RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 C10orf67Q8IYJ2 551 aa11.24□□□□□ -0.61
CLK3-224ENST00000568605 LNX2Q8N448 690 aa11.24□□□□□ -0.61
CLK3-224ENST00000568605 ATG16L2Q8NAA4 619 aa11.24□□□□□ -0.61
CLK3-224ENST00000568605 OR52E2Q8NGJ4 325 aa11.24□□□□□ -0.61
CLK3-224ENST00000568605 OR2T4Q8NH00 348 aa11.24□□□□□ -0.61
CLK3-224ENST00000568605 FGFBP3Q8TAT2 258 aa11.24□□□□□ -0.61
CLK3-224ENST00000568605 RAB3IPQ96QF0 476 aaPredicted RBP11.24□□□□□ -0.61
CLK3-224ENST00000568605 NIPSNAP1Q9BPW8 284 aa11.24□□□□□ -0.61
CLK3-224ENST00000568605 ZNF416Q9BWM5 594 aa11.24□□□□□ -0.61
CLK3-224ENST00000568605 PLA2G12AQ9BZM1 189 aa11.24□□□□□ -0.61
CLK3-224ENST00000568605 BCL2L14Q9BZR8 327 aa11.24□□□□□ -0.61
CLK3-224ENST00000568605 OR2H1Q9GZK4 316 aa11.24□□□□□ -0.61
CLK3-224ENST00000568605 NUAK2Q9H093 628 aa11.24□□□□□ -0.61
CLK3-224ENST00000568605 PLK3Q9H4B4 646 aa11.24□□□□□ -0.61
CLK3-224ENST00000568605 RPRD1BQ9NQG5 326 aaKnown RBP11.24□□□□□ -0.61
CLK3-224ENST00000568605 ARMC1Q9NVT9 282 aa11.24□□□□□ -0.61
CLK3-224ENST00000568605 COA3Q9Y2R0 106 aaPredicted RBP11.24□□□□□ -0.61
CLK3-224ENST00000568605 CMAHPQ9Y471 501 aa11.24□□□□□ -0.61
CLK3-224ENST00000568605 AP4S1Q9Y587 144 aa11.24□□□□□ -0.61
CLK3-224ENST00000568605 FKBP7Q9Y680 259 aa11.24□□□□□ -0.61
CLK3-224ENST00000568605 DOK2O60496 412 aa11.23□□□□□ -0.61
CLK3-224ENST00000568605 OR4A8P0C604 315 aa11.23□□□□□ -0.61
CLK3-224ENST00000568605 APEX1P27695 318 aaKnown RBP11.23□□□□□ -0.61
CLK3-224ENST00000568605 PCSK6P29122 969 aa11.23□□□□□ -0.61
CLK3-224ENST00000568605 RAD52P43351 418 aa11.23□□□□□ -0.61
CLK3-224ENST00000568605 ADAM8P78325 824 aa11.23□□□□□ -0.61
CLK3-224ENST00000568605 ENDOGQ14249 297 aaKnown RBP11.23□□□□□ -0.61
CLK3-224ENST00000568605 ADIPOQQ15848 244 aa11.23□□□□□ -0.61
CLK3-224ENST00000568605 ATP6AP1Q15904 470 aa11.23□□□□□ -0.61
CLK3-224ENST00000568605 SLC36A3Q495N2 470 aa11.23□□□□□ -0.61
CLK3-224ENST00000568605 SLC35F1Q5T1Q4 408 aa11.23□□□□□ -0.61
CLK3-224ENST00000568605 SLC27A4Q6P1M0 643 aa11.23□□□□□ -0.61
CLK3-224ENST00000568605 ARL9Q6T311 187 aa11.23□□□□□ -0.61
CLK3-224ENST00000568605 C1orf174Q8IYL3 243 aa11.23□□□□□ -0.61
CLK3-224ENST00000568605 OR8D4Q8NGM9 314 aa11.23□□□□□ -0.61
CLK3-224ENST00000568605 OR5K1Q8NHB7 308 aa11.23□□□□□ -0.61
CLK3-224ENST00000568605 SLCO4A1Q96BD0 722 aa11.23□□□□□ -0.61
CLK3-224ENST00000568605 DUS3LQ96G46 650 aaKnown RBP11.23□□□□□ -0.61
CLK3-224ENST00000568605 EMC7Q9NPA0 242 aa11.23□□□□□ -0.61
CLK3-224ENST00000568605 EIF3KQ9UBQ5 218 aaKnown RBP11.23□□□□□ -0.61
CLK3-224ENST00000568605 ENOPH1Q9UHY7 261 aa11.23□□□□□ -0.61
CLK3-224ENST00000568605 IGLV1-36A0A0B4J1U3 117 aa11.22□□□□□ -0.61
CLK3-224ENST00000568605 SGCEO43556 437 aa11.22□□□□□ -0.61
CLK3-224ENST00000568605 CD8AP01732 235 aa11.22□□□□□ -0.61
CLK3-224ENST00000568605 HLA-DQA2P01906 255 aa11.22□□□□□ -0.61
CLK3-224ENST00000568605 COX5BP10606 129 aa11.22□□□□□ -0.61
CLK3-224ENST00000568605 OSMP13725 252 aa11.22□□□□□ -0.61
CLK3-224ENST00000568605 ZNF23P17027 643 aa11.22□□□□□ -0.61
CLK3-224ENST00000568605 PAICSP22234 425 aaKnown RBP11.22□□□□□ -0.61
CLK3-224ENST00000568605 CCNOP22674 350 aa11.22□□□□□ -0.61
CLK3-224ENST00000568605 GRK5P34947 590 aa11.22□□□□□ -0.61
CLK3-224ENST00000568605 THBS4P35443 961 aa11.22□□□□□ -0.61
CLK3-224ENST00000568605 HTR5AP47898 357 aa11.22□□□□□ -0.61
CLK3-224ENST00000568605 PPOXP50336 477 aa11.22□□□□□ -0.61
CLK3-224ENST00000568605 NUDT6P53370 316 aa11.22□□□□□ -0.61
CLK3-224ENST00000568605 SELENOVP59797 346 aa11.22□□□□□ -0.61
CLK3-224ENST00000568605 MAP1AP78559 2803 aaPredicted RBP11.22□□□□□ -0.61
CLK3-224ENST00000568605 PSG4Q00888 419 aa11.22□□□□□ -0.61
CLK3-224ENST00000568605 HGFACQ04756 655 aa11.22□□□□□ -0.61
CLK3-224ENST00000568605 CCNIQ14094 377 aa11.22□□□□□ -0.61
CLK3-224ENST00000568605 RAB35Q15286 201 aa11.22□□□□□ -0.61
CLK3-224ENST00000568605 KCNMB1Q16558 191 aa11.22□□□□□ -0.61
CLK3-224ENST00000568605 RGS7BPQ6MZT1 257 aaPredicted RBP11.22□□□□□ -0.61
CLK3-224ENST00000568605 ZBTB46Q86UZ6 589 aa11.22□□□□□ -0.61
CLK3-224ENST00000568605 HIPK1Q86Z02 1210 aa11.22□□□□□ -0.61
CLK3-224ENST00000568605 SVOPLQ8N434 492 aa11.22□□□□□ -0.61
CLK3-224ENST00000568605 PROKR2Q8NFJ6 384 aa11.22□□□□□ -0.61
CLK3-224ENST00000568605 AKR7LQ8NHP1 331 aa11.22□□□□□ -0.61
CLK3-224ENST00000568605 AKAP9Q99996 3911 aa11.22□□□□□ -0.61
CLK3-224ENST00000568605 PRRG3Q9BZD7 231 aa11.22□□□□□ -0.61
CLK3-224ENST00000568605 FN3KQ9H479 309 aa11.22□□□□□ -0.61
CLK3-224ENST00000568605 SRA1Q9HD15 236 aaKnown RBP11.22□□□□□ -0.61
CLK3-224ENST00000568605 DYNLRB1Q9NP97 96 aa11.22□□□□□ -0.61
CLK3-224ENST00000568605 PLEK2Q9NYT0 353 aa11.22□□□□□ -0.61
CLK3-224ENST00000568605 ASH2LQ9UBL3 628 aa11.22□□□□□ -0.61
CLK3-224ENST00000568605 ATPIF1Q9UII2 106 aa11.22□□□□□ -0.61
CLK3-224ENST00000568605 GPR160Q9UJ42 338 aa11.22□□□□□ -0.61
CLK3-224ENST00000568605 KCNG2Q9UJ96 466 aa11.22□□□□□ -0.61
CLK3-224ENST00000568605 B9D1Q9UPM9 204 aa11.22□□□□□ -0.61
CLK3-224ENST00000568605 OR6C68A6NDL8 312 aa11.21□□□□□ -0.61
CLK3-224ENST00000568605 G3V2T6 193 aa11.21□□□□□ -0.61
CLK3-224ENST00000568605 M0R233 179 aa11.21□□□□□ -0.61
CLK3-224ENST00000568605 LCKP06239 509 aa11.21□□□□□ -0.61
CLK3-224ENST00000568605 FAM157BP0CG42 384 aa11.21□□□□□ -0.61
CLK3-224ENST00000568605 GAAP10253 952 aa11.21□□□□□ -0.61
CLK3-224ENST00000568605 ZNF823P16415 610 aa11.21□□□□□ -0.61
CLK3-224ENST00000568605 EVX1P49640 407 aa11.21□□□□□ -0.61
CLK3-224ENST00000568605 BLVRAP53004 296 aa11.21□□□□□ -0.61
CLK3-224ENST00000568605 ACTR3P61158 418 aa11.21□□□□□ -0.61
CLK3-224ENST00000568605 SWI5Q1ZZU3 235 aa11.21□□□□□ -0.61
CLK3-224ENST00000568605 ZFP1Q6P2D0 407 aa11.21□□□□□ -0.61
CLK3-224ENST00000568605 TMEM179BQ7Z7N9 219 aa11.21□□□□□ -0.61
CLK3-224ENST00000568605 ZDHHC13Q8IUH4 622 aa11.21□□□□□ -0.61
CLK3-224ENST00000568605 OR6V1Q8N148 313 aa11.21□□□□□ -0.61
CLK3-224ENST00000568605 NPEPL1Q8NDH3 523 aa11.21□□□□□ -0.61
CLK3-224ENST00000568605 CPEB3Q8NE35 698 aaKnown RBP11.21□□□□□ -0.61
CLK3-224ENST00000568605 WFDC11Q8NEX6 87 aa11.21□□□□□ -0.61
CLK3-224ENST00000568605 GJC3Q8NFK1 279 aa11.21□□□□□ -0.61
CLK3-224ENST00000568605 SLC26A10Q8NG04 563 aa11.21□□□□□ -0.61
CLK3-224ENST00000568605 OR4Q3Q8NH05 313 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms