SS18-209ENST00000578595 RASSF6Q6ZTQ3 369 aa16.8■□□□□ 0.28
SS18-209ENST00000578595 CCDC121Q6ZUS5 278 aa16.8■□□□□ 0.28
SS18-209ENST00000578595 ZNF525Q8N782 197 aa16.8■□□□□ 0.28
SS18-209ENST00000578595 TEX47Q8TBZ9 253 aa16.8■□□□□ 0.28
SS18-209ENST00000578595 RHNO1Q9BSD3 238 aa16.8■□□□□ 0.28
SS18-209ENST00000578595 WNT5BQ9H1J7 359 aa16.8■□□□□ 0.28
SS18-209ENST00000578595 ARMC1Q9NVT9 282 aa16.8■□□□□ 0.28
SS18-209ENST00000578595 PDP1Q9P0J1 537 aaPredicted RBP16.8■□□□□ 0.28
SS18-209ENST00000578595 EIF3KQ9UBQ5 218 aaKnown RBP16.8■□□□□ 0.28
SS18-209ENST00000578595 TCRBV3S1A0A5B6 114 aa16.79■□□□□ 0.28
SS18-209ENST00000578595 RNF223E7ERA6 249 aa16.79■□□□□ 0.28
SS18-209ENST00000578595 IDH3BO43837 385 aa16.79■□□□□ 0.28
SS18-209ENST00000578595 MPZL1O95297 269 aa16.79■□□□□ 0.28
SS18-209ENST00000578595 SNAP29O95721 258 aa16.79■□□□□ 0.28
SS18-209ENST00000578595 SCG5P05408 212 aa16.79■□□□□ 0.28
SS18-209ENST00000578595 RAD52P43351 418 aa16.79■□□□□ 0.28
SS18-209ENST00000578595 HTR5AP47898 357 aa16.79■□□□□ 0.28
SS18-209ENST00000578595 PPOXP50336 477 aa16.79■□□□□ 0.28
SS18-209ENST00000578595 EFNA4P52798 201 aa16.79■□□□□ 0.28
SS18-209ENST00000578595 SELENOVP59797 346 aa16.79■□□□□ 0.28
SS18-209ENST00000578595 ERVS71-1P61550 626 aa16.79■□□□□ 0.28
SS18-209ENST00000578595 AQP6Q13520 282 aa16.79■□□□□ 0.28
SS18-209ENST00000578595 MEP1BQ16820 701 aa16.79■□□□□ 0.28
SS18-209ENST00000578595 ZNF770Q6IQ21 691 aaPredicted RBP16.79■□□□□ 0.28
SS18-209ENST00000578595 CYB561A3Q8NBI2 242 aa16.79■□□□□ 0.28
SS18-209ENST00000578595 OR8D4Q8NGM9 314 aa16.79■□□□□ 0.28
SS18-209ENST00000578595 C11orf40Q8WZ69 217 aa16.79■□□□□ 0.28
SS18-209ENST00000578595 FEVQ99581 238 aa16.79■□□□□ 0.28
SS18-209ENST00000578595 SMR3AQ99954 134 aa16.79■□□□□ 0.28
SS18-209ENST00000578595 NIPSNAP1Q9BPW8 284 aa16.79■□□□□ 0.28
SS18-209ENST00000578595 DGCR6LQ9BY27 220 aa16.79■□□□□ 0.28
SS18-209ENST00000578595 BCL2L14Q9BZR8 327 aa16.79■□□□□ 0.28
SS18-209ENST00000578595 RAB1BQ9H0U4 201 aa16.79■□□□□ 0.28
SS18-209ENST00000578595 TPK1Q9H3S4 243 aa16.79■□□□□ 0.28
SS18-209ENST00000578595 GSX1Q9H4S2 264 aaPredicted RBP16.79■□□□□ 0.28
SS18-209ENST00000578595 ZNF556Q9HAH1 456 aa16.79■□□□□ 0.28
SS18-209ENST00000578595 DLL4Q9NR61 685 aa16.79■□□□□ 0.28
SS18-209ENST00000578595 PLEK2Q9NYT0 353 aa16.79■□□□□ 0.28
SS18-209ENST00000578595 KIF17Q9P2E2 1029 aa16.79■□□□□ 0.28
SS18-209ENST00000578595 ASH2LQ9UBL3 628 aa16.79■□□□□ 0.28
SS18-209ENST00000578595 FBXO9Q9UK97 447 aaPredicted RBP16.79■□□□□ 0.28
SS18-209ENST00000578595 C2CD3Q4AC94 2353 aa16.79■□□□□ 0.28
SS18-209ENST00000578595 CSPG4Q6UVK1 2322 aa16.78■□□□□ 0.28
SS18-209ENST00000578595 FAM171A2A8MVW0 826 aa16.78■□□□□ 0.28
SS18-209ENST00000578595 M0R233 179 aa16.78■□□□□ 0.28
SS18-209ENST00000578595 DCTN6O00399 190 aa16.78■□□□□ 0.28
SS18-209ENST00000578595 SGCEO43556 437 aa16.78■□□□□ 0.28
SS18-209ENST00000578595 IGFBP1P08833 259 aaPredicted RBP16.78■□□□□ 0.28
SS18-209ENST00000578595 ADRA2AP08913 450 aa16.78■□□□□ 0.28
SS18-209ENST00000578595 ARHGDIAP52565 204 aa16.78■□□□□ 0.28
SS18-209ENST00000578595 GLO1Q04760 184 aa16.78■□□□□ 0.28
SS18-209ENST00000578595 DBPQ10586 325 aaPredicted RBP16.78■□□□□ 0.28
SS18-209ENST00000578595 GK3PQ14409 553 aa16.78■□□□□ 0.28
SS18-209ENST00000578595 MAD2L1BPQ15013 274 aaPredicted RBP16.78■□□□□ 0.28
SS18-209ENST00000578595 NKPD1Q17RQ9 610 aa16.78■□□□□ 0.28
SS18-209ENST00000578595 ALKBH6Q3KRA9 238 aa16.78■□□□□ 0.28
SS18-209ENST00000578595 SPATA46Q5T0L3 261 aa16.78■□□□□ 0.28
SS18-209ENST00000578595 UNQ6126/PRO20091Q6UXV3 157 aa16.78■□□□□ 0.28
SS18-209ENST00000578595 Q71RC1 249 aaPredicted RBP16.78■□□□□ 0.28
SS18-209ENST00000578595 LRP11Q86VZ4 500 aa16.78■□□□□ 0.28
SS18-209ENST00000578595 MAPK1IP1LQ8NDC0 245 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms