RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 S100PBPQ96BU1 408 aa18.05■□□□□ 0.48
CLN3-212ENST00000564574 MNTQ99583 582 aa18.05■□□□□ 0.48
CLN3-212ENST00000564574 SH3GL3Q99963 347 aa18.05■□□□□ 0.48
CLN3-212ENST00000564574 CDADC1Q9BWV3 514 aa18.05■□□□□ 0.48
CLN3-212ENST00000564574 MOV10Q9HCE1 1003 aaKnown RBP18.05■□□□□ 0.48
CLN3-212ENST00000564574 MRPS18AQ9NVS2 196 aaKnown RBP18.05■□□□□ 0.48
CLN3-212ENST00000564574 POLR1DQ9Y2S0 133 aa18.05■□□□□ 0.48
CLN3-212ENST00000564574 IRGMA1A4Y4 181 aa18.04■□□□□ 0.48
CLN3-212ENST00000564574 SBK2P0C263 348 aa18.04■□□□□ 0.48
CLN3-212ENST00000564574 NUDT6P53370 316 aa18.04■□□□□ 0.48
CLN3-212ENST00000564574 SMN1Q16637 294 aaKnown RBP18.04■□□□□ 0.48
CLN3-212ENST00000564574 KLHL22Q53GT1 634 aa18.04■□□□□ 0.48
CLN3-212ENST00000564574 LAIR2Q6ISS4 152 aa18.04■□□□□ 0.48
CLN3-212ENST00000564574 UGT2A3Q6UWM9 527 aa18.04■□□□□ 0.48
CLN3-212ENST00000564574 B3GLCTQ6Y288 498 aa18.04■□□□□ 0.48
CLN3-212ENST00000564574 OR6N2Q8NGY6 317 aa18.04■□□□□ 0.48
CLN3-212ENST00000564574 HSD17B8Q92506 261 aa18.04■□□□□ 0.48
CLN3-212ENST00000564574 HTRA1Q92743 480 aa18.04■□□□□ 0.48
CLN3-212ENST00000564574 RNFT2Q96EX2 444 aa18.04■□□□□ 0.48
CLN3-212ENST00000564574 YIPF3Q9GZM5 350 aa18.04■□□□□ 0.48
CLN3-212ENST00000564574 WDR76Q9H967 626 aa18.04■□□□□ 0.48
CLN3-212ENST00000564574 ADGRL4Q9HBW9 690 aa18.04■□□□□ 0.48
CLN3-212ENST00000564574 CCNB1IP1Q9NPC3 277 aa18.04■□□□□ 0.48
CLN3-212ENST00000564574 PCDHGB1Q9Y5G3 927 aa18.04■□□□□ 0.48
CLN3-212ENST00000564574 KLF2Q9Y5W3 355 aaPredicted RBP18.04■□□□□ 0.48
CLN3-212ENST00000564574 ZNF593O00488 134 aaPredicted RBP18.03■□□□□ 0.48
CLN3-212ENST00000564574 CCDC159P0C7I6 412 aa18.03■□□□□ 0.48
CLN3-212ENST00000564574 ATP6V1E1P36543 226 aa18.03■□□□□ 0.48
CLN3-212ENST00000564574 ARR3P36575 388 aa18.03■□□□□ 0.48
CLN3-212ENST00000564574 CAPZA2P47755 286 aa18.03■□□□□ 0.48
CLN3-212ENST00000564574 SCRN3Q0VDG4 424 aa18.03■□□□□ 0.48
CLN3-212ENST00000564574 RAB40BQ12829 278 aa18.03■□□□□ 0.48
CLN3-212ENST00000564574 TMEM53Q6P2H8 277 aa18.03■□□□□ 0.48
CLN3-212ENST00000564574 ZSCAN2Q7Z7L9 614 aaPredicted RBP18.03■□□□□ 0.48
CLN3-212ENST00000564574 ZNF454Q8N9F8 522 aa18.03■□□□□ 0.48
CLN3-212ENST00000564574 WDR31Q8NA23 367 aa18.03■□□□□ 0.48
CLN3-212ENST00000564574 OR51G2Q8NGK0 314 aa18.03■□□□□ 0.48
CLN3-212ENST00000564574 OR2AJ1Q8NGZ0 328 aa18.03■□□□□ 0.48
CLN3-212ENST00000564574 MUCL1Q96DR8 90 aa18.03■□□□□ 0.48
CLN3-212ENST00000564574 ZNF224Q9NZL3 707 aa18.03■□□□□ 0.48
CLN3-212ENST00000564574 CYB5R1Q9UHQ9 305 aa18.03■□□□□ 0.48
CLN3-212ENST00000564574 FBXL3Q9UKT7 428 aa18.03■□□□□ 0.48
CLN3-212ENST00000564574 EXOGQ9Y2C4 368 aaKnown RBP18.03■□□□□ 0.48
CLN3-212ENST00000564574 LHFPL6Q9Y693 200 aa18.03■□□□□ 0.48
CLN3-212ENST00000564574 TMEM14AQ9Y6G1 99 aa18.03■□□□□ 0.48
CLN3-212ENST00000564574 SLC1A7O00341 560 aa18.02■□□□□ 0.48
CLN3-212ENST00000564574 SELENOFO60613 162 aa18.02■□□□□ 0.48
CLN3-212ENST00000564574 FAM20BO75063 409 aa18.02■□□□□ 0.48
CLN3-212ENST00000564574 MRPL3P09001 348 aaKnown RBP18.02■□□□□ 0.48
CLN3-212ENST00000564574 MMP7P09237 267 aaPredicted RBP18.02■□□□□ 0.48
CLN3-212ENST00000564574 SPARCP09486 303 aa18.02■□□□□ 0.48
CLN3-212ENST00000564574 NAA10P41227 235 aaPredicted RBP18.02■□□□□ 0.48
CLN3-212ENST00000564574 SLC15A1P46059 708 aa18.02■□□□□ 0.48
CLN3-212ENST00000564574 RBM48Q5RL73 367 aaKnown RBP18.02■□□□□ 0.48
CLN3-212ENST00000564574 GJC3Q8NFK1 279 aa18.02■□□□□ 0.48
CLN3-212ENST00000564574 BPIFB6Q8NFQ5 453 aa18.02■□□□□ 0.48
CLN3-212ENST00000564574 LGALS12Q96DT0 336 aa18.02■□□□□ 0.48
CLN3-212ENST00000564574 FBXO17Q96EF6 278 aa18.02■□□□□ 0.48
CLN3-212ENST00000564574 RNF121Q9H920 327 aa18.02■□□□□ 0.48
CLN3-212ENST00000564574 AMBNQ9NP70 447 aa18.02■□□□□ 0.48
CLN3-212ENST00000564574 SCN3BQ9NY72 215 aa18.02■□□□□ 0.48
CLN3-212ENST00000564574 B3GNT2Q9NY97 397 aa18.02■□□□□ 0.48
CLN3-212ENST00000564574 UBAP1Q9NZ09 502 aa18.02■□□□□ 0.48
CLN3-212ENST00000564574 CNOT2Q9NZN8 540 aaKnown RBP18.02■□□□□ 0.48
CLN3-212ENST00000564574 ASH2LQ9UBL3 628 aa18.02■□□□□ 0.48
CLN3-212ENST00000564574 NDRG3Q9UGV2 375 aa18.02■□□□□ 0.48
CLN3-212ENST00000564574 TIMM10BQ9Y5J6 103 aa18.02■□□□□ 0.48
CLN3-212ENST00000564574 SLC25A15Q9Y619 301 aa18.02■□□□□ 0.48
CLN3-212ENST00000564574 EFCAB10A6NFE3 127 aa18.01■□□□□ 0.47
CLN3-212ENST00000564574 PHYHO14832 338 aa18.01■□□□□ 0.47
CLN3-212ENST00000564574 FADS2O95864 444 aaKnown RBP18.01■□□□□ 0.47
CLN3-212ENST00000564574 HLA-HP01893 362 aa18.01■□□□□ 0.47
CLN3-212ENST00000564574 OR2T7P0C7T2 308 aa18.01■□□□□ 0.47
CLN3-212ENST00000564574 CD79AP11912 226 aa18.01■□□□□ 0.47
CLN3-212ENST00000564574 PIPP12273 146 aaPredicted RBP18.01■□□□□ 0.47
CLN3-212ENST00000564574 ZNF32P17041 273 aa18.01■□□□□ 0.47
CLN3-212ENST00000564574 HIST1H3AP68431 136 aa18.01■□□□□ 0.47
CLN3-212ENST00000564574 PPA1Q15181 289 aa18.01■□□□□ 0.47
CLN3-212ENST00000564574 GSG1Q2KHT4 349 aa18.01■□□□□ 0.47
CLN3-212ENST00000564574 HIST2H3PS2Q5TEC6 136 aa18.01■□□□□ 0.47
CLN3-212ENST00000564574 SLC18B1Q6NT16 456 aa18.01■□□□□ 0.47
CLN3-212ENST00000564574 HIST2H3AQ71DI3 136 aa18.01■□□□□ 0.47
CLN3-212ENST00000564574 DPY19L4Q7Z388 723 aa18.01■□□□□ 0.47
CLN3-212ENST00000564574 CDC20BQ86Y33 519 aa18.01■□□□□ 0.47
CLN3-212ENST00000564574 SLC35F2Q8IXU6 374 aa18.01■□□□□ 0.47
CLN3-212ENST00000564574 FAM169BQ8N8A8 192 aa18.01■□□□□ 0.47
CLN3-212ENST00000564574 OR2T27Q8NH04 317 aa18.01■□□□□ 0.47
CLN3-212ENST00000564574 OR52N5Q8NH56 324 aa18.01■□□□□ 0.47
CLN3-212ENST00000564574 OTOSQ8NHW6 89 aa18.01■□□□□ 0.47
CLN3-212ENST00000564574 YTHDF1Q9BYJ9 559 aaKnown RBP18.01■□□□□ 0.47
CLN3-212ENST00000564574 BLOC1S6Q9UL45 172 aa18.01■□□□□ 0.47
CLN3-212ENST00000564574 LRCH1Q9Y2L9 728 aa18.01■□□□□ 0.47
CLN3-212ENST00000564574 TPRKBQ9Y3C4 175 aa18.01■□□□□ 0.47
CLN3-212ENST00000564574 UBR5O95071 2799 aaPredicted RBP18.01■□□□□ 0.47
CLN3-212ENST00000564574 RAB36O95755 333 aa18■□□□□ 0.47
CLN3-212ENST00000564574 RNF224P0DH78 156 aa18■□□□□ 0.47
CLN3-212ENST00000564574 CBR1P16152 277 aa18■□□□□ 0.47
CLN3-212ENST00000564574 GRNP28799 593 aaKnown RBP18■□□□□ 0.47
CLN3-212ENST00000564574 RAB1AP62820 205 aa18■□□□□ 0.47
CLN3-212ENST00000564574 ACTC1P68032 377 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms