RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 KRTAP27-1Q3LI81 207 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 CCDC92Q53HC0 331 aaPredicted RBP8.08□□□□□ -1.12
VPS35-211ENST00000569950 C6orf52Q5T4I8 152 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 NXNL2Q5VZ03 156 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 MEX3BQ6ZN04 569 aaKnown RBP8.08□□□□□ -1.12
VPS35-211ENST00000569950 MDP1Q86V88 176 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 P2RY8Q86VZ1 359 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 RFLNBQ8N5W9 214 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 FAM169BQ8N8A8 192 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 CPEB3Q8NE35 698 aaKnown RBP8.08□□□□□ -1.12
VPS35-211ENST00000569950 OR2T4Q8NH00 348 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 OR52N5Q8NH56 324 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 ST7LQ8TDW4 575 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 SMAP2Q8WU79 429 aaPredicted RBP8.08□□□□□ -1.12
VPS35-211ENST00000569950 HSD17B8Q92506 261 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 ZMYND19Q96E35 227 aaPredicted RBP8.08□□□□□ -1.12
VPS35-211ENST00000569950 MAP6Q96JE9 813 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 HS3ST6Q96QI5 342 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 TEAD3Q99594 435 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 RHNO1Q9BSD3 238 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 WNT5BQ9H1J7 359 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 DNAJC27Q9NZQ0 273 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 PLEKHB1Q9UF11 243 aaPredicted RBP8.08□□□□□ -1.12
VPS35-211ENST00000569950 CYB5R1Q9UHQ9 305 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 GMPPBQ9Y5P6 360 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 ARFGEF3Q5TH69 2177 aa8.08□□□□□ -1.12
VPS35-211ENST00000569950 ANKRD17O75179 2603 aaKnown RBP8.08□□□□□ -1.12
VPS35-211ENST00000569950 CSMD1Q96PZ7 3565 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 LOC100509620A0A075B734 347 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 IGHV1-18A0A0C4DH31 117 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 CIB4A0PJX0 185 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 TUBAL3A6NHL2 446 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 EPXP11678 715 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 NR2C1P13056 603 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 PPP3CBP16298 524 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 NPR2P20594 1047 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 VHLP40337 213 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 ZNF84P51523 738 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 LSM6P62312 80 aaKnown RBP8.07□□□□□ -1.12
VPS35-211ENST00000569950 PSG4Q00888 419 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 TEKQ02763 1124 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 TGFBR3Q03167 851 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 HGFACQ04756 655 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 SPOCK1Q08629 439 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 APOFQ13790 326 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 DAZAP2Q15038 168 aaPredicted RBP8.07□□□□□ -1.12
VPS35-211ENST00000569950 PPA1Q15181 289 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 SGCAQ16586 387 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 SMN1Q16637 294 aaKnown RBP8.07□□□□□ -1.12
VPS35-211ENST00000569950 TEX30Q5JUR7 227 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 SP5Q6BEB4 398 aaPredicted RBP8.07□□□□□ -1.12
VPS35-211ENST00000569950 SLC18B1Q6NT16 456 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 CORO6Q6QEF8 472 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 CFAP77Q6ZQR2 320 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 MEPCEQ7L2J0 689 aaKnown RBP8.07□□□□□ -1.12
VPS35-211ENST00000569950 LRRC18Q8N456 261 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 PAQR4Q8N4S7 273 aaPredicted RBP8.07□□□□□ -1.12
VPS35-211ENST00000569950 DHRSXQ8N5I4 330 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 PROKR2Q8NFJ6 384 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 LILRB1Q8NHL6 650 aaPredicted RBP8.07□□□□□ -1.12
VPS35-211ENST00000569950 TRUB1Q8WWH5 349 aaKnown RBP8.07□□□□□ -1.12
VPS35-211ENST00000569950 CYGBQ8WWM9 190 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 RNF166Q96A37 237 aaPredicted RBP8.07□□□□□ -1.12
VPS35-211ENST00000569950 ZC3HAV1LQ96H79 300 aaKnown RBP8.07□□□□□ -1.12
VPS35-211ENST00000569950 DACH2Q96NX9 599 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 SLC38A2Q96QD8 506 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 ZNF649Q9BS31 505 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 TMEM204Q9BSN7 226 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 C1QTNF6Q9BXI9 259 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 OR2H1Q9GZK4 316 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 OR51V1Q9H2C8 321 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 RERGLQ9H628 205 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 ADGRL4Q9HBW9 690 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 OBP2BQ9NPH6 170 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 RASSF1Q9NS23 344 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 HAO2Q9NYQ3 351 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 MOKQ9UQ07 419 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 AMDHD2Q9Y303 409 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 ORC6Q9Y5N6 252 aa8.07□□□□□ -1.12
VPS35-211ENST00000569950 NAV2Q8IVL1 2488 aa8.06□□□□□ -1.12
VPS35-211ENST00000569950 OR6C6A6NF89 314 aa8.06□□□□□ -1.12
VPS35-211ENST00000569950 RER1O15258 196 aa8.06□□□□□ -1.12
VPS35-211ENST00000569950 SYNGR3O43761 229 aa8.06□□□□□ -1.12
VPS35-211ENST00000569950 PLAUP00749 431 aa8.06□□□□□ -1.12
VPS35-211ENST00000569950 CECR9P0C854 216 aa8.06□□□□□ -1.12
VPS35-211ENST00000569950 PRF1P14222 555 aa8.06□□□□□ -1.12
VPS35-211ENST00000569950 CBR1P16152 277 aa8.06□□□□□ -1.12
VPS35-211ENST00000569950 HTR1FP30939 366 aa8.06□□□□□ -1.12
VPS35-211ENST00000569950 CALCRP30988 508 aa8.06□□□□□ -1.12
VPS35-211ENST00000569950 KIR2DL3P43628 341 aa8.06□□□□□ -1.12
VPS35-211ENST00000569950 SLC15A1P46059 708 aa8.06□□□□□ -1.12
VPS35-211ENST00000569950 HCCSP53701 268 aa8.06□□□□□ -1.12
VPS35-211ENST00000569950 CDC42P60953 191 aa8.06□□□□□ -1.12
VPS35-211ENST00000569950 RAB1AP62820 205 aa8.06□□□□□ -1.12
VPS35-211ENST00000569950 GLO1Q04760 184 aa8.06□□□□□ -1.12
VPS35-211ENST00000569950 PIGFQ07326 219 aa8.06□□□□□ -1.12
VPS35-211ENST00000569950 DOC2BQ14184 412 aa8.06□□□□□ -1.12
VPS35-211ENST00000569950 MSMPQ1L6U9 139 aa8.06□□□□□ -1.12
VPS35-211ENST00000569950 C3orf36Q3SXR2 165 aa8.06□□□□□ -1.12
VPS35-211ENST00000569950 PABPC1L2AQ5JQF8 200 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms