RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 ZNF707Q96C28 371 aaPredicted RBP1.72□□□□□ -2.13
VRK1-202ENST00000553683 CEP19Q96LK0 163 aa1.72□□□□□ -2.13
VRK1-202ENST00000553683 ZSCAN5AQ9BUG6 496 aa1.72□□□□□ -2.13
VRK1-202ENST00000553683 POTEKPQ9BYX7 375 aa1.72□□□□□ -2.13
VRK1-202ENST00000553683 SHCBP1LQ9BZQ2 653 aa1.72□□□□□ -2.13
VRK1-202ENST00000553683 ACTR6Q9GZN1 396 aa1.72□□□□□ -2.13
VRK1-202ENST00000553683 RAB33BQ9H082 229 aa1.72□□□□□ -2.13
VRK1-202ENST00000553683 LHX5Q9H2C1 402 aa1.72□□□□□ -2.13
VRK1-202ENST00000553683 ZNF430Q9H8G1 570 aaPredicted RBP1.72□□□□□ -2.13
VRK1-202ENST00000553683 COQ10BQ9H8M1 238 aa1.72□□□□□ -2.13
VRK1-202ENST00000553683 INPP5EQ9NRR6 644 aa1.72□□□□□ -2.13
VRK1-202ENST00000553683 INIPQ9NRY2 104 aa1.72□□□□□ -2.13
VRK1-202ENST00000553683 SDAD1Q9NVU7 687 aaKnown RBP eCLIP1.72□□□□□ -2.13
VRK1-202ENST00000553683 RAB20Q9NX57 234 aa1.72□□□□□ -2.13
VRK1-202ENST00000553683 GIN1Q9NXP7 522 aa1.72□□□□□ -2.13
VRK1-202ENST00000553683 TMOD2Q9NZR1 351 aa1.72□□□□□ -2.13
VRK1-202ENST00000553683 MARCOQ9UEW3 520 aaPredicted RBP1.72□□□□□ -2.13
VRK1-202ENST00000553683 SNX6Q9UNH7 406 aa1.72□□□□□ -2.13
VRK1-202ENST00000553683 SMARCA4P51532 1647 aa1.72□□□□□ -2.13
VRK1-202ENST00000553683 LAMC3Q9Y6N6 1575 aa1.72□□□□□ -2.13
VRK1-202ENST00000553683 RPAP1Q9BWH6 1393 aaPredicted RBP1.72□□□□□ -2.13
VRK1-202ENST00000553683 NUP214P35658 2090 aaPredicted RBP1.71□□□□□ -2.13
VRK1-202ENST00000553683 CCDC171Q6TFL3 1326 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 MAPK8IP3Q9UPT6 1336 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 CCDC180Q9P1Z9 1646 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 PRSS37A4D1T9 235 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 FAM47DPA6NHR8 397 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 TMEM210A6NLX4 147 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 XPO1O14980 1071 aaKnown RBP1.71□□□□□ -2.14
VRK1-202ENST00000553683 BIRC5O15392 142 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 MED7O43513 233 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 GATCO43716 136 aaKnown RBP1.71□□□□□ -2.14
VRK1-202ENST00000553683 SEMA3DO95025 777 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 RCBTB2O95199 551 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 APOEP02649 317 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 HMGN1P05114 100 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 CALM1P0DP23 149 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 CALM2P0DP24 149 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 CALM3P0DP25 149 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 ATF6P18850 670 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 M6PRP20645 277 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 CRABP2P29373 138 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 ALDH3A1P30838 453 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 RRM2P31350 389 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 RPL13AP40429 203 aaKnown RBP1.71□□□□□ -2.14
VRK1-202ENST00000553683 PRMT2P55345 433 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 PSMC5P62195 406 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 XIAPP98170 497 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 KLRB1Q12918 225 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 PPIL2Q13356 520 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 MAB21L1Q13394 359 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 PON2Q15165 354 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 GUCA2BQ16661 112 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 KRTAP13-2Q52LG2 175 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 TTMPQ5BVD1 217 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 TMEM31Q5JXX7 168 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 THEM4Q5T1C6 240 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 Q5W150 140 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 PTRHD1Q6GMV3 140 aaKnown RBP1.71□□□□□ -2.14
VRK1-202ENST00000553683 TTC23LQ6PF05 361 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 Q6ZR03 302 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 CCDC121Q6ZUS5 278 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 PGAP1Q75T13 922 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 TAS2R42Q7RTR8 314 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 TMCO2Q7Z6W1 182 aaPredicted RBP1.71□□□□□ -2.14
VRK1-202ENST00000553683 STX12Q86Y82 276 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 CDKL3Q8IVW4 592 aaPredicted RBP1.71□□□□□ -2.14
VRK1-202ENST00000553683 SLC38A6Q8IZM9 456 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 ST13P4Q8IZP2 240 aaPredicted RBP1.71□□□□□ -2.14
VRK1-202ENST00000553683 SYCE1Q8N0S2 351 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 TCAIMQ8N3R3 496 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 NATD1Q8N6N6 113 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 BHLHE23Q8NDY6 225 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 STEAP2Q8NFT2 490 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 OR8J2Q8NGG1 315 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 PDCD6IPQ8WUM4 868 aaKnown RBP1.71□□□□□ -2.14
VRK1-202ENST00000553683 RLN3Q8WXF3 142 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 TNFRSF14Q92956 283 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 ISG20Q96AZ6 181 aaKnown RBP1.71□□□□□ -2.14
VRK1-202ENST00000553683 RAD51AP1Q96B01 352 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 CHMP6Q96FZ7 201 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 BMFQ96LC9 184 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 SENP8Q96LD8 212 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 OXGR1Q96P68 337 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 OPALINQ96PE5 141 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 PANX2Q96RD6 677 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 RNF2Q99496 336 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 ACBD6Q9BR61 282 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 ZNF2Q9BSG1 426 aaPredicted RBP1.71□□□□□ -2.14
VRK1-202ENST00000553683 MTG1Q9BT17 334 aaPredicted RBP1.71□□□□□ -2.14
VRK1-202ENST00000553683 TPPP3Q9BW30 176 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 ING2Q9H160 280 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 LRRN3Q9H3W5 708 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 ZSCAN16Q9H4T2 348 aaPredicted RBP1.71□□□□□ -2.14
VRK1-202ENST00000553683 EXO5Q9H790 373 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 NOX3Q9HBY0 568 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 NEK6Q9HC98 313 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 SLC40A1Q9NP59 571 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 TREM1Q9NP99 234 aa1.71□□□□□ -2.14
VRK1-202ENST00000553683 C12orf4Q9NQ89 552 aa1.71□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms