RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 LCN2P80188 198 aa17.83■□□□□ 0.44
VPS53-216ENST00000574029 CYLC2Q14093 348 aaPredicted RBP17.83■□□□□ 0.44
VPS53-216ENST00000574029 TUSC1Q2TAM9 212 aa17.83■□□□□ 0.44
VPS53-216ENST00000574029 AWAT1Q58HT5 328 aa17.83■□□□□ 0.44
VPS53-216ENST00000574029 SPRNQ5BIV9 151 aa17.83■□□□□ 0.44
VPS53-216ENST00000574029 ALG10Q5BKT4 473 aa17.83■□□□□ 0.44
VPS53-216ENST00000574029 RABL3Q5HYI8 236 aa17.83■□□□□ 0.44
VPS53-216ENST00000574029 FOXL2NBQ6ZUU3 175 aa17.83■□□□□ 0.44
VPS53-216ENST00000574029 ALDH16A1Q8IZ83 802 aa17.83■□□□□ 0.44
VPS53-216ENST00000574029 ABHD4Q8TB40 342 aa17.83■□□□□ 0.44
VPS53-216ENST00000574029 DIRC2Q96SL1 478 aa17.83■□□□□ 0.44
VPS53-216ENST00000574029 TIMM10BQ9Y5J6 103 aa17.83■□□□□ 0.44
VPS53-216ENST00000574029 ARHGAP32A7KAX9 2087 aa17.83■□□□□ 0.44
VPS53-216ENST00000574029 ISPDA4D126 451 aa17.82■□□□□ 0.44
VPS53-216ENST00000574029 NGFP01138 241 aa17.82■□□□□ 0.44
VPS53-216ENST00000574029 IGHMP01871 453 aa17.82■□□□□ 0.44
VPS53-216ENST00000574029 FPR2P25090 351 aa17.82■□□□□ 0.44
VPS53-216ENST00000574029 LAP3P28838 519 aa17.82■□□□□ 0.44
VPS53-216ENST00000574029 OR1E2P47887 323 aa17.82■□□□□ 0.44
VPS53-216ENST00000574029 UBA52P62987 128 aaKnown RBP17.82■□□□□ 0.44
VPS53-216ENST00000574029 SF3A3Q12874 501 aaKnown RBP eCLIP17.82■□□□□ 0.44
VPS53-216ENST00000574029 ZNF771Q7L3S4 317 aaPredicted RBP17.82■□□□□ 0.44
VPS53-216ENST00000574029 TREML1Q86YW5 311 aa17.82■□□□□ 0.44
VPS53-216ENST00000574029 FNDC8Q8TC99 324 aa17.82■□□□□ 0.44
VPS53-216ENST00000574029 ST7LQ8TDW4 575 aa17.82■□□□□ 0.44
VPS53-216ENST00000574029 DVL3Q92997 716 aaPredicted RBP17.82■□□□□ 0.44
VPS53-216ENST00000574029 SH3GL1Q99961 368 aa17.82■□□□□ 0.44
VPS53-216ENST00000574029 NTN4Q9HB63 628 aa17.82■□□□□ 0.44
VPS53-216ENST00000574029 UBAP1Q9NZ09 502 aa17.82■□□□□ 0.44
VPS53-216ENST00000574029 SLC22A2O15244 555 aa17.81■□□□□ 0.44
VPS53-216ENST00000574029 PIP5K1CO60331 668 aa17.81■□□□□ 0.44
VPS53-216ENST00000574029 FOXH1O75593 365 aa17.81■□□□□ 0.44
VPS53-216ENST00000574029 ZFP36P26651 326 aaKnown RBP17.81■□□□□ 0.44
VPS53-216ENST00000574029 RPL27P61353 136 aaKnown RBP17.81■□□□□ 0.44
VPS53-216ENST00000574029 PCBD1P61457 104 aa17.81■□□□□ 0.44
VPS53-216ENST00000574029 KLF10Q13118 480 aa17.81■□□□□ 0.44
VPS53-216ENST00000574029 TOP3AQ13472 1001 aaPredicted RBP17.81■□□□□ 0.44
VPS53-216ENST00000574029 ZMAT1Q5H9K5 638 aa17.81■□□□□ 0.44
VPS53-216ENST00000574029 CLDN22Q8N7P3 220 aa17.81■□□□□ 0.44
VPS53-216ENST00000574029 OR8J3Q8NGG0 315 aa17.81■□□□□ 0.44
VPS53-216ENST00000574029 GEMIN6Q8WXD5 167 aaKnown RBP17.81■□□□□ 0.44
VPS53-216ENST00000574029 C4orf45Q96LM5 186 aa17.81■□□□□ 0.44
VPS53-216ENST00000574029 RBP7Q96R05 134 aa17.81■□□□□ 0.44
VPS53-216ENST00000574029 ECSITQ9BQ95 431 aa17.81■□□□□ 0.44
VPS53-216ENST00000574029 ELOVL3Q9HB03 270 aa17.81■□□□□ 0.44
VPS53-216ENST00000574029 NPTNQ9Y639 398 aa17.81■□□□□ 0.44
VPS53-216ENST00000574029 WNK2Q9Y3S1 2297 aa17.81■□□□□ 0.44
VPS53-216ENST00000574029 HTR3EA5X5Y0 456 aa17.8■□□□□ 0.44
VPS53-216ENST00000574029 FXYD1O00168 92 aa17.8■□□□□ 0.44
VPS53-216ENST00000574029 IGHV2-70P01814 119 aa17.8■□□□□ 0.44
VPS53-216ENST00000574029 ARHGDIAP52565 204 aa17.8■□□□□ 0.44
VPS53-216ENST00000574029 CDK5R2Q13319 367 aa17.8■□□□□ 0.44
VPS53-216ENST00000574029 MTX3Q5HYI7 312 aa17.8■□□□□ 0.44
VPS53-216ENST00000574029 ZNF774Q6NX45 483 aa17.8■□□□□ 0.44
VPS53-216ENST00000574029 ERICH5Q6P6B1 374 aa17.8■□□□□ 0.44
VPS53-216ENST00000574029 LRRC75AQ8NAA5 344 aa17.8■□□□□ 0.44
VPS53-216ENST00000574029 C22orf15Q8WYQ4 148 aa17.8■□□□□ 0.44
VPS53-216ENST00000574029 LRRC58Q96CX6 371 aa17.8■□□□□ 0.44
VPS53-216ENST00000574029 MSL2Q9HCI7 577 aa17.8■□□□□ 0.44
VPS53-216ENST00000574029 DDX28Q9NUL7 540 aaKnown RBP17.8■□□□□ 0.44
VPS53-216ENST00000574029 DCAF16Q9NXF7 216 aa17.8■□□□□ 0.44
VPS53-216ENST00000574029 IFNA14P01570 189 aa17.79■□□□□ 0.44
VPS53-216ENST00000574029 TNFAIP6P98066 277 aaPredicted RBP17.79■□□□□ 0.44
VPS53-216ENST00000574029 PSG7Q13046 419 aa17.79■□□□□ 0.44
VPS53-216ENST00000574029 HNRNPA0Q13151 305 aaKnown RBP17.79■□□□□ 0.44
VPS53-216ENST00000574029 ENDOGQ14249 297 aaKnown RBP17.79■□□□□ 0.44
VPS53-216ENST00000574029 COQ5Q5HYK3 327 aa17.79■□□□□ 0.44
VPS53-216ENST00000574029 FAM205BPQ63HN1 556 aa17.79■□□□□ 0.44
VPS53-216ENST00000574029 ZER1Q7Z7L7 766 aa17.79■□□□□ 0.44
VPS53-216ENST00000574029 SYT9Q86SS6 491 aa17.79■□□□□ 0.44
VPS53-216ENST00000574029 DEFB108BQ8NET1 73 aa17.79■□□□□ 0.44
VPS53-216ENST00000574029 POP5Q969H6 163 aaKnown RBP17.79■□□□□ 0.44
VPS53-216ENST00000574029 BPIFA2Q96DR5 249 aa17.79■□□□□ 0.44
VPS53-216ENST00000574029 ZNF583Q96ND8 569 aa17.79■□□□□ 0.44
VPS53-216ENST00000574029 ELAC2Q9BQ52 826 aaKnown RBP17.79■□□□□ 0.44
VPS53-216ENST00000574029 POLR3KQ9Y2Y1 108 aaPredicted RBP17.79■□□□□ 0.44
VPS53-216ENST00000574029 PPIAL4AQ9Y536 164 aa17.79■□□□□ 0.44
VPS53-216ENST00000574029 NPPAP01160 153 aa17.78■□□□□ 0.44
VPS53-216ENST00000574029 HKR1P10072 659 aa17.78■□□□□ 0.44
VPS53-216ENST00000574029 IFI30P13284 250 aa17.78■□□□□ 0.44
VPS53-216ENST00000574029 MSR1P21757 451 aa17.78■□□□□ 0.44
VPS53-216ENST00000574029 GUCA1AP43080 201 aaPredicted RBP17.78■□□□□ 0.44
VPS53-216ENST00000574029 GYS2P54840 703 aa17.78■□□□□ 0.44
VPS53-216ENST00000574029 CTXN1P60606 82 aa17.78■□□□□ 0.44
VPS53-216ENST00000574029 ST3GAL3Q11203 375 aa17.78■□□□□ 0.44
VPS53-216ENST00000574029 MAPRE2Q15555 327 aa17.78■□□□□ 0.44
VPS53-216ENST00000574029 CYBRD1Q53TN4 286 aa17.78■□□□□ 0.44
VPS53-216ENST00000574029 ARL9Q6T311 187 aa17.78■□□□□ 0.44
VPS53-216ENST00000574029 IGFN1Q86VF2 1251 aa17.78■□□□□ 0.44
VPS53-216ENST00000574029 DCLRE1CQ96SD1 692 aaKnown RBP17.78■□□□□ 0.44
VPS53-216ENST00000574029 ZNF747Q9BV97 191 aa17.78■□□□□ 0.44
VPS53-216ENST00000574029 MMP26Q9NRE1 261 aa17.78■□□□□ 0.44
VPS53-216ENST00000574029 TMEM106BQ9NUM4 274 aa17.78■□□□□ 0.44
VPS53-216ENST00000574029 PURGQ9UJV8 347 aaKnown RBP17.78■□□□□ 0.44
VPS53-216ENST00000574029 NDRG4Q9ULP0 352 aaKnown RBP17.78■□□□□ 0.44
VPS53-216ENST00000574029 A4GNTQ9UNA3 340 aa17.78■□□□□ 0.44
VPS53-216ENST00000574029 A0A1W2PPL8 197 aa17.77■□□□□ 0.44
VPS53-216ENST00000574029 A6NIZ1 184 aa17.77■□□□□ 0.44
VPS53-216ENST00000574029 BBIP1A8MTZ0 92 aa17.77■□□□□ 0.44
VPS53-216ENST00000574029 TIMM8AO60220 97 aaPredicted RBP17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 341.3 ms