RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 POM121L2Q96KW2 1035 aa7.95□□□□□ -1.14
VPS35-206ENST00000565228 RBP7Q96R05 134 aa7.95□□□□□ -1.14
VPS35-206ENST00000565228 DHRS9Q9BPW9 319 aa7.95□□□□□ -1.14
VPS35-206ENST00000565228 OR2H1Q9GZK4 316 aa7.95□□□□□ -1.14
VPS35-206ENST00000565228 GABARAPL1Q9H0R8 117 aa7.95□□□□□ -1.14
VPS35-206ENST00000565228 RERGLQ9H628 205 aa7.95□□□□□ -1.14
VPS35-206ENST00000565228 PNRC2Q9NPJ4 139 aaKnown RBP7.95□□□□□ -1.14
VPS35-206ENST00000565228 TBC1D23Q9NUY8 699 aa7.95□□□□□ -1.14
VPS35-206ENST00000565228 OAZ3Q9UMX2 235 aa7.95□□□□□ -1.14
VPS35-206ENST00000565228 YLPM1P49750 1951 aaKnown RBP7.95□□□□□ -1.14
VPS35-206ENST00000565228 CR1P17927 2039 aa7.95□□□□□ -1.14
VPS35-206ENST00000565228 SAC3D1A6NKF1 404 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 GNGT2O14610 69 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 RER1O15258 196 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 SYNGR3O43761 229 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 KHDRBS3O75525 346 aaKnown RBP7.94□□□□□ -1.14
VPS35-206ENST00000565228 LY6HO94772 140 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 UBL3O95164 117 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 STAMBPO95630 424 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 NGFP01138 241 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 DBHP09172 617 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 CST2P09228 141 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 OSMP13725 252 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 NR4A1P22736 598 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 HOXC12P31275 282 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 TTKP33981 857 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 IFNGR2P38484 337 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 ZNF84P51523 738 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 ART1P52961 327 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 ADAM8P78325 824 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 PPP2R2BQ00005 443 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 KRTAP27-1Q3LI81 207 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 NRN1LQ496H8 165 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 VHLLQ6RSH7 139 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 CFAP77Q6ZQR2 320 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 ZSCAN2Q7Z7L9 614 aaPredicted RBP7.94□□□□□ -1.14
VPS35-206ENST00000565228 ADCK1Q86TW2 530 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 LINC00346Q8IVM7 164 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 ZCCHC24Q8N2G6 241 aaKnown RBP7.94□□□□□ -1.14
VPS35-206ENST00000565228 ZNF511Q8NB15 262 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 GTF3AQ92664 365 aaKnown RBP7.94□□□□□ -1.14
VPS35-206ENST00000565228 NINJ1Q92982 152 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 FBXW5Q969U6 566 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 NRBF2Q96F24 287 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 MAP6Q96JE9 813 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 SNX18Q96RF0 628 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 CCL19Q99731 98 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 SLC29A1Q99808 456 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 FOXC2Q99958 501 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 MRPL37Q9BZE1 423 aaKnown RBP7.94□□□□□ -1.14
VPS35-206ENST00000565228 RACGAP1Q9H0H5 632 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 OR51B6Q9H340 312 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 WDR76Q9H967 626 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 S100A14Q9HCY8 104 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 NGBQ9NPG2 151 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 KRCC1Q9NPI7 259 aaPredicted RBP7.94□□□□□ -1.14
VPS35-206ENST00000565228 HINT3Q9NQE9 182 aaKnown RBP7.94□□□□□ -1.14
VPS35-206ENST00000565228 ZNF701Q9NV72 531 aaPredicted RBP7.94□□□□□ -1.14
VPS35-206ENST00000565228 FZR1Q9UM11 496 aa7.94□□□□□ -1.14
VPS35-206ENST00000565228 CCDC182A6NF36 153 aa7.93□□□□□ -1.14
VPS35-206ENST00000565228 PRR32B1ATL7 298 aa7.93□□□□□ -1.14
VPS35-206ENST00000565228 DLGAP1O14490 977 aa7.93□□□□□ -1.14
VPS35-206ENST00000565228 XKRYO14609 159 aa7.93□□□□□ -1.14
VPS35-206ENST00000565228 SURF4O15260 269 aa7.93□□□□□ -1.14
VPS35-206ENST00000565228 IDH3BO43837 385 aa7.93□□□□□ -1.14
VPS35-206ENST00000565228 AHCYL1O43865 530 aa7.93□□□□□ -1.14
VPS35-206ENST00000565228 DEAF1O75398 565 aaPredicted RBP7.93□□□□□ -1.14
VPS35-206ENST00000565228 E2F6O75461 281 aa7.93□□□□□ -1.14
VPS35-206ENST00000565228 CIB2O75838 187 aa7.93□□□□□ -1.14
VPS35-206ENST00000565228 CLPTM1O96005 669 aa7.93□□□□□ -1.14
VPS35-206ENST00000565228 IGHV4-39P01824 125 aa7.93□□□□□ -1.14
VPS35-206ENST00000565228 FAM157BP0CG42 384 aa7.93□□□□□ -1.14
VPS35-206ENST00000565228 PAX1P15863 534 aa7.93□□□□□ -1.14
VPS35-206ENST00000565228 SPI1P17947 270 aa7.93□□□□□ -1.14
VPS35-206ENST00000565228 NPR2P20594 1047 aa7.93□□□□□ -1.14
VPS35-206ENST00000565228 GSTM3P21266 225 aa7.93□□□□□ -1.14
VPS35-206ENST00000565228 MSR1P21757 451 aa7.93□□□□□ -1.14
VPS35-206ENST00000565228 SLC2A5P22732 501 aa7.93□□□□□ -1.14
VPS35-206ENST00000565228 FASP25445 335 aa7.93□□□□□ -1.14
VPS35-206ENST00000565228 POU1F1P28069 291 aa7.93□□□□□ -1.14
VPS35-206ENST00000565228 PTH2RP49190 550 aa7.93□□□□□ -1.14
VPS35-206ENST00000565228 COX10Q12887 443 aa7.93□□□□□ -1.14
VPS35-206ENST00000565228 KEAP1Q14145 624 aa7.93□□□□□ -1.14
VPS35-206ENST00000565228 GK3PQ14409 553 aa7.93□□□□□ -1.14
VPS35-206ENST00000565228 ALKBH6Q3KRA9 238 aa7.93□□□□□ -1.14
VPS35-206ENST00000565228 C20orf204Q6ZNR8 217 aa7.93□□□□□ -1.14
VPS35-206ENST00000565228 RFPL4BQ6ZWI9 263 aa7.93□□□□□ -1.14
VPS35-206ENST00000565228 VASH1Q7L8A9 365 aaPredicted RBP7.93□□□□□ -1.14
VPS35-206ENST00000565228 HDDC2Q7Z4H3 204 aa7.93□□□□□ -1.14
VPS35-206ENST00000565228 NAA40Q86UY6 237 aa7.93□□□□□ -1.14
VPS35-206ENST00000565228 GLB1L2Q8IW92 636 aa7.93□□□□□ -1.14
VPS35-206ENST00000565228 CCDC36Q8IYA8 594 aa7.93□□□□□ -1.14
VPS35-206ENST00000565228 CIARTQ8N365 385 aaPredicted RBP7.93□□□□□ -1.14
VPS35-206ENST00000565228 SLC30A7Q8NEW0 376 aa7.93□□□□□ -1.14
VPS35-206ENST00000565228 NUP37Q8NFH4 326 aa7.93□□□□□ -1.14
VPS35-206ENST00000565228 POP5Q969H6 163 aaKnown RBP7.93□□□□□ -1.14
VPS35-206ENST00000565228 UBE2FQ969M7 185 aa7.93□□□□□ -1.14
VPS35-206ENST00000565228 PERPQ96FX8 193 aa7.93□□□□□ -1.14
VPS35-206ENST00000565228 AMELYQ99218 206 aa7.93□□□□□ -1.14
VPS35-206ENST00000565228 DOK1Q99704 481 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms