RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 MAPRE2Q15555 327 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 TUSC1Q2TAM9 212 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 ALKBH6Q3KRA9 238 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 SPRNQ5BIV9 151 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 LIPNQ5VXI9 398 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 RANBP3LQ86VV4 465 aaPredicted RBP5.73□□□□□ -1.49
VPS53-213ENST00000572334 KRT73Q86Y46 540 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 C11orf65Q8NCR3 313 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 CPEB3Q8NE35 698 aaKnown RBP5.73□□□□□ -1.49
VPS53-213ENST00000572334 BHLHE22Q8NFJ8 381 aaPredicted RBP5.73□□□□□ -1.49
VPS53-213ENST00000572334 OR4K5Q8NGD3 323 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 RAB2BQ8WUD1 216 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 MCHR2Q969V1 340 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 NABP1Q96AH0 204 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 TMEM186Q96B77 213 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 SLC25A44Q96H78 314 aaPredicted RBP5.73□□□□□ -1.49
VPS53-213ENST00000572334 CNBD2Q96M20 576 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 ZNF347Q96SE7 839 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 ZNF607Q96SK3 696 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 MS4A5Q9H3V2 200 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 METTL17Q9H7H0 456 aaPredicted RBP5.73□□□□□ -1.49
VPS53-213ENST00000572334 KAT8Q9H7Z6 458 aaKnown RBP5.73□□□□□ -1.49
VPS53-213ENST00000572334 EVA1AQ9H8M9 152 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 LPAR2Q9HBW0 351 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 B3GAT2Q9NPZ5 323 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 INIPQ9NRY2 104 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 HIF1ANQ9NWT6 349 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 TREM2Q9NZC2 230 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 TAAR3PQ9P1P4 343 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 NIPSNAP3AQ9UFN0 247 aaPredicted RBP5.73□□□□□ -1.49
VPS53-213ENST00000572334 DUSP13Q9UII6 198 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 SLC7A7Q9UM01 511 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 UGT2A1Q9Y4X1 527 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 CACNG2Q9Y698 323 aa5.73□□□□□ -1.49
VPS53-213ENST00000572334 TRAPPC13A5PLN9 417 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 NOTOA8MTQ0 251 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 CLDN25C9JDP6 229 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 BOLA2-SMG1P6H3BVE0 249 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 SULT1C4O75897 302 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 SNAP29O95721 258 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 RAB36O95755 333 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 TFP02787 698 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 ERCC1P07992 297 aaPredicted RBP5.72□□□□□ -1.49
VPS53-213ENST00000572334 QDPRP09417 244 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 OR8G3PP0DMU2 310 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 FCGR1AP12314 374 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 TNFRSF1BP20333 461 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 CFPP27918 469 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 SRP14P37108 136 aaKnown RBP5.72□□□□□ -1.49
VPS53-213ENST00000572334 RBMXP38159 391 aaKnown RBP5.72□□□□□ -1.49
VPS53-213ENST00000572334 WNT5AP41221 380 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 UGT2B15P54855 530 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 UCP2P55851 309 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 GNG2P59768 71 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 MYBPC1Q00872 1141 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 RPL18Q07020 188 aaKnown RBP5.72□□□□□ -1.49
VPS53-213ENST00000572334 RBBP4Q09028 425 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 C10orf128Q5T292 105 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 ARMC4Q5T2S8 1044 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 RGS7BPQ6MZT1 257 aaPredicted RBP5.72□□□□□ -1.49
VPS53-213ENST00000572334 PGM2L1Q6PCE3 622 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 FKBP9P1Q75LS8 142 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 GLCCI1Q86VQ1 547 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 CALHM3Q86XJ0 350 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 NKAIN4Q8IVV8 208 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 C10orf53Q8N6V4 93 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 SLC30A7Q8NEW0 376 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 PFN4Q8NHR9 129 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 VANGL1Q8TAA9 524 aaPredicted RBP5.72□□□□□ -1.49
VPS53-213ENST00000572334 ASB10Q8WXI3 467 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 ZNF566Q969W8 418 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 NEURL2Q9BR09 285 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 TMPRSS13Q9BYE2 586 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 MROQ9BYG7 248 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 OR51B6Q9H340 312 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 SP140LQ9H930 580 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 NANSQ9NR45 359 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 C20orf141Q9NUB4 165 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 NKIRAS2Q9NYR9 191 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 DAPK2Q9UIK4 370 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 LEF1Q9UJU2 399 aaPredicted RBP5.72□□□□□ -1.49
VPS53-213ENST00000572334 ZNF229Q9UJW7 825 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 CORO2BQ9UQ03 480 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 ANGPT4Q9Y264 503 aa5.72□□□□□ -1.49
VPS53-213ENST00000572334 WNK1Q9H4A3 2382 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 LOC100509620A0A075B734 347 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 LOC105371242A0A075B767 164 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 A0A0A6YYJ9 748 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 FXYD1O00168 92 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 PPIHO43447 177 aaKnown RBP5.71□□□□□ -1.5
VPS53-213ENST00000572334 RNF13O43567 381 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 PLPP2O43688 288 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 CDC14BO60729 498 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 RGS9O75916 674 aaPredicted RBP5.71□□□□□ -1.5
VPS53-213ENST00000572334 SLC2A10O95528 541 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 FSHBP01225 129 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 IGHV3-13P01766 116 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 IGHV2-5P01817 119 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 MT-ND1P03886 318 aa5.71□□□□□ -1.5
VPS53-213ENST00000572334 F13BP05160 661 aa5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms