RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 VNN3Q9NY84 501 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 MYEF2Q9P2K5 600 aaKnown RBP12.92□□□□□ -0.34
VPS39-210ENST00000568357 COA3Q9Y2R0 106 aaPredicted RBP12.92□□□□□ -0.34
VPS39-210ENST00000568357 TIMM10BQ9Y5J6 103 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 ATRQ13535 2644 aa12.92□□□□□ -0.34
VPS39-210ENST00000568357 NBEAL1Q6ZS30 2694 aa12.91□□□□□ -0.34
VPS39-210ENST00000568357 ARPC3O15145 178 aa12.91□□□□□ -0.34
VPS39-210ENST00000568357 GYG2O15488 501 aa12.91□□□□□ -0.34
VPS39-210ENST00000568357 APEHP13798 732 aaKnown RBP12.91□□□□□ -0.34
VPS39-210ENST00000568357 CCNOP22674 350 aa12.91□□□□□ -0.34
VPS39-210ENST00000568357 SLC6A6P31641 620 aa12.91□□□□□ -0.34
VPS39-210ENST00000568357 APLNRP35414 380 aa12.91□□□□□ -0.34
VPS39-210ENST00000568357 TRAP1Q12931 704 aaKnown RBP12.91□□□□□ -0.34
VPS39-210ENST00000568357 FAM98BQ52LJ0 330 aaKnown RBP12.91□□□□□ -0.34
VPS39-210ENST00000568357 ZNF774Q6NX45 483 aa12.91□□□□□ -0.34
VPS39-210ENST00000568357 LRGUKQ96M69 825 aa12.91□□□□□ -0.34
VPS39-210ENST00000568357 TSSK2Q96PF2 358 aa12.91□□□□□ -0.34
VPS39-210ENST00000568357 IFT27Q9BW83 186 aa12.91□□□□□ -0.34
VPS39-210ENST00000568357 RAB1BQ9H0U4 201 aa12.91□□□□□ -0.34
VPS39-210ENST00000568357 LRMDAQ9H2I8 198 aa12.91□□□□□ -0.34
VPS39-210ENST00000568357 REV1Q9UBZ9 1251 aa12.91□□□□□ -0.34
VPS39-210ENST00000568357 DUSP13Q9UII6 198 aa12.91□□□□□ -0.34
VPS39-210ENST00000568357 FBXO9Q9UK97 447 aaPredicted RBP12.91□□□□□ -0.34
VPS39-210ENST00000568357 CUBNO60494 3623 aa12.9□□□□□ -0.34
VPS39-210ENST00000568357 C5orf49A4QMS7 147 aa12.9□□□□□ -0.34
VPS39-210ENST00000568357 C12orf71A8MTZ7 269 aa12.9□□□□□ -0.34
VPS39-210ENST00000568357 DCTN6O00399 190 aa12.9□□□□□ -0.34
VPS39-210ENST00000568357 SYNGR3O43761 229 aa12.9□□□□□ -0.34
VPS39-210ENST00000568357 KHDRBS3O75525 346 aaKnown RBP12.9□□□□□ -0.34
VPS39-210ENST00000568357 GPANK1O95872 356 aa12.9□□□□□ -0.34
VPS39-210ENST00000568357 CLPTM1O96005 669 aa12.9□□□□□ -0.34
VPS39-210ENST00000568357 LCKP06239 509 aa12.9□□□□□ -0.34
VPS39-210ENST00000568357 HIST1H1CP16403 213 aaKnown RBP12.9□□□□□ -0.34
VPS39-210ENST00000568357 WNT5AP41221 380 aa12.9□□□□□ -0.34
VPS39-210ENST00000568357 RAD52P43351 418 aa12.9□□□□□ -0.34
VPS39-210ENST00000568357 ALDH3B1P43353 468 aa12.9□□□□□ -0.34
VPS39-210ENST00000568357 PCBD1P61457 104 aa12.9□□□□□ -0.34
VPS39-210ENST00000568357 RPS23P62266 143 aaKnown RBP12.9□□□□□ -0.34
VPS39-210ENST00000568357 MAD2L1BPQ15013 274 aaPredicted RBP12.9□□□□□ -0.34
VPS39-210ENST00000568357 OR2T5Q6IEZ7 315 aa12.9□□□□□ -0.34
VPS39-210ENST00000568357 RGS7BPQ6MZT1 257 aaPredicted RBP12.9□□□□□ -0.34
VPS39-210ENST00000568357 ZNF620Q6ZNG0 422 aa12.9□□□□□ -0.34
VPS39-210ENST00000568357 SYT9Q86SS6 491 aa12.9□□□□□ -0.34
VPS39-210ENST00000568357 ADCK1Q86TW2 530 aa12.9□□□□□ -0.34
VPS39-210ENST00000568357 GLB1L2Q8IW92 636 aa12.9□□□□□ -0.34
VPS39-210ENST00000568357 ADGRG5Q8IZF4 528 aa12.9□□□□□ -0.34
VPS39-210ENST00000568357 OR2T29Q8NH02 315 aa12.9□□□□□ -0.34
VPS39-210ENST00000568357 OR4K13Q8NH42 304 aa12.9□□□□□ -0.34
VPS39-210ENST00000568357 NMNAT3Q96T66 252 aa12.9□□□□□ -0.34
VPS39-210ENST00000568357 CHID1Q9BWS9 393 aa12.9□□□□□ -0.34
VPS39-210ENST00000568357 EGLN3Q9H6Z9 239 aa12.9□□□□□ -0.34
VPS39-210ENST00000568357 DYNLRB1Q9NP97 96 aa12.9□□□□□ -0.34
VPS39-210ENST00000568357 FKBP7Q9Y680 259 aa12.9□□□□□ -0.34
VPS39-210ENST00000568357 U3KQV3 271 aa12.9□□□□□ -0.34
VPS39-210ENST00000568357 ARFGEF3Q5TH69 2177 aa12.89□□□□□ -0.35
VPS39-210ENST00000568357 CCNB2O95067 398 aa12.89□□□□□ -0.35
VPS39-210ENST00000568357 RAP2AP10114 183 aa12.89□□□□□ -0.35
VPS39-210ENST00000568357 ZNF250P15622 560 aa12.89□□□□□ -0.35
VPS39-210ENST00000568357 GDI2P50395 445 aaKnown RBP12.89□□□□□ -0.35
VPS39-210ENST00000568357 PDLIM4P50479 330 aa12.89□□□□□ -0.35
VPS39-210ENST00000568357 CLEC12AQ5QGZ9 265 aa12.89□□□□□ -0.35
VPS39-210ENST00000568357 LEG1Q6P5S2 330 aa12.89□□□□□ -0.35
VPS39-210ENST00000568357 PHC2Q8IXK0 858 aa12.89□□□□□ -0.35
VPS39-210ENST00000568357 ALDH16A1Q8IZ83 802 aa12.89□□□□□ -0.35
VPS39-210ENST00000568357 ZNF101Q8IZC7 436 aa12.89□□□□□ -0.35
VPS39-210ENST00000568357 OR6V1Q8N148 313 aa12.89□□□□□ -0.35
VPS39-210ENST00000568357 LINC00471Q8N535 108 aa12.89□□□□□ -0.35
VPS39-210ENST00000568357 CANT1Q8WVQ1 401 aa12.89□□□□□ -0.35
VPS39-210ENST00000568357 NEU4Q8WWR8 484 aaPredicted RBP12.89□□□□□ -0.35
VPS39-210ENST00000568357 POP5Q969H6 163 aaKnown RBP12.89□□□□□ -0.35
VPS39-210ENST00000568357 BCL2L14Q9BZR8 327 aa12.89□□□□□ -0.35
VPS39-210ENST00000568357 TPK1Q9H3S4 243 aa12.89□□□□□ -0.35
VPS39-210ENST00000568357 SRA1Q9HD15 236 aaKnown RBP12.89□□□□□ -0.35
VPS39-210ENST00000568357 B9D1Q9UPM9 204 aa12.89□□□□□ -0.35
VPS39-210ENST00000568357 SAMHD1Q9Y3Z3 626 aaKnown RBP12.89□□□□□ -0.35
VPS39-210ENST00000568357 ZANQ9Y493 2812 aa12.88□□□□□ -0.35
VPS39-210ENST00000568357 IGLV1-36A0A0B4J1U3 117 aa12.88□□□□□ -0.35
VPS39-210ENST00000568357 OR6C68A6NDL8 312 aa12.88□□□□□ -0.35
VPS39-210ENST00000568357 AQP12BA6NM10 295 aa12.88□□□□□ -0.35
VPS39-210ENST00000568357 VWC2LB2RUY7 222 aa12.88□□□□□ -0.35
VPS39-210ENST00000568357 M0R233 179 aa12.88□□□□□ -0.35
VPS39-210ENST00000568357 NGFP01138 241 aa12.88□□□□□ -0.35
VPS39-210ENST00000568357 CSF3P09919 207 aa12.88□□□□□ -0.35
VPS39-210ENST00000568357 NAT2P11245 290 aa12.88□□□□□ -0.35
VPS39-210ENST00000568357 DAOP14920 347 aa12.88□□□□□ -0.35
VPS39-210ENST00000568357 SLC25A16P16260 332 aa12.88□□□□□ -0.35
VPS39-210ENST00000568357 PPP2R2BQ00005 443 aa12.88□□□□□ -0.35
VPS39-210ENST00000568357 LOXL1Q08397 574 aaPredicted RBP12.88□□□□□ -0.35
VPS39-210ENST00000568357 BNIP1Q12981 228 aa12.88□□□□□ -0.35
VPS39-210ENST00000568357 KCNMB1Q16558 191 aa12.88□□□□□ -0.35
VPS39-210ENST00000568357 CARTPTQ16568 116 aa12.88□□□□□ -0.35
VPS39-210ENST00000568357 MICAQ29983 383 aa12.88□□□□□ -0.35
VPS39-210ENST00000568357 ALKBH6Q3KRA9 238 aa12.88□□□□□ -0.35
VPS39-210ENST00000568357 DNAL1Q4LDG9 190 aa12.88□□□□□ -0.35
VPS39-210ENST00000568357 SLC35F1Q5T1Q4 408 aa12.88□□□□□ -0.35
VPS39-210ENST00000568357 AQP12AQ8IXF9 295 aa12.88□□□□□ -0.35
VPS39-210ENST00000568357 AQP11Q8NBQ7 271 aa12.88□□□□□ -0.35
VPS39-210ENST00000568357 ICA1LQ8NDH6 482 aa12.88□□□□□ -0.35
VPS39-210ENST00000568357 OR1J1Q8NGS3 322 aa12.88□□□□□ -0.35
VPS39-210ENST00000568357 SYNPRQ8TBG9 265 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms