RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 NKAIN3Q8N8D7 197 aa12.12□□□□□ -0.47
SHMT2-222ENST00000555774 PLPP5Q8NEB5 264 aa12.12□□□□□ -0.47
SHMT2-222ENST00000555774 OR51S1Q8NGJ8 323 aa12.12□□□□□ -0.47
SHMT2-222ENST00000555774 ST8SIA1Q92185 356 aa12.12□□□□□ -0.47
SHMT2-222ENST00000555774 FOXRED1Q96CU9 486 aaPredicted RBP12.12□□□□□ -0.47
SHMT2-222ENST00000555774 SLC25A21Q9BQT8 299 aaPredicted RBP12.12□□□□□ -0.47
SHMT2-222ENST00000555774 TPSD1Q9BZJ3 242 aa12.12□□□□□ -0.47
SHMT2-222ENST00000555774 IGHV1OR21-1A0A087WYE8 117 aa12.11□□□□□ -0.47
SHMT2-222ENST00000555774 MEN1O00255 615 aa12.11□□□□□ -0.47
SHMT2-222ENST00000555774 DUX1O43812 170 aa12.11□□□□□ -0.47
SHMT2-222ENST00000555774 AQP8O94778 261 aa12.11□□□□□ -0.47
SHMT2-222ENST00000555774 PPP3CBP16298 524 aa12.11□□□□□ -0.47
SHMT2-222ENST00000555774 SUMO3P55854 103 aaPredicted RBP12.11□□□□□ -0.47
SHMT2-222ENST00000555774 NXPH1P58417 271 aa12.11□□□□□ -0.47
SHMT2-222ENST00000555774 VWA2Q5GFL6 755 aa12.11□□□□□ -0.47
SHMT2-222ENST00000555774 TMEM205Q6UW68 189 aa12.11□□□□□ -0.47
SHMT2-222ENST00000555774 NHLRC1Q6VVB1 395 aa12.11□□□□□ -0.47
SHMT2-222ENST00000555774 BPHLQ86WA6 291 aaPredicted RBP12.11□□□□□ -0.47
SHMT2-222ENST00000555774 OR4D10Q8NGI6 311 aa12.11□□□□□ -0.47
SHMT2-222ENST00000555774 RBPMSQ93062 196 aaKnown RBP12.11□□□□□ -0.47
SHMT2-222ENST00000555774 VN1R1Q9GZP7 353 aa12.11□□□□□ -0.47
SHMT2-222ENST00000555774 CDCP1Q9H5V8 836 aa12.11□□□□□ -0.47
SHMT2-222ENST00000555774 NARFLQ9H6Q4 476 aa12.11□□□□□ -0.47
SHMT2-222ENST00000555774 EXO5Q9H790 373 aa12.11□□□□□ -0.47
SHMT2-222ENST00000555774 TAS2R4Q9NYW5 299 aa12.11□□□□□ -0.47
SHMT2-222ENST00000555774 MED11Q9P086 117 aa12.11□□□□□ -0.47
SHMT2-222ENST00000555774 LOC390937A0A1W2PQ73 354 aa12.11□□□□□ -0.47
SHMT2-222ENST00000555774 hCG_1807616A0A1W2PRN6 198 aa12.11□□□□□ -0.47
SHMT2-222ENST00000555774 ANKUB1A6NFN9 424 aa12.11□□□□□ -0.47
SHMT2-222ENST00000555774 H3BSH0 61 aa12.11□□□□□ -0.47
SHMT2-222ENST00000555774 H3BUI4 141 aa12.11□□□□□ -0.47
SHMT2-222ENST00000555774 LDLRAD4O15165 306 aa12.11□□□□□ -0.47
SHMT2-222ENST00000555774 DOK2O60496 412 aa12.11□□□□□ -0.47
SHMT2-222ENST00000555774 CD3DP04234 171 aa12.11□□□□□ -0.47
SHMT2-222ENST00000555774 ATXN8OSP0DMR3 200 aa12.11□□□□□ -0.47
SHMT2-222ENST00000555774 ZNF823P16415 610 aa12.11□□□□□ -0.47
SHMT2-222ENST00000555774 DNASE1L1P49184 302 aa12.11□□□□□ -0.47
SHMT2-222ENST00000555774 HLXQ14774 488 aaPredicted RBP12.11□□□□□ -0.47
SHMT2-222ENST00000555774 C1orf100Q5SVJ3 147 aa12.11□□□□□ -0.47
SHMT2-222ENST00000555774 TSSK4Q6SA08 328 aa12.11□□□□□ -0.47
SHMT2-222ENST00000555774 TMUB2Q71RG4 321 aa12.11□□□□□ -0.47
SHMT2-222ENST00000555774 PRSS42Q7Z5A4 293 aa12.11□□□□□ -0.47
SHMT2-222ENST00000555774 MUC20Q8N307 709 aaPredicted RBP12.11□□□□□ -0.47
SHMT2-222ENST00000555774 PLPP7Q8NBV4 271 aa12.11□□□□□ -0.47
SHMT2-222ENST00000555774 OR5M1Q8NGP8 315 aa12.11□□□□□ -0.47
SHMT2-222ENST00000555774 TNFAIP8L1Q8WVP5 186 aa12.11□□□□□ -0.47
SHMT2-222ENST00000555774 ASB10Q8WXI3 467 aa12.11□□□□□ -0.47
SHMT2-222ENST00000555774 SEH1LQ96EE3 360 aa12.11□□□□□ -0.47
SHMT2-222ENST00000555774 SLC25A44Q96H78 314 aaPredicted RBP12.11□□□□□ -0.47
SHMT2-222ENST00000555774 COA3Q9Y2R0 106 aaPredicted RBP12.11□□□□□ -0.47
SHMT2-222ENST00000555774 C17orf51A8MQB3 221 aa12.1□□□□□ -0.47
SHMT2-222ENST00000555774 GOSR2O14653 212 aa12.1□□□□□ -0.47
SHMT2-222ENST00000555774 FBXO45P0C2W1 286 aa12.1□□□□□ -0.47
SHMT2-222ENST00000555774 ZNF35P13682 527 aa12.1□□□□□ -0.47
SHMT2-222ENST00000555774 RAB6AP20340 208 aa12.1□□□□□ -0.47
SHMT2-222ENST00000555774 ARRB1P49407 418 aaPredicted RBP12.1□□□□□ -0.47
SHMT2-222ENST00000555774 H2BFSP57053 126 aa12.1□□□□□ -0.47
SHMT2-222ENST00000555774 ETFDHQ16134 617 aa12.1□□□□□ -0.47
SHMT2-222ENST00000555774 TMEM244Q5VVB8 128 aa12.1□□□□□ -0.47
SHMT2-222ENST00000555774 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.1□□□□□ -0.47
SHMT2-222ENST00000555774 SLC26A10Q8NG04 563 aa12.1□□□□□ -0.47
SHMT2-222ENST00000555774 OR13C3Q8NGS6 347 aa12.1□□□□□ -0.47
SHMT2-222ENST00000555774 MFSD8Q8NHS3 518 aa12.1□□□□□ -0.47
SHMT2-222ENST00000555774 SCARB1Q8WTV0 552 aa12.1□□□□□ -0.47
SHMT2-222ENST00000555774 FOXN4Q96NZ1 517 aa12.1□□□□□ -0.47
SHMT2-222ENST00000555774 ADAM10O14672 748 aa12.1□□□□□ -0.47
SHMT2-222ENST00000555774 RAB3DO95716 219 aa12.1□□□□□ -0.47
SHMT2-222ENST00000555774 HRGP04196 525 aa12.1□□□□□ -0.47
SHMT2-222ENST00000555774 CD74P04233 296 aa12.1□□□□□ -0.47
SHMT2-222ENST00000555774 UBCP0CG48 685 aaKnown RBP12.1□□□□□ -0.47
SHMT2-222ENST00000555774 SRFP11831 508 aa12.1□□□□□ -0.47
SHMT2-222ENST00000555774 OR1D5P58170 312 aa12.1□□□□□ -0.47
SHMT2-222ENST00000555774 MELKQ14680 651 aa12.1□□□□□ -0.47
SHMT2-222ENST00000555774 GLYATL3Q5SZD4 288 aa12.1□□□□□ -0.47
SHMT2-222ENST00000555774 GPAT4Q86UL3 456 aa12.1□□□□□ -0.47
SHMT2-222ENST00000555774 DUSP19Q8WTR2 217 aa12.1□□□□□ -0.47
SHMT2-222ENST00000555774 DPYSL5Q9BPU6 564 aa12.1□□□□□ -0.47
SHMT2-222ENST00000555774 G6PC2Q9NQR9 355 aa12.1□□□□□ -0.47
SHMT2-222ENST00000555774 RDH8Q9NYR8 311 aa12.1□□□□□ -0.47
SHMT2-222ENST00000555774 ZNF224Q9NZL3 707 aa12.1□□□□□ -0.47
SHMT2-222ENST00000555774 OR52A1Q9UKL2 312 aa12.1□□□□□ -0.47
SHMT2-222ENST00000555774 MKL2Q9ULH7 1088 aa12.1□□□□□ -0.47
SHMT2-222ENST00000555774 THADAQ6YHU6 1953 aa12.1□□□□□ -0.47
SHMT2-222ENST00000555774 CPAMD8Q8IZJ3 1885 aa12.09□□□□□ -0.47
SHMT2-222ENST00000555774 LOC107986453A0A1B0GWG9 222 aa12.09□□□□□ -0.47
SHMT2-222ENST00000555774 NPIPA5E9PKD4 350 aa12.09□□□□□ -0.47
SHMT2-222ENST00000555774 WISP1O95388 367 aa12.09□□□□□ -0.47
SHMT2-222ENST00000555774 APOBEC1P41238 236 aaKnown RBP12.09□□□□□ -0.47
SHMT2-222ENST00000555774 C4orf46Q504U0 113 aa12.09□□□□□ -0.47
SHMT2-222ENST00000555774 PHF19Q5T6S3 580 aa12.09□□□□□ -0.47
SHMT2-222ENST00000555774 CHMP1BQ7LBR1 199 aa12.09□□□□□ -0.47
SHMT2-222ENST00000555774 DEFB119Q8N690 84 aa12.09□□□□□ -0.47
SHMT2-222ENST00000555774 PPP1R14AQ96A00 147 aa12.09□□□□□ -0.47
SHMT2-222ENST00000555774 DNAJA3Q96EY1 480 aa12.09□□□□□ -0.47
SHMT2-222ENST00000555774 OR11A1Q9GZK7 315 aa12.09□□□□□ -0.47
SHMT2-222ENST00000555774 KCNK15Q9H427 330 aa12.09□□□□□ -0.47
SHMT2-222ENST00000555774 LMAN1LQ9HAT1 526 aa12.09□□□□□ -0.47
SHMT2-222ENST00000555774 TMEM138Q9NPI0 162 aa12.09□□□□□ -0.47
SHMT2-222ENST00000555774 NPIPA1Q9UND3 350 aa12.09□□□□□ -0.47
SHMT2-222ENST00000555774 MPDZO75970 2070 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms