RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 KCTD14Q9BQ13 255 aaPredicted RBP3.13□□□□□ -1.91
LINC00560-201ENST00000564593 CCDC77Q9BR77 488 aa3.13□□□□□ -1.91
LINC00560-201ENST00000564593 TM9SF3Q9HD45 589 aa3.13□□□□□ -1.91
LINC00560-201ENST00000564593 SLC25A37Q9NYZ2 338 aa3.13□□□□□ -1.91
LINC00560-201ENST00000564593 XCL2Q9UBD3 114 aa3.13□□□□□ -1.91
LINC00560-201ENST00000564593 CSDC2Q9Y534 153 aaKnown RBP3.13□□□□□ -1.91
LINC00560-201ENST00000564593 MYH8P13535 1937 aa3.13□□□□□ -1.91
LINC00560-201ENST00000564593 AHDC1Q5TGY3 1603 aaPredicted RBP3.13□□□□□ -1.91
LINC00560-201ENST00000564593 A6NDX4 124 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 ERVV-1B6SEH8 477 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 SLC31A2O15432 143 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 SOX15O60248 233 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 KRT6AP02538 564 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 CT62P0C5K7 136 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 GKN3PP0CG01 181 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 CALM1P0DP23 149 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 CALM2P0DP24 149 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 CALM3P0DP25 149 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 TROVE2P10155 538 aaKnown RBP eCLIP3.12□□□□□ -1.91
LINC00560-201ENST00000564593 HSPD1P10809 573 aaKnown RBP3.12□□□□□ -1.91
LINC00560-201ENST00000564593 TDGF1P13385 188 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 GPR6P46095 362 aaPredicted RBP3.12□□□□□ -1.91
LINC00560-201ENST00000564593 TDGF1P3P51864 188 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 SUB1P53999 127 aaKnown RBP eCLIP3.12□□□□□ -1.91
LINC00560-201ENST00000564593 MKXQ8IYA7 352 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 CEP112Q8N8E3 955 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 Q8N9W7 124 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 SPATA4Q8NEY3 305 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 NPBQ8NG41 125 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 OR2G3Q8NGZ4 309 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 BLOC1S5Q8TDH9 187 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 CYYR1Q96J86 154 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 CCDC94Q9BW85 323 aaPredicted RBP3.12□□□□□ -1.91
LINC00560-201ENST00000564593 NUP50Q9UKX7 468 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 TP53TG5Q9Y2B4 290 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 HEBP2Q9Y5Z4 205 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 SCN7AQ01118 1682 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 TNKS1BP1Q9C0C2 1729 aaKnown RBP3.12□□□□□ -1.91
LINC00560-201ENST00000564593 NID2Q14112 1375 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 MYO5AQ9Y4I1 1855 aaKnown RBP3.12□□□□□ -1.91
LINC00560-201ENST00000564593 COL5A3P25940 1745 aaPredicted RBP3.12□□□□□ -1.91
LINC00560-201ENST00000564593 E7EWF7 191 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 SMC2O95347 1197 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 CRYGBP07316 175 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 CSF3P09919 207 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 MGMTP16455 207 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 UGT2B15P54855 530 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 REG3AQ06141 175 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 SLC39A6Q13433 755 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 FZD2Q14332 565 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 RFX4Q33E94 735 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 ZNF621Q6ZSS3 439 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 LHFPL3Q86UP9 236 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 PLPPR1Q8TBJ4 325 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 SLC22A8Q8TCC7 542 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 MCOLN3Q8TDD5 553 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 SDR42E1Q8WUS8 393 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 ECSITQ9BQ95 431 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 GPR61Q9BZJ8 451 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 PACSIN2Q9UNF0 486 aaPredicted RBP3.12□□□□□ -1.91
LINC00560-201ENST00000564593 TRAPPC4Q9Y296 219 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 STARD10Q9Y365 291 aa3.12□□□□□ -1.91
LINC00560-201ENST00000564593 RIC1Q4ADV7 1423 aa3.11□□□□□ -1.91
LINC00560-201ENST00000564593 ROBO1Q9Y6N7 1651 aa3.11□□□□□ -1.91
LINC00560-201ENST00000564593 STRCQ7RTU9 1775 aa3.11□□□□□ -1.91
LINC00560-201ENST00000564593 NAV1Q8NEY1 1877 aa3.11□□□□□ -1.91
LINC00560-201ENST00000564593 PPP1R2P9O14990 202 aa3.11□□□□□ -1.91
LINC00560-201ENST00000564593 WBP4O75554 376 aaKnown RBP3.11□□□□□ -1.91
LINC00560-201ENST00000564593 PNMA6AP0CW24 399 aaPredicted RBP3.11□□□□□ -1.91
LINC00560-201ENST00000564593 MDKP21741 143 aaPredicted RBP3.11□□□□□ -1.91
LINC00560-201ENST00000564593 SYKP43405 635 aa3.11□□□□□ -1.91
LINC00560-201ENST00000564593 RPS10P46783 165 aaKnown RBP3.11□□□□□ -1.91
LINC00560-201ENST00000564593 TFPI2P48307 235 aa3.11□□□□□ -1.91
LINC00560-201ENST00000564593 IRX3P78415 501 aaPredicted RBP3.11□□□□□ -1.91
LINC00560-201ENST00000564593 MRPS22P82650 360 aaKnown RBP3.11□□□□□ -1.91
LINC00560-201ENST00000564593 MYL5Q02045 173 aa3.11□□□□□ -1.91
LINC00560-201ENST00000564593 SPAG1Q07617 926 aa3.11□□□□□ -1.91
LINC00560-201ENST00000564593 ALX1Q15699 326 aa3.11□□□□□ -1.91
LINC00560-201ENST00000564593 VPS26BQ4G0F5 336 aa3.11□□□□□ -1.91
LINC00560-201ENST00000564593 ASCL5Q7RTU5 278 aa3.11□□□□□ -1.91
LINC00560-201ENST00000564593 DTX3LQ8TDB6 740 aa3.11□□□□□ -1.91
LINC00560-201ENST00000564593 ESR2Q92731 530 aa3.11□□□□□ -1.91
LINC00560-201ENST00000564593 SGK3Q96BR1 496 aa3.11□□□□□ -1.91
LINC00560-201ENST00000564593 CENPKQ9BS16 269 aa3.11□□□□□ -1.91
LINC00560-201ENST00000564593 NUP58Q9BVL2 599 aa3.11□□□□□ -1.91
LINC00560-201ENST00000564593 INPP5EQ9NRR6 644 aa3.11□□□□□ -1.91
LINC00560-201ENST00000564593 DEC1Q9P2X7 70 aa3.11□□□□□ -1.91
LINC00560-201ENST00000564593 PRRC2AP48634 2157 aaKnown RBP3.11□□□□□ -1.91
LINC00560-201ENST00000564593 BCL9O00512 1426 aa3.11□□□□□ -1.91
LINC00560-201ENST00000564593 TNRC6CQ9HCJ0 1690 aaKnown RBP3.11□□□□□ -1.91
LINC00560-201ENST00000564593 NRAPQ86VF7 1730 aa3.11□□□□□ -1.91
LINC00560-201ENST00000564593 IGKV1D-13A0A0B4J2D9 117 aa3.1□□□□□ -1.91
LINC00560-201ENST00000564593 CTAGE15A4D2H0 777 aa3.1□□□□□ -1.91
LINC00560-201ENST00000564593 H3BNH8 94 aa3.1□□□□□ -1.91
LINC00560-201ENST00000564593 KLHL41O60662 606 aa3.1□□□□□ -1.91
LINC00560-201ENST00000564593 ERLIN1O75477 346 aa3.1□□□□□ -1.91
LINC00560-201ENST00000564593 DEXIO95424 95 aa3.1□□□□□ -1.91
LINC00560-201ENST00000564593 FGGP02679 453 aa3.1□□□□□ -1.91
LINC00560-201ENST00000564593 IGKV1-13P0DP09 117 aa3.1□□□□□ -1.91
LINC00560-201ENST00000564593 PPP1R2P41236 205 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms