RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 ZNF107Q9UII5 783 aaPredicted RBP6.71□□□□□ -1.34
VPS39-204ENST00000561818 COPS3Q9UNS2 423 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 COA3Q9Y2R0 106 aaPredicted RBP6.71□□□□□ -1.34
VPS39-204ENST00000561818 V9GYH0 126 aa6.71□□□□□ -1.34
VPS39-204ENST00000561818 IGKV3D-15A0A087WSY6 115 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 TRBV5-7A0A0A0MS05 114 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 A0A1B0GVI7 797 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 TMEM269A0A1B0GVZ9 245 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 PROB1E7EW31 1015 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 CTDSP2O14595 271 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 MAGEB3O15480 346 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 GSTZ1O43708 216 aaPredicted RBP6.7□□□□□ -1.34
VPS39-204ENST00000561818 NME2P1O60361 137 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 ZIC3O60481 467 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 CYTIPO60759 359 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 ALX3O95076 343 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 UBBP0CG47 229 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 IL7P13232 177 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 NME2P22392 152 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 SFTPDP35247 375 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 CD97P48960 835 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 DNASE1L1P49184 302 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 GSK3AP49840 483 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 RAG2P55895 527 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 RAB25P57735 213 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 DYRK1AQ13627 763 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 MELKQ14680 651 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 OR1C1Q15619 314 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 C11orf91Q3C1V1 193 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 SOWAHCQ53LP3 525 aaPredicted RBP6.7□□□□□ -1.34
VPS39-204ENST00000561818 C1QL3Q5VWW1 255 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 STEAP3Q658P3 488 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 DESI1Q6ICB0 168 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 SLC25A25Q6KCM7 469 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 CNIH2Q6PI25 160 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 SLC25A47Q6Q0C1 308 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 PLET1Q6UQ28 207 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 B3GLCTQ6Y288 498 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 C16orf47Q6ZP98 133 aaPredicted RBP6.7□□□□□ -1.34
VPS39-204ENST00000561818 SSX6Q7RTT6 188 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 DCXRQ7Z4W1 244 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 MDGA2Q7Z553 956 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 LUZP2Q86TE4 346 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 ZNF554Q86TJ5 538 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 CATSPERDQ86XM0 798 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 SERPINA12Q8IW75 414 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 GPR137CQ8N3F9 429 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 GALNT16Q8N428 558 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 FAM83FQ8NEG4 500 aaPredicted RBP6.7□□□□□ -1.34
VPS39-204ENST00000561818 OR2M7Q8NG81 312 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 OR5D14Q8NGL3 314 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 OR6M1Q8NGM8 313 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 ST7LQ8TDW4 575 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 CHAC2Q8WUX2 184 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 TMEM54Q969K7 222 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 RFT1Q96AA3 541 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 SLAMF6Q96DU3 332 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 GNRHR2Q96P88 292 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 TSSK2Q96PF2 358 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 SORCS2Q96PQ0 1159 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 OR14A2Q96R54 314 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 SOSTQ9BQB4 213 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 NUDT16L1Q9BRJ7 211 aaKnown RBP6.7□□□□□ -1.34
VPS39-204ENST00000561818 ULBP2Q9BZM5 246 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 ACTR6Q9GZN1 396 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 OPA3Q9H6K4 179 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 ZNF703Q9H7S9 590 aaPredicted RBP6.7□□□□□ -1.34
VPS39-204ENST00000561818 AKIRIN1Q9H9L7 192 aaPredicted RBP6.7□□□□□ -1.34
VPS39-204ENST00000561818 NOX4Q9NPH5 578 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 BRD7Q9NPI1 651 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 DIABLOQ9NR28 239 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 POLE4Q9NR33 117 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 MRPL22Q9NWU5 206 aaKnown RBP6.7□□□□□ -1.34
VPS39-204ENST00000561818 FRRS1LQ9P0K9 344 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 EXTL2Q9UBQ6 330 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 STEAP1Q9UHE8 339 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 CAMK2AQ9UQM7 478 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 LRP12Q9Y561 859 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 FLVCR1Q9Y5Y0 555 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 CACNA1HO95180 2353 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 MPDZO75970 2070 aa6.7□□□□□ -1.34
VPS39-204ENST00000561818 TRAV17A0A0B4J275 112 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 A0A0U1RQV5 110 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 TEX51A0A1B0GUA7 166 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 A0A1W2PPL8 197 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 METTL21EPA6NDL7 271 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 TVP23AA6NH52 213 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 LRRC3CA6NJW4 275 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 ZNF724A8MTY0 619 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 E9PI62 339 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 H3BUI4 141 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 H7C1C5 153 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 J3QW42 95 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 SULT1C2O00338 296 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 DCTN6O00399 190 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 EIF1AYO14602 144 aaKnown RBP6.69□□□□□ -1.34
VPS39-204ENST00000561818 DHHO43323 396 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 ORC5O43913 435 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 TRAPPC6AO75865 159 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 NEURL1O76050 574 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms