RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 WNT11O96014 354 aa11.25□□□□□ -0.61
USP3-213ENST00000559711 KIR3DL2P43630 455 aa11.25□□□□□ -0.61
USP3-213ENST00000559711 CLDN18P56856 261 aa11.25□□□□□ -0.61
USP3-213ENST00000559711 PPIAP62937 165 aaKnown RBP11.25□□□□□ -0.61
USP3-213ENST00000559711 SPANXN2Q5MJ10 180 aa11.25□□□□□ -0.61
USP3-213ENST00000559711 FOXL2NBQ6ZUU3 175 aa11.25□□□□□ -0.61
USP3-213ENST00000559711 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.25□□□□□ -0.61
USP3-213ENST00000559711 SLC22A16Q86VW1 577 aa11.25□□□□□ -0.61
USP3-213ENST00000559711 C20orf196Q8IYI0 205 aa11.25□□□□□ -0.61
USP3-213ENST00000559711 TMEM178AQ8NBL3 297 aa11.25□□□□□ -0.61
USP3-213ENST00000559711 OR14A2Q96R54 314 aa11.25□□□□□ -0.61
USP3-213ENST00000559711 SLC30A2Q9BRI3 323 aa11.25□□□□□ -0.61
USP3-213ENST00000559711 MIXL1Q9H2W2 232 aa11.25□□□□□ -0.61
USP3-213ENST00000559711 ZCCHC4Q9H5U6 513 aa11.25□□□□□ -0.61
USP3-213ENST00000559711 UGT2A1Q9Y4X1 527 aa11.25□□□□□ -0.61
USP3-213ENST00000559711 LRP12Q9Y561 859 aa11.25□□□□□ -0.61
USP3-213ENST00000559711 PTPRZ1P23471 2315 aaPredicted RBP11.25□□□□□ -0.61
USP3-213ENST00000559711 A0A0G2JK05 382 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 A0A1W2PPL8 197 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 PIN1P1O15428 100 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 RGS5O15539 181 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 CEACAM4O75871 244 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 ZNF708P17019 499 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 DCTDP32321 178 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 SELENOPP49908 381 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 SLC10A1Q14973 349 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 Q499Y3 187 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 WDR38Q5JTN6 314 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 PHYHD1Q5SRE7 291 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 DDI2Q5TDH0 399 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 ZNF544Q6NX49 715 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 RHOUQ7L0Q8 258 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 LINC00346Q8IVM7 164 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 LAX1Q8IWV1 398 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 OR6N1Q8NGY5 312 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 ACOT12Q8WYK0 555 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 ROBO4Q8WZ75 1007 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 PNPLA2Q96AD5 504 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 KCTD12Q96CX2 325 aaKnown RBP11.24□□□□□ -0.61
USP3-213ENST00000559711 CEP19Q96LK0 163 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 DERL3Q96Q80 235 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 COMMD4Q9H0A8 199 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 SLC6A15Q9H2J7 730 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 OCEL1Q9H607 264 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 SEC61A2Q9H9S3 476 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 ABCB9Q9NP78 766 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 NOX4Q9NPH5 578 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 POLE4Q9NR33 117 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 LHFPL6Q9Y693 200 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 LOC110117498-PIK3R3F6TDL0 507 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 GPR171O14626 319 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 EFSO43281 561 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 PNPP00491 289 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 SRMP19623 302 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 RAB3BP20337 219 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 CDAP32320 146 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 NTF4P34130 210 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 LSM6P62312 80 aaKnown RBP11.24□□□□□ -0.61
USP3-213ENST00000559711 IFITM3Q01628 133 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 NHLH1Q02575 133 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 DEFB109BQ30KR1 87 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 HSD17B12Q53GQ0 312 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 CEP78Q5JTW2 689 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 OR7E24Q6IFN5 339 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 SFXN4Q6P4A7 337 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 MZT2AQ6P582 158 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 CORO6Q6QEF8 472 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 SPATC1Q76KD6 591 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 FCRLAQ7L513 359 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 CATSPERDQ86XM0 798 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 FAM109AQ8N4B1 249 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 ZNF676Q8N7Q3 588 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 IL17RDQ8NFM7 739 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 ABTB1Q969K4 478 aaPredicted RBP11.24□□□□□ -0.61
USP3-213ENST00000559711 ZNF845Q96IR2 970 aaPredicted RBP11.24□□□□□ -0.61
USP3-213ENST00000559711 C1orf198Q9H425 327 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 EMC7Q9NPA0 242 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 R4GMQ9 66 aa11.24□□□□□ -0.61
USP3-213ENST00000559711 IGKV3D-15A0A087WSY6 115 aa11.23□□□□□ -0.61
USP3-213ENST00000559711 TRBV5-7A0A0A0MS05 114 aa11.23□□□□□ -0.61
USP3-213ENST00000559711 A0A1W2PPK0 400 aa11.23□□□□□ -0.61
USP3-213ENST00000559711 DHHO43323 396 aa11.23□□□□□ -0.61
USP3-213ENST00000559711 ACTL6AO96019 429 aa11.23□□□□□ -0.61
USP3-213ENST00000559711 RAF1P04049 648 aa11.23□□□□□ -0.61
USP3-213ENST00000559711 ZNF12P17014 697 aa11.23□□□□□ -0.61
USP3-213ENST00000559711 MAPK3P27361 379 aaPredicted RBP11.23□□□□□ -0.61
USP3-213ENST00000559711 PPP3R1P63098 170 aa11.23□□□□□ -0.61
USP3-213ENST00000559711 MEIOBQ8N635 442 aa11.23□□□□□ -0.61
USP3-213ENST00000559711 OR10S1Q8NGN2 331 aa11.23□□□□□ -0.61
USP3-213ENST00000559711 GPR148Q8TDV2 347 aa11.23□□□□□ -0.61
USP3-213ENST00000559711 SLAMF6Q96DU3 332 aa11.23□□□□□ -0.61
USP3-213ENST00000559711 ZDHHC11Q9H8X9 412 aa11.23□□□□□ -0.61
USP3-213ENST00000559711 PAQR5Q9NXK6 330 aaPredicted RBP11.23□□□□□ -0.61
USP3-213ENST00000559711 COMMD3Q9UBI1 195 aa11.23□□□□□ -0.61
USP3-213ENST00000559711 GDF2Q9UK05 429 aaPredicted RBP11.23□□□□□ -0.61
USP3-213ENST00000559711 KCNMB2Q9Y691 235 aa11.23□□□□□ -0.61
USP3-213ENST00000559711 V9GYH0 126 aa11.23□□□□□ -0.61
USP3-213ENST00000559711 A0A1B0GVG6 124 aa11.22□□□□□ -0.61
USP3-213ENST00000559711 ANKRD61A6NGH8 418 aa11.22□□□□□ -0.61
USP3-213ENST00000559711 ACOD1A6NK06 481 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms