RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 GLTPD2A6NH11 291 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 SLC38A8A6NNN8 435 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 HIDE1A8MVS5 230 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 KLRF2D3W0D1 207 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 F6UZH7 168 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 GPR31O00270 319 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 FAAHO00519 579 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 EI24O14681 340 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 NBR2O15453 112 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 MSH4O15457 936 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 GYG2O15488 501 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 PDE6DO43924 150 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 SNX3O60493 162 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 LYPLA1O75608 230 aaPredicted RBP4.51□□□□□ -1.69
VPS35-205ENST00000563984 OR2J3O76001 311 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 S1PR2O95136 353 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 CBX6O95503 412 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 HPP00738 406 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 HPRP00739 348 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 WNT1P04628 370 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 ATP1A1P05023 1023 aaKnown RBP4.51□□□□□ -1.69
VPS35-205ENST00000563984 ISG15P05161 165 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 ALPLP05186 524 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 MYL2P10916 166 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 GABRR2P28476 465 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 S100A2P29034 98 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 SSTR1P30872 391 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 ETV6P41212 452 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 RGRP47804 291 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 THBS3P49746 956 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 CAV2P51636 162 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 F2RL1P55085 397 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 BIDP55957 195 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 FOXL2P58012 376 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 RPL15P61313 204 aaKnown RBP4.51□□□□□ -1.69
VPS35-205ENST00000563984 RPL32P62910 135 aaKnown RBP4.51□□□□□ -1.69
VPS35-205ENST00000563984 CXCL9Q07325 125 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 ARHGAP1Q07960 439 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 ACSM2AQ08AH3 577 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 PJVKQ0ZLH3 352 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 MLLT11Q13015 90 aaPredicted RBP4.51□□□□□ -1.69
VPS35-205ENST00000563984 NFATC2Q13469 925 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 MRPL23Q16540 153 aaKnown RBP4.51□□□□□ -1.69
VPS35-205ENST00000563984 PLPPR5Q32ZL2 321 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 ARHGAP11BQ3KRB8 267 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 LRRC73Q5JTD7 316 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 SAMD4BQ5PRF9 694 aaKnown RBP4.51□□□□□ -1.69
VPS35-205ENST00000563984 UTF1Q5T230 341 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 ACSM2BQ68CK6 577 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 FAM159AQ6UWV7 190 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 DRAM2Q6UX65 266 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 RNF165Q6ZSG1 346 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 COX15Q7KZN9 410 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 DET1Q7L5Y6 550 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 OLIG3Q7RTU3 272 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 RNF130Q86XS8 419 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 C8orf31Q8N9H6 132 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 SLC38A9Q8NBW4 561 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 INO80EQ8NBZ0 244 aaPredicted RBP4.51□□□□□ -1.69
VPS35-205ENST00000563984 LFNGQ8NES3 379 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 OR4K2Q8NGD2 314 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 OR4P4Q8NGL7 312 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 OR4A16Q8NH70 328 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 OR5R1Q8NH85 324 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 RPUSD4Q96CM3 377 aaKnown RBP4.51□□□□□ -1.69
VPS35-205ENST00000563984 CXorf40BQ96DE9 158 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 SPATA33Q96N06 139 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 SEPHS2Q99611 448 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 MICU1Q9BPX6 476 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 FUNDC2Q9BWH2 189 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 UBE2ZQ9H832 354 aaPredicted RBP4.51□□□□□ -1.69
VPS35-205ENST00000563984 WFDC1Q9HC57 220 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 DNAJC4Q9NNZ3 241 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 SAR1AQ9NR31 198 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 FAM49BQ9NUQ9 324 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 SLC9A2Q9UBY0 812 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 TFR2Q9UP52 801 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 EXO1Q9UQ84 846 aaKnown RBP4.51□□□□□ -1.69
VPS35-205ENST00000563984 B3GALT5Q9Y2C3 310 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 SLC6A5Q9Y345 797 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 SBDSQ9Y3A5 250 aaKnown RBP eCLIP4.51□□□□□ -1.69
VPS35-205ENST00000563984 PLCH2O75038 1416 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 C9orf84Q5VXU9 1444 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 ANKRD50Q9ULJ7 1429 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 SYNMO15061 1565 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 POLR1AO95602 1720 aaPredicted RBP4.51□□□□□ -1.69
VPS35-205ENST00000563984 KIAA0586Q9BVV6 1533 aa4.51□□□□□ -1.69
VPS35-205ENST00000563984 AKAP11Q9UKA4 1901 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 MBD5Q9P267 1494 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 ASTN1O14525 1302 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 CDC42BPAQ5VT25 1732 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 IGKV2D-30A0A075B6S6 120 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 KBTBD11-OT1A0A1B0GTJ5 212 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 TMEM89A2RUT3 159 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 PRSS37A4D1T9 235 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 OR5H14A6NHG9 310 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 A8MWP6 167 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 HHLA1C9JL84 531 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 E9PQ18 207 aa4.5□□□□□ -1.69
VPS35-205ENST00000563984 H7C417 338 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms