RNA–Protein interactions for RNA: ENST00000568561.5

NME3-211, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 1 (best)

Gene NME3, Length 813 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-211ENST00000568561 LCN6P62502 163 aa13.1□□□□□ -0.31
NME3-211ENST00000568561 TNFAIP6P98066 277 aaPredicted RBP13.1□□□□□ -0.31
NME3-211ENST00000568561 SLC3A1Q07837 685 aa13.1□□□□□ -0.31
NME3-211ENST00000568561 ENDOGQ14249 297 aaKnown RBP13.1□□□□□ -0.31
NME3-211ENST00000568561 ARMCX4Q5H9R4 360 aa13.1□□□□□ -0.31
NME3-211ENST00000568561 KLF17Q5JT82 389 aaPredicted RBP13.1□□□□□ -0.31
NME3-211ENST00000568561 NANOGP8Q6NSW7 305 aa13.1□□□□□ -0.31
NME3-211ENST00000568561 TAF15Q92804 592 aaKnown RBP eCLIP13.1□□□□□ -0.31
NME3-211ENST00000568561 ATP6V1G3Q96LB4 118 aa13.1□□□□□ -0.31
NME3-211ENST00000568561 EMC7Q9NPA0 242 aa13.1□□□□□ -0.31
NME3-211ENST00000568561 CYSLTR2Q9NS75 346 aa13.1□□□□□ -0.31
NME3-211ENST00000568561 STX18Q9P2W9 335 aaKnown RBP13.1□□□□□ -0.31
NME3-211ENST00000568561 EGFL7Q9UHF1 273 aa13.1□□□□□ -0.31
NME3-211ENST00000568561 PURGQ9UJV8 347 aaKnown RBP13.1□□□□□ -0.31
NME3-211ENST00000568561 MED31Q9Y3C7 131 aa13.1□□□□□ -0.31
NME3-211ENST00000568561 TRAPPC2LH3BP13 241 aa13.09□□□□□ -0.31
NME3-211ENST00000568561 FXYD1O00168 92 aa13.09□□□□□ -0.31
NME3-211ENST00000568561 FOXH1O75593 365 aa13.09□□□□□ -0.31
NME3-211ENST00000568561 SCG5P05408 212 aa13.09□□□□□ -0.31
NME3-211ENST00000568561 CD55P08174 381 aa13.09□□□□□ -0.31
NME3-211ENST00000568561 VIMP08670 466 aaKnown RBP13.09□□□□□ -0.31
NME3-211ENST00000568561 CST2P09228 141 aa13.09□□□□□ -0.31
NME3-211ENST00000568561 HKR1P10072 659 aa13.09□□□□□ -0.31
NME3-211ENST00000568561 IFI30P13284 250 aa13.09□□□□□ -0.31
NME3-211ENST00000568561 RPL27P61353 136 aaKnown RBP13.09□□□□□ -0.31
NME3-211ENST00000568561 PSG7Q13046 419 aa13.09□□□□□ -0.31
NME3-211ENST00000568561 LRRC23Q53EV4 343 aaPredicted RBP13.09□□□□□ -0.31
NME3-211ENST00000568561 MTX3Q5HYI7 312 aa13.09□□□□□ -0.31
NME3-211ENST00000568561 OTPQ5XKR4 325 aa13.09□□□□□ -0.31
NME3-211ENST00000568561 UNQ6126/PRO20091Q6UXV3 157 aa13.09□□□□□ -0.31
NME3-211ENST00000568561 RBMS3Q6XE24 437 aaKnown RBP13.09□□□□□ -0.31
NME3-211ENST00000568561 CALHM3Q86XJ0 350 aa13.09□□□□□ -0.31
NME3-211ENST00000568561 TREML1Q86YW5 311 aa13.09□□□□□ -0.31
NME3-211ENST00000568561 LIPHQ8WWY8 451 aa13.09□□□□□ -0.31
NME3-211ENST00000568561 C4orf45Q96LM5 186 aa13.09□□□□□ -0.31
NME3-211ENST00000568561 C1orf147Q96MC9 270 aaPredicted RBP13.09□□□□□ -0.31
NME3-211ENST00000568561 ALG12Q9BV10 488 aa13.09□□□□□ -0.31
NME3-211ENST00000568561 NTN4Q9HB63 628 aa13.09□□□□□ -0.31
NME3-211ENST00000568561 TMEM106BQ9NUM4 274 aa13.09□□□□□ -0.31
NME3-211ENST00000568561 KLHL21Q9UJP4 597 aa13.09□□□□□ -0.31
NME3-211ENST00000568561 BAG5Q9UL15 447 aa13.09□□□□□ -0.31
NME3-211ENST00000568561 ZDHHC8Q9ULC8 765 aa13.09□□□□□ -0.31
NME3-211ENST00000568561 HIF3AQ9Y2N7 669 aa13.09□□□□□ -0.31
NME3-211ENST00000568561 TIMM10BQ9Y5J6 103 aa13.09□□□□□ -0.31
NME3-211ENST00000568561 IGHV3OR16-10A0A075B7F0 116 aa13.08□□□□□ -0.32
NME3-211ENST00000568561 TRAV27A0A087WT01 109 aa13.08□□□□□ -0.32
NME3-211ENST00000568561 A0A0G2JND7 137 aa13.08□□□□□ -0.32
NME3-211ENST00000568561 NPIPB13A6NJU9 1138 aa13.08□□□□□ -0.32
NME3-211ENST00000568561 NPIPB4C9JG80 1138 aa13.08□□□□□ -0.32
NME3-211ENST00000568561 ABHD16AO95870 558 aa13.08□□□□□ -0.32
NME3-211ENST00000568561 IGHMP01871 453 aa13.08□□□□□ -0.32
NME3-211ENST00000568561 NR2C1P13056 603 aa13.08□□□□□ -0.32
NME3-211ENST00000568561 ERFP50548 548 aa13.08□□□□□ -0.32
NME3-211ENST00000568561 CTXN1P60606 82 aa13.08□□□□□ -0.32
NME3-211ENST00000568561 ZNF154Q13106 437 aa13.08□□□□□ -0.32
NME3-211ENST00000568561 ZMYND11Q15326 602 aa13.08□□□□□ -0.32
NME3-211ENST00000568561 ZMAT1Q5H9K5 638 aa13.08□□□□□ -0.32
NME3-211ENST00000568561 PRR31Q5SQ13 230 aa13.08□□□□□ -0.32
NME3-211ENST00000568561 Q6ZR03 302 aa13.08□□□□□ -0.32
NME3-211ENST00000568561 ALDH16A1Q8IZ83 802 aa13.08□□□□□ -0.32
NME3-211ENST00000568561 OR2Z1Q8NG97 314 aa13.08□□□□□ -0.32
NME3-211ENST00000568561 OR51A7Q8NH64 312 aa13.08□□□□□ -0.32
NME3-211ENST00000568561 LRRC58Q96CX6 371 aa13.08□□□□□ -0.32
NME3-211ENST00000568561 BPIFA2Q96DR5 249 aa13.08□□□□□ -0.32
NME3-211ENST00000568561 ZNF48Q96MX3 618 aaPredicted RBP13.08□□□□□ -0.32
NME3-211ENST00000568561 RBP7Q96R05 134 aa13.08□□□□□ -0.32
NME3-211ENST00000568561 ZNF747Q9BV97 191 aa13.08□□□□□ -0.32
NME3-211ENST00000568561 INTS9Q9NV88 658 aaKnown RBP13.08□□□□□ -0.32
NME3-211ENST00000568561 RHCGQ9UBD6 479 aa13.08□□□□□ -0.32
NME3-211ENST00000568561 SOX21Q9Y651 276 aaPredicted RBP13.08□□□□□ -0.32
NME3-211ENST00000568561 AUP1Q9Y679 476 aa13.08□□□□□ -0.32
NME3-211ENST00000568561 GMNCA6NCL1 334 aa13.07□□□□□ -0.32
NME3-211ENST00000568561 ICMTO60725 284 aa13.07□□□□□ -0.32
NME3-211ENST00000568561 IGF2P01344 180 aa13.07□□□□□ -0.32
NME3-211ENST00000568561 MSR1P21757 451 aa13.07□□□□□ -0.32
NME3-211ENST00000568561 PRTN3P24158 256 aa13.07□□□□□ -0.32
NME3-211ENST00000568561 LIPAP38571 399 aa13.07□□□□□ -0.32
NME3-211ENST00000568561 YAP1P46937 504 aaKnown RBP13.07□□□□□ -0.32
NME3-211ENST00000568561 ARHGDIAP52565 204 aa13.07□□□□□ -0.32
NME3-211ENST00000568561 CDK5R2Q13319 367 aa13.07□□□□□ -0.32
NME3-211ENST00000568561 CYBRD1Q53TN4 286 aa13.07□□□□□ -0.32
NME3-211ENST00000568561 FOXL2NBQ6ZUU3 175 aa13.07□□□□□ -0.32
NME3-211ENST00000568561 DOK3Q7L591 496 aa13.07□□□□□ -0.32
NME3-211ENST00000568561 JAZF1Q86VZ6 243 aa13.07□□□□□ -0.32
NME3-211ENST00000568561 SPICQ8N5J4 248 aa13.07□□□□□ -0.32
NME3-211ENST00000568561 LRRC75AQ8NAA5 344 aa13.07□□□□□ -0.32
NME3-211ENST00000568561 OR13C2Q8NGS9 318 aa13.07□□□□□ -0.32
NME3-211ENST00000568561 TSPEARQ8WU66 669 aa13.07□□□□□ -0.32
NME3-211ENST00000568561 ITLN1Q8WWA0 313 aa13.07□□□□□ -0.32
NME3-211ENST00000568561 SLC7A6Q92536 515 aa13.07□□□□□ -0.32
NME3-211ENST00000568561 POP5Q969H6 163 aaKnown RBP13.07□□□□□ -0.32
NME3-211ENST00000568561 TPD52L3Q96J77 140 aa13.07□□□□□ -0.32
NME3-211ENST00000568561 DIRC2Q96SL1 478 aa13.07□□□□□ -0.32
NME3-211ENST00000568561 ECSITQ9BQ95 431 aa13.07□□□□□ -0.32
NME3-211ENST00000568561 POLR2J2Q9GZM3 115 aaKnown RBP13.07□□□□□ -0.32
NME3-211ENST00000568561 POLR2J3Q9H1A7 115 aaKnown RBP13.07□□□□□ -0.32
NME3-211ENST00000568561 ELOVL3Q9HB03 270 aa13.07□□□□□ -0.32
NME3-211ENST00000568561 PATZ1Q9HBE1 687 aaKnown RBP13.07□□□□□ -0.32
NME3-211ENST00000568561 CGGBP1Q9UFW8 167 aaPredicted RBP13.07□□□□□ -0.32
NME3-211ENST00000568561 NUP50Q9UKX7 468 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms