RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 C10orf128Q5T292 105 aa6.4□□□□□ -1.38
NUP88-205ENST00000572809 GKAP1Q5VSY0 366 aaPredicted RBP6.4□□□□□ -1.38
NUP88-205ENST00000572809 STEAP3Q658P3 488 aa6.4□□□□□ -1.38
NUP88-205ENST00000572809 ZNF730Q6ZMV8 503 aa6.4□□□□□ -1.38
NUP88-205ENST00000572809 TMPRSS11FQ6ZWK6 438 aa6.4□□□□□ -1.38
NUP88-205ENST00000572809 MBOAT2Q6ZWT7 520 aa6.4□□□□□ -1.38
NUP88-205ENST00000572809 TSEN54Q7Z6J9 526 aaKnown RBP6.4□□□□□ -1.38
NUP88-205ENST00000572809 PIGWQ7Z7B1 504 aa6.4□□□□□ -1.38
NUP88-205ENST00000572809 ZNF584Q8IVC4 421 aa6.4□□□□□ -1.38
NUP88-205ENST00000572809 OFCC1Q8IZS5 231 aa6.4□□□□□ -1.38
NUP88-205ENST00000572809 ZCCHC24Q8N2G6 241 aaKnown RBP6.4□□□□□ -1.38
NUP88-205ENST00000572809 SVOPLQ8N434 492 aa6.4□□□□□ -1.38
NUP88-205ENST00000572809 RNF148Q8N7C7 305 aa6.4□□□□□ -1.38
NUP88-205ENST00000572809 NOXO1Q8NFA2 376 aa6.4□□□□□ -1.38
NUP88-205ENST00000572809 NEU4Q8WWR8 484 aaPredicted RBP6.4□□□□□ -1.38
NUP88-205ENST00000572809 ACOT11Q8WXI4 607 aaPredicted RBP6.4□□□□□ -1.38
NUP88-205ENST00000572809 HDAC2Q92769 488 aaKnown RBP6.4□□□□□ -1.38
NUP88-205ENST00000572809 MRPL24Q96A35 216 aaKnown RBP6.4□□□□□ -1.38
NUP88-205ENST00000572809 FOXN4Q96NZ1 517 aa6.4□□□□□ -1.38
NUP88-205ENST00000572809 RBP7Q96R05 134 aa6.4□□□□□ -1.38
NUP88-205ENST00000572809 MS4A5Q9H3V2 200 aa6.4□□□□□ -1.38
NUP88-205ENST00000572809 ANKRD19PQ9H560 264 aa6.4□□□□□ -1.38
NUP88-205ENST00000572809 NMNAT1Q9HAN9 279 aaPredicted RBP6.4□□□□□ -1.38
NUP88-205ENST00000572809 SIAEQ9HAT2 523 aa6.4□□□□□ -1.38
NUP88-205ENST00000572809 SMURF2Q9HAU4 748 aa6.4□□□□□ -1.38
NUP88-205ENST00000572809 SMURF1Q9HCE7 757 aa6.4□□□□□ -1.38
NUP88-205ENST00000572809 MYOZ1Q9NP98 299 aaPredicted RBP6.4□□□□□ -1.38
NUP88-205ENST00000572809 SPAG4Q9NPE6 437 aa6.4□□□□□ -1.38
NUP88-205ENST00000572809 YAE1D1Q9NRH1 226 aa6.4□□□□□ -1.38
NUP88-205ENST00000572809 MAN2C1Q9NTJ4 1040 aa6.4□□□□□ -1.38
NUP88-205ENST00000572809 DCAF13Q9NV06 445 aaKnown RBP6.4□□□□□ -1.38
NUP88-205ENST00000572809 ADA2Q9NZK5 511 aa6.4□□□□□ -1.38
NUP88-205ENST00000572809 ENPP4Q9Y6X5 453 aa6.4□□□□□ -1.38
NUP88-205ENST00000572809 CSPG4Q6UVK1 2322 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 HIVEP2P31629 2446 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 TRAV27A0A087WT01 109 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 IQCMA0A1B0GVH7 501 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 SLC22A23A1A5C7 686 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 A8MV72 311 aaPredicted RBP6.39□□□□□ -1.39
NUP88-205ENST00000572809 VWC2LB2RUY7 222 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 SYNGR3O43761 229 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 CRLF1O75462 422 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 SLC2A10O95528 541 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 STAMBPO95630 424 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 H1F0P07305 194 aaKnown RBP6.39□□□□□ -1.39
NUP88-205ENST00000572809 NR2C1P13056 603 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 CCL2P13500 99 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 DAOP14920 347 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 RAC2P15153 192 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 RHCEP18577 417 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 TCN1P20061 433 aaPredicted RBP6.39□□□□□ -1.39
NUP88-205ENST00000572809 USF1P22415 310 aaPredicted RBP6.39□□□□□ -1.39
NUP88-205ENST00000572809 CDAP32320 146 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 RPL4P36578 427 aaKnown RBP6.39□□□□□ -1.39
NUP88-205ENST00000572809 RAD52P43351 418 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 NR4A2P43354 598 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 RPS23P62266 143 aaKnown RBP6.39□□□□□ -1.39
NUP88-205ENST00000572809 GNGT1P63211 74 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 MRPS34P82930 218 aaKnown RBP6.39□□□□□ -1.39
NUP88-205ENST00000572809 CD47Q08722 323 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 TOP3AQ13472 1001 aaPredicted RBP6.39□□□□□ -1.39
NUP88-205ENST00000572809 FHL1Q13642 323 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 TMEM249Q2WGJ8 235 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 ZBED5Q49AG3 693 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 FAM27BQ5VT28 67 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 CYB5R2Q6BCY4 276 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 SLC25A47Q6Q0C1 308 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 LCNL1Q6ZST4 164 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 ZBTB46Q86UZ6 589 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 IGFN1Q86VF2 1251 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 MEX3DQ86XN8 651 aaKnown RBP6.39□□□□□ -1.39
NUP88-205ENST00000572809 ARIH2OSQ8N7S6 290 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 LRRC75AQ8NAA5 344 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 ZNF540Q8NDQ6 660 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 RBM15BQ8NDT2 890 aaKnown RBP6.39□□□□□ -1.39
NUP88-205ENST00000572809 SLC30A7Q8NEW0 376 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 OR1J2Q8NGS2 313 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 FNDC8Q8TC99 324 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 SLC7A13Q8TCU3 470 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 NSMAFQ92636 917 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 NMD3Q96D46 503 aaKnown RBP6.39□□□□□ -1.39
NUP88-205ENST00000572809 PYURFQ96I23 114 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 C7orf34Q96L11 122 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 LRRC37BQ96QE4 947 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 CDRT15Q96T59 188 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 PIMREGQ9BSJ6 248 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 ALG12Q9BV10 488 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 MRPL37Q9BZE1 423 aaKnown RBP6.39□□□□□ -1.39
NUP88-205ENST00000572809 LRMDAQ9H2I8 198 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 C1orf198Q9H425 327 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 GORASP2Q9H8Y8 452 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 CDH20Q9HBT6 801 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 DYNLRB1Q9NP97 96 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 CCNB1IP1Q9NPC3 277 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 SLC7A8Q9UHI5 535 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 TAGLN3Q9UI15 199 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 ADAM21Q9UKJ8 722 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 SAMD4AQ9UPU9 718 aaKnown RBP6.39□□□□□ -1.39
NUP88-205ENST00000572809 ARL2BPQ9Y2Y0 163 aa6.39□□□□□ -1.39
NUP88-205ENST00000572809 ARFGEF3Q5TH69 2177 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms