RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 REG4Q9BYZ8 158 aa11.55□□□□□ -0.56
CLK3-216ENST00000564468 SYT4Q9H2B2 425 aa11.55□□□□□ -0.56
CLK3-216ENST00000564468 MS4A5Q9H3V2 200 aa11.55□□□□□ -0.56
CLK3-216ENST00000564468 SAMHD1Q9Y3Z3 626 aaKnown RBP11.55□□□□□ -0.56
CLK3-216ENST00000564468 TLN2Q9Y4G6 2542 aa11.55□□□□□ -0.56
CLK3-216ENST00000564468 STAB1Q9NY15 2570 aa11.55□□□□□ -0.56
CLK3-216ENST00000564468 ATRQ13535 2644 aa11.54□□□□□ -0.56
CLK3-216ENST00000564468 DHRS12A0PJE2 317 aa11.54□□□□□ -0.56
CLK3-216ENST00000564468 GNGT2O14610 69 aa11.54□□□□□ -0.56
CLK3-216ENST00000564468 SYNGR3O43761 229 aa11.54□□□□□ -0.56
CLK3-216ENST00000564468 CST1P01037 141 aa11.54□□□□□ -0.56
CLK3-216ENST00000564468 SLC25A16P16260 332 aa11.54□□□□□ -0.56
CLK3-216ENST00000564468 GSTM3P21266 225 aa11.54□□□□□ -0.56
CLK3-216ENST00000564468 APEX1P27695 318 aaKnown RBP11.54□□□□□ -0.56
CLK3-216ENST00000564468 PDLIM4P50479 330 aa11.54□□□□□ -0.56
CLK3-216ENST00000564468 UCP2P55851 309 aa11.54□□□□□ -0.56
CLK3-216ENST00000564468 LSM6P62312 80 aaKnown RBP11.54□□□□□ -0.56
CLK3-216ENST00000564468 PSG4Q00888 419 aa11.54□□□□□ -0.56
CLK3-216ENST00000564468 SCRN3Q0VDG4 424 aa11.54□□□□□ -0.56
CLK3-216ENST00000564468 FLOT2Q14254 428 aa11.54□□□□□ -0.56
CLK3-216ENST00000564468 MOGQ16653 247 aa11.54□□□□□ -0.56
CLK3-216ENST00000564468 MICAQ29983 383 aa11.54□□□□□ -0.56
CLK3-216ENST00000564468 ARL9Q6T311 187 aa11.54□□□□□ -0.56
CLK3-216ENST00000564468 ZNF620Q6ZNG0 422 aa11.54□□□□□ -0.56
CLK3-216ENST00000564468 RASSF6Q6ZTQ3 369 aa11.54□□□□□ -0.56
CLK3-216ENST00000564468 SPATA24Q86W54 205 aa11.54□□□□□ -0.56
CLK3-216ENST00000564468 GLB1L2Q8IW92 636 aa11.54□□□□□ -0.56
CLK3-216ENST00000564468 CIARTQ8N365 385 aaPredicted RBP11.54□□□□□ -0.56
CLK3-216ENST00000564468 SVOPLQ8N434 492 aa11.54□□□□□ -0.56
CLK3-216ENST00000564468 OR10H5Q8NGA6 315 aa11.54□□□□□ -0.56
CLK3-216ENST00000564468 OR4C15Q8NGM1 316 aa11.54□□□□□ -0.56
CLK3-216ENST00000564468 C11orf40Q8WZ69 217 aa11.54□□□□□ -0.56
CLK3-216ENST00000564468 ZNF416Q9BWM5 594 aa11.54□□□□□ -0.56
CLK3-216ENST00000564468 CHID1Q9BWS9 393 aa11.54□□□□□ -0.56
CLK3-216ENST00000564468 OR2H1Q9GZK4 316 aa11.54□□□□□ -0.56
CLK3-216ENST00000564468 RERGLQ9H628 205 aa11.54□□□□□ -0.56
CLK3-216ENST00000564468 NDRG4Q9ULP0 352 aaKnown RBP11.54□□□□□ -0.56
CLK3-216ENST00000564468 CDH10Q9Y6N8 788 aa11.54□□□□□ -0.56
CLK3-216ENST00000564468 HIVEP2P31629 2446 aa11.54□□□□□ -0.56
CLK3-216ENST00000564468 TMEM129A0AVI4 362 aa11.53□□□□□ -0.56
CLK3-216ENST00000564468 RNF223E7ERA6 249 aa11.53□□□□□ -0.56
CLK3-216ENST00000564468 M0R233 179 aa11.53□□□□□ -0.56
CLK3-216ENST00000564468 NDUFS8O00217 210 aa11.53□□□□□ -0.56
CLK3-216ENST00000564468 GPRIN2O60269 458 aa11.53□□□□□ -0.56
CLK3-216ENST00000564468 GASTP01350 101 aa11.53□□□□□ -0.56
CLK3-216ENST00000564468 LCKP06239 509 aa11.53□□□□□ -0.56
CLK3-216ENST00000564468 FAM157BP0CG42 384 aa11.53□□□□□ -0.56
CLK3-216ENST00000564468 COX5BP10606 129 aa11.53□□□□□ -0.56
CLK3-216ENST00000564468 CCL2P13500 99 aa11.53□□□□□ -0.56
CLK3-216ENST00000564468 CTLA4P16410 223 aa11.53□□□□□ -0.56
CLK3-216ENST00000564468 CCNOP22674 350 aa11.53□□□□□ -0.56
CLK3-216ENST00000564468 CDKN2AP42771 156 aaKnown RBP11.53□□□□□ -0.56
CLK3-216ENST00000564468 BNIP1Q12981 228 aa11.53□□□□□ -0.56
CLK3-216ENST00000564468 AQP6Q13520 282 aa11.53□□□□□ -0.56
CLK3-216ENST00000564468 ENDOGQ14249 297 aaKnown RBP11.53□□□□□ -0.56
CLK3-216ENST00000564468 LEG1Q6P5S2 330 aa11.53□□□□□ -0.56
CLK3-216ENST00000564468 PTCHD4Q6ZW05 846 aa11.53□□□□□ -0.56
CLK3-216ENST00000564468 ADGRG5Q8IZF4 528 aa11.53□□□□□ -0.56
CLK3-216ENST00000564468 AQP11Q8NBQ7 271 aa11.53□□□□□ -0.56
CLK3-216ENST00000564468 CPEB3Q8NE35 698 aaKnown RBP11.53□□□□□ -0.56
CLK3-216ENST00000564468 OR9Q2Q8NGE9 314 aa11.53□□□□□ -0.56
CLK3-216ENST00000564468 AKR7LQ8NHP1 331 aa11.53□□□□□ -0.56
CLK3-216ENST00000564468 CANT1Q8WVQ1 401 aa11.53□□□□□ -0.56
CLK3-216ENST00000564468 POM121L2Q96KW2 1035 aa11.53□□□□□ -0.56
CLK3-216ENST00000564468 SORCS2Q96PQ0 1159 aa11.53□□□□□ -0.56
CLK3-216ENST00000564468 DGCR6LQ9BY27 220 aa11.53□□□□□ -0.56
CLK3-216ENST00000564468 MRPL37Q9BZE1 423 aaKnown RBP11.53□□□□□ -0.56
CLK3-216ENST00000564468 NUAK2Q9H093 628 aa11.53□□□□□ -0.56
CLK3-216ENST00000564468 MMADHCQ9H3L0 296 aaPredicted RBP11.53□□□□□ -0.56
CLK3-216ENST00000564468 ELOVL3Q9HB03 270 aa11.53□□□□□ -0.56
CLK3-216ENST00000564468 IL20Q9NYY1 176 aa11.53□□□□□ -0.56
CLK3-216ENST00000564468 DUSP13Q9UII6 198 aa11.53□□□□□ -0.56
CLK3-216ENST00000564468 COA3Q9Y2R0 106 aaPredicted RBP11.53□□□□□ -0.56
CLK3-216ENST00000564468 FN1P02751 2386 aaKnown RBP11.52□□□□□ -0.57
CLK3-216ENST00000564468 LOC390937A0A1W2PQ73 354 aa11.52□□□□□ -0.57
CLK3-216ENST00000564468 C5orf49A4QMS7 147 aa11.52□□□□□ -0.57
CLK3-216ENST00000564468 GSC2O15499 205 aa11.52□□□□□ -0.57
CLK3-216ENST00000564468 HIST1H1CP16403 213 aaKnown RBP11.52□□□□□ -0.57
CLK3-216ENST00000564468 CENPAP49450 140 aa11.52□□□□□ -0.57
CLK3-216ENST00000564468 ARHGDIAP52565 204 aa11.52□□□□□ -0.57
CLK3-216ENST00000564468 KLF3P57682 345 aaPredicted RBP11.52□□□□□ -0.57
CLK3-216ENST00000564468 PPP2R2BQ00005 443 aa11.52□□□□□ -0.57
CLK3-216ENST00000564468 GLO1Q04760 184 aa11.52□□□□□ -0.57
CLK3-216ENST00000564468 COX10Q12887 443 aa11.52□□□□□ -0.57
CLK3-216ENST00000564468 KCNMB1Q16558 191 aa11.52□□□□□ -0.57
CLK3-216ENST00000564468 SLC36A3Q495N2 470 aa11.52□□□□□ -0.57
CLK3-216ENST00000564468 ZNF770Q6IQ21 691 aaPredicted RBP11.52□□□□□ -0.57
CLK3-216ENST00000564468 PAQR4Q8N4S7 273 aaPredicted RBP11.52□□□□□ -0.57
CLK3-216ENST00000564468 ZNF525Q8N782 197 aa11.52□□□□□ -0.57
CLK3-216ENST00000564468 ZNF540Q8NDQ6 660 aa11.52□□□□□ -0.57
CLK3-216ENST00000564468 OR4K13Q8NH42 304 aa11.52□□□□□ -0.57
CLK3-216ENST00000564468 SYNPRQ8TBG9 265 aa11.52□□□□□ -0.57
CLK3-216ENST00000564468 GIPC3Q8TF64 312 aa11.52□□□□□ -0.57
CLK3-216ENST00000564468 MDFIQ99750 246 aa11.52□□□□□ -0.57
CLK3-216ENST00000564468 RACGAP1Q9H0H5 632 aa11.52□□□□□ -0.57
CLK3-216ENST00000564468 WNT5BQ9H1J7 359 aa11.52□□□□□ -0.57
CLK3-216ENST00000564468 TBC1D23Q9NUY8 699 aa11.52□□□□□ -0.57
CLK3-216ENST00000564468 SLCO1C1Q9NYB5 712 aa11.52□□□□□ -0.57
CLK3-216ENST00000564468 REV1Q9UBZ9 1251 aa11.52□□□□□ -0.57
CLK3-216ENST00000564468 B9D1Q9UPM9 204 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms