RNA–Protein interactions for RNA: ENST00000570937.1

NUP88-202, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 361 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-202ENST00000570937 SMG1Q96Q15 3661 aaKnown RBP3.34□□□□□ -1.88
NUP88-202ENST00000570937 C15orf38-AP3S2A0A0A6YYH1 394 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 A0A1B0GTH9 108 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 hCG_1809904A0A1W2PP81 198 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 A0A1W2PPE2 198 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 A0A1W2PR64 198 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 FAM166BA8MTA8 275 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 NPIPA2E9PIF3 369 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 NPIPA3F8WFD2 350 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 H3BNH8 94 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 ZNF195O14628 629 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 ARPC2O15144 300 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 UBDO15205 165 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 POLR3GO15318 223 aaPredicted RBP3.33□□□□□ -1.88
NUP88-202ENST00000570937 TSPAN2O60636 221 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 ZNF354AO60765 605 aaPredicted RBP3.33□□□□□ -1.88
NUP88-202ENST00000570937 DIAPH2O60879 1101 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 ICOSLGO75144 302 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 UGT2B11O75310 529 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 TRIM3O75382 744 aaPredicted RBP3.33□□□□□ -1.88
NUP88-202ENST00000570937 KRT33AO76009 404 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 PSMG1O95456 288 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 ANP32DO95626 131 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 ACTL6AO96019 429 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 AK1P00568 194 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 IGHG3P01860 377 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 HMGN2P05204 90 aaKnown RBP3.33□□□□□ -1.88
NUP88-202ENST00000570937 HPNP05981 417 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 SLC2A2P11168 524 aaPredicted RBP3.33□□□□□ -1.88
NUP88-202ENST00000570937 LAMP1P11279 417 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 TBXA2RP21731 343 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 CHI3L1P36222 383 aaPredicted RBP3.33□□□□□ -1.88
NUP88-202ENST00000570937 RFC3P40938 356 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 OPRL1P41146 370 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 FRKP42685 505 aaPredicted RBP3.33□□□□□ -1.88
NUP88-202ENST00000570937 MAGEA8P43361 318 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 RFX3P48380 749 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 DIO3P55073 304 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 CYCSP99999 105 aaKnown RBP3.33□□□□□ -1.88
NUP88-202ENST00000570937 ART3Q13508 389 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 GANABQ14697 944 aaKnown RBP3.33□□□□□ -1.88
NUP88-202ENST00000570937 NNATQ16517 81 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 SNAI3Q3KNW1 292 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 CMPK2Q5EBM0 449 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 ATAD3BQ5T9A4 648 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 PRAMEF20Q5VT98 475 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 TIGD3Q6B0B8 471 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 ANKRD26P1Q6NSI1 321 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 CFAP161Q6P656 301 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 CLEC18BQ6UXF7 455 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 ANGPTL8Q6UXH0 198 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 Q6ZPB1 254 aaPredicted RBP3.33□□□□□ -1.88
NUP88-202ENST00000570937 CHMP1BQ7LBR1 199 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 CAMKMTQ7Z624 323 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 PLCZ1Q86YW0 608 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 MISPQ8IVT2 679 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 SIAH3Q8IW03 269 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 RIMKLAQ8IXN7 391 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 TMEM251Q8N6I4 163 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 KRTCAP2Q8N6L1 136 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 COX18Q8N8Q8 333 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 OR4A15Q8NGL6 344 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 GOT1L1Q8NHS2 421 aaPredicted RBP3.33□□□□□ -1.88
NUP88-202ENST00000570937 PSMA8Q8TAA3 256 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 VANGL1Q8TAA9 524 aaPredicted RBP3.33□□□□□ -1.88
NUP88-202ENST00000570937 NEIL3Q8TAT5 605 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 SFXN5Q8TD22 340 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 FAM222BQ8WU58 562 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 PHF10Q8WUB8 498 aaKnown RBP3.33□□□□□ -1.88
NUP88-202ENST00000570937 GTF3AQ92664 365 aaKnown RBP3.33□□□□□ -1.88
NUP88-202ENST00000570937 TESCQ96BS2 214 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 EFHD2Q96C19 240 aaPredicted RBP3.33□□□□□ -1.88
NUP88-202ENST00000570937 MAGEB18Q96M61 343 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 OR52E6Q96RD3 313 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 PANX1Q96RD7 426 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 SIKE1Q9BRV8 207 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 C1orf50Q9BV19 199 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 OSBPL11Q9BXB4 747 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 KLHL4Q9C0H6 718 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 C20orf27Q9GZN8 174 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 WDR55Q9H6Y2 383 aaPredicted RBP3.33□□□□□ -1.88
NUP88-202ENST00000570937 Q9H8V8 135 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 CHST11Q9NPF2 352 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 MED4Q9NPJ6 270 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 UBQLN4Q9NRR5 601 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 DEPPQ9NTK1 212 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 EXD2Q9NVH0 621 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 FAM120CQ9NX05 1096 aaKnown RBP3.33□□□□□ -1.88
NUP88-202ENST00000570937 THUMPD1Q9NXG2 353 aaKnown RBP3.33□□□□□ -1.88
NUP88-202ENST00000570937 MARCOQ9UEW3 520 aaPredicted RBP3.33□□□□□ -1.88
NUP88-202ENST00000570937 SH3BGRL2Q9UJC5 107 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 DKKL1Q9UK85 242 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 PPP1R3CQ9UQK1 317 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 C15orf41Q9Y2V0 281 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 MEMO1Q9Y316 297 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 MRPS18CQ9Y3D5 142 aaKnown RBP3.33□□□□□ -1.88
NUP88-202ENST00000570937 MAGED1Q9Y5V3 778 aaPredicted RBP3.33□□□□□ -1.88
NUP88-202ENST00000570937 SMAD5-AS1Q9Y6J3 95 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 COL12A1Q99715 3063 aa3.33□□□□□ -1.88
NUP88-202ENST00000570937 GCN1Q92616 2671 aaKnown RBP3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms