RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 CCL8P80075 99 aa17.73■□□□□ 0.43
CLN3-219ENST00000565778 ENDOGQ14249 297 aaKnown RBP17.73■□□□□ 0.43
CLN3-219ENST00000565778 SAMD4BQ5PRF9 694 aaKnown RBP17.73■□□□□ 0.43
CLN3-219ENST00000565778 SPATA46Q5T0L3 261 aa17.73■□□□□ 0.43
CLN3-219ENST00000565778 ZNF774Q6NX45 483 aa17.73■□□□□ 0.43
CLN3-219ENST00000565778 PIGWQ7Z7B1 504 aa17.73■□□□□ 0.43
CLN3-219ENST00000565778 SYT9Q86SS6 491 aa17.73■□□□□ 0.43
CLN3-219ENST00000565778 PGAM4Q8N0Y7 254 aa17.73■□□□□ 0.43
CLN3-219ENST00000565778 ZNF416Q9BWM5 594 aa17.73■□□□□ 0.43
CLN3-219ENST00000565778 POLE4Q9NR33 117 aa17.73■□□□□ 0.43
CLN3-219ENST00000565778 ARL8BQ9NVJ2 186 aa17.73■□□□□ 0.43
CLN3-219ENST00000565778 MAGEL2Q9UJ55 1249 aa17.73■□□□□ 0.43
CLN3-219ENST00000565778 TEX13CA0A0J9YWL9 993 aa17.72■□□□□ 0.43
CLN3-219ENST00000565778 PRSS37A4D1T9 235 aa17.72■□□□□ 0.43
CLN3-219ENST00000565778 UNC119BA6NIH7 251 aa17.72■□□□□ 0.43
CLN3-219ENST00000565778 IGHV3-13P01766 116 aa17.72■□□□□ 0.43
CLN3-219ENST00000565778 HSD17B1P14061 328 aa17.72■□□□□ 0.43
CLN3-219ENST00000565778 WNT5AP41221 380 aa17.72■□□□□ 0.43
CLN3-219ENST00000565778 LIMS1P48059 325 aa17.72■□□□□ 0.43
CLN3-219ENST00000565778 MXRA7P84157 204 aa17.72■□□□□ 0.43
CLN3-219ENST00000565778 GLO1Q04760 184 aa17.72■□□□□ 0.43
CLN3-219ENST00000565778 CCNIQ14094 377 aa17.72■□□□□ 0.43
CLN3-219ENST00000565778 SEC23BQ15437 767 aa17.72■□□□□ 0.43
CLN3-219ENST00000565778 PCGF3Q3KNV8 242 aa17.72■□□□□ 0.43
CLN3-219ENST00000565778 MESTQ5EB52 335 aa17.72■□□□□ 0.43
CLN3-219ENST00000565778 FAM120AOSQ5T036 256 aa17.72■□□□□ 0.43
CLN3-219ENST00000565778 GPR139Q6DWJ6 353 aa17.72■□□□□ 0.43
CLN3-219ENST00000565778 UGT2A3Q6UWM9 527 aa17.72■□□□□ 0.43
CLN3-219ENST00000565778 IL17RELQ6ZVW7 336 aa17.72■□□□□ 0.43
CLN3-219ENST00000565778 FAM122BQ7Z309 247 aa17.72■□□□□ 0.43
CLN3-219ENST00000565778 ZNF101Q8IZC7 436 aa17.72■□□□□ 0.43
CLN3-219ENST00000565778 YIPF5Q969M3 257 aa17.72■□□□□ 0.43
CLN3-219ENST00000565778 MCUR1Q96AQ8 359 aa17.72■□□□□ 0.43
CLN3-219ENST00000565778 RASD2Q96D21 266 aa17.72■□□□□ 0.43
CLN3-219ENST00000565778 RSRC1Q96IZ7 334 aaKnown RBP17.72■□□□□ 0.43
CLN3-219ENST00000565778 NSMCE2Q96MF7 247 aa17.72■□□□□ 0.43
CLN3-219ENST00000565778 EMC7Q9NPA0 242 aa17.72■□□□□ 0.43
CLN3-219ENST00000565778 NRIP3Q9NQ35 241 aa17.72■□□□□ 0.43
CLN3-219ENST00000565778 ZNF275Q9NSD4 429 aaPredicted RBP17.72■□□□□ 0.43
CLN3-219ENST00000565778 DECR2Q9NUI1 292 aa17.72■□□□□ 0.43
CLN3-219ENST00000565778 CD300AQ9UGN4 299 aa17.72■□□□□ 0.43
CLN3-219ENST00000565778 IER3IP1Q9Y5U9 82 aa17.72■□□□□ 0.43
CLN3-219ENST00000565778 RTTNQ86VV8 2226 aa17.71■□□□□ 0.43
CLN3-219ENST00000565778 PPIHO43447 177 aaKnown RBP17.71■□□□□ 0.43
CLN3-219ENST00000565778 SLC16A7O60669 478 aa17.71■□□□□ 0.43
CLN3-219ENST00000565778 CDC14BO60729 498 aa17.71■□□□□ 0.43
CLN3-219ENST00000565778 DCTN3O75935 186 aa17.71■□□□□ 0.43
CLN3-219ENST00000565778 NCR1O76036 304 aa17.71■□□□□ 0.43
CLN3-219ENST00000565778 GADD45GO95257 159 aa17.71■□□□□ 0.43
CLN3-219ENST00000565778 HNF1AP20823 631 aa17.71■□□□□ 0.43
CLN3-219ENST00000565778 SDHAP31040 664 aa17.71■□□□□ 0.43
CLN3-219ENST00000565778 MRPS11P82912 194 aaKnown RBP17.71■□□□□ 0.43
CLN3-219ENST00000565778 KRR1Q13601 381 aaKnown RBP17.71■□□□□ 0.43
CLN3-219ENST00000565778 ARL9Q6T311 187 aa17.71■□□□□ 0.43
CLN3-219ENST00000565778 CXXC5Q7LFL8 322 aaKnown RBP17.71■□□□□ 0.43
CLN3-219ENST00000565778 C1orf174Q8IYL3 243 aa17.71■□□□□ 0.43
CLN3-219ENST00000565778 LINC01356Q8N9X3 169 aa17.71■□□□□ 0.43
CLN3-219ENST00000565778 ABHD4Q8TB40 342 aa17.71■□□□□ 0.43
CLN3-219ENST00000565778 SLC25A40Q8TBP6 338 aa17.71■□□□□ 0.43
CLN3-219ENST00000565778 MARS2Q96GW9 593 aaKnown RBP17.71■□□□□ 0.43
CLN3-219ENST00000565778 C4orf45Q96LM5 186 aa17.71■□□□□ 0.43
CLN3-219ENST00000565778 WACQ9BTA9 647 aa17.71■□□□□ 0.43
CLN3-219ENST00000565778 OR2J1Q9GZK6 312 aa17.71■□□□□ 0.43
CLN3-219ENST00000565778 NARFLQ9H6Q4 476 aa17.71■□□□□ 0.43
CLN3-219ENST00000565778 ELOVL3Q9HB03 270 aa17.71■□□□□ 0.43
CLN3-219ENST00000565778 NKIRAS2Q9NYR9 191 aa17.71■□□□□ 0.43
CLN3-219ENST00000565778 SOCS2O14508 198 aa17.7■□□□□ 0.42
CLN3-219ENST00000565778 KHDRBS3O75525 346 aaKnown RBP17.7■□□□□ 0.42
CLN3-219ENST00000565778 NGFP01138 241 aa17.7■□□□□ 0.42
CLN3-219ENST00000565778 SRD5A1P18405 259 aa17.7■□□□□ 0.42
CLN3-219ENST00000565778 MPV17P39210 176 aa17.7■□□□□ 0.42
CLN3-219ENST00000565778 ZNF81P51508 661 aa17.7■□□□□ 0.42
CLN3-219ENST00000565778 RPS6KA3P51812 740 aa17.7■□□□□ 0.42
CLN3-219ENST00000565778 ARHGDIAP52565 204 aa17.7■□□□□ 0.42
CLN3-219ENST00000565778 PPP1CBP62140 327 aa17.7■□□□□ 0.42
CLN3-219ENST00000565778 SPIBQ01892 262 aa17.7■□□□□ 0.42
CLN3-219ENST00000565778 TSTQ16762 297 aaKnown RBP17.7■□□□□ 0.42
CLN3-219ENST00000565778 C16orf89Q6UX73 402 aa17.7■□□□□ 0.42
CLN3-219ENST00000565778 THSD4Q6ZMP0 1018 aa17.7■□□□□ 0.42
CLN3-219ENST00000565778 DPY19L2P2Q6ZN68 376 aa17.7■□□□□ 0.42
CLN3-219ENST00000565778 KLF14Q8TD94 323 aaPredicted RBP17.7■□□□□ 0.42
CLN3-219ENST00000565778 DHRS1Q96LJ7 313 aa17.7■□□□□ 0.42
CLN3-219ENST00000565778 NDE1Q9NXR1 346 aa17.7■□□□□ 0.42
CLN3-219ENST00000565778 COA3Q9Y2R0 106 aaPredicted RBP17.7■□□□□ 0.42
CLN3-219ENST00000565778 PLSCR5A0PG75 271 aa17.69■□□□□ 0.42
CLN3-219ENST00000565778 ARPC2O15144 300 aa17.69■□□□□ 0.42
CLN3-219ENST00000565778 CTLA4P16410 223 aa17.69■□□□□ 0.42
CLN3-219ENST00000565778 TEKQ02763 1124 aa17.69■□□□□ 0.42
CLN3-219ENST00000565778 SCRN3Q0VDG4 424 aa17.69■□□□□ 0.42
CLN3-219ENST00000565778 CR1LQ2VPA4 569 aa17.69■□□□□ 0.42
CLN3-219ENST00000565778 SMARCD3Q6STE5 483 aa17.69■□□□□ 0.42
CLN3-219ENST00000565778 DEFB107AQ8IZN7 70 aa17.69■□□□□ 0.42
CLN3-219ENST00000565778 CLDND2Q8NHS1 167 aa17.69■□□□□ 0.42
CLN3-219ENST00000565778 GTF3AQ92664 365 aaKnown RBP17.69■□□□□ 0.42
CLN3-219ENST00000565778 GPX7Q96SL4 187 aaPredicted RBP17.69■□□□□ 0.42
CLN3-219ENST00000565778 GPA33Q99795 319 aa17.69■□□□□ 0.42
CLN3-219ENST00000565778 FUZQ9BT04 418 aa17.69■□□□□ 0.42
CLN3-219ENST00000565778 SYT4Q9H2B2 425 aa17.69■□□□□ 0.42
CLN3-219ENST00000565778 NDRG4Q9ULP0 352 aaKnown RBP17.69■□□□□ 0.42
CLN3-219ENST00000565778 FBN1P35555 2871 aaKnown RBP17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms