RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 ARIH2OSQ8N7S6 290 aa7.5□□□□□ -1.21
VPS29-203ENST00000546588 POMGNT2Q8NAT1 580 aa7.5□□□□□ -1.21
VPS29-203ENST00000546588 PROKR2Q8NFJ6 384 aa7.5□□□□□ -1.21
VPS29-203ENST00000546588 ZNF420Q8TAQ5 688 aaPredicted RBP7.5□□□□□ -1.21
VPS29-203ENST00000546588 NMD3Q96D46 503 aaKnown RBP7.5□□□□□ -1.21
VPS29-203ENST00000546588 LGALS12Q96DT0 336 aa7.5□□□□□ -1.21
VPS29-203ENST00000546588 ERMAPQ96PL5 475 aaPredicted RBP7.5□□□□□ -1.21
VPS29-203ENST00000546588 SF3B5Q9BWJ5 86 aaKnown RBP7.5□□□□□ -1.21
VPS29-203ENST00000546588 HCAR1Q9BXC0 346 aa7.5□□□□□ -1.21
VPS29-203ENST00000546588 ISYNA1Q9NPH2 558 aa7.5□□□□□ -1.21
VPS29-203ENST00000546588 DDX28Q9NUL7 540 aaKnown RBP7.5□□□□□ -1.21
VPS29-203ENST00000546588 ANKRD10Q9NXR5 420 aa7.5□□□□□ -1.21
VPS29-203ENST00000546588 IL19Q9UHD0 177 aa7.5□□□□□ -1.21
VPS29-203ENST00000546588 DKKL1Q9UK85 242 aa7.5□□□□□ -1.21
VPS29-203ENST00000546588 CDC42EP3Q9UKI2 254 aa7.5□□□□□ -1.21
VPS29-203ENST00000546588 MOKQ9UQ07 419 aa7.5□□□□□ -1.21
VPS29-203ENST00000546588 ADAM18Q9Y3Q7 739 aa7.5□□□□□ -1.21
VPS29-203ENST00000546588 DMRT1Q9Y5R6 373 aa7.5□□□□□ -1.21
VPS29-203ENST00000546588 CACNA1GO43497 2377 aa7.5□□□□□ -1.21
VPS29-203ENST00000546588 PHF3Q92576 2039 aaKnown RBP7.5□□□□□ -1.21
VPS29-203ENST00000546588 SPENQ96T58 3664 aaKnown RBP7.49□□□□□ -1.21
VPS29-203ENST00000546588 TRAV17A0A0B4J275 112 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 OR6C68A6NDL8 312 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 A6NIZ1 184 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 PRR23D1E9PI22 279 aaPredicted RBP7.49□□□□□ -1.21
VPS29-203ENST00000546588 LY86O95711 162 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 HIST1H2ABP04908 130 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 SNRNP70P08621 437 aaKnown RBP7.49□□□□□ -1.21
VPS29-203ENST00000546588 GSTT2P0CG29 244 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 GSTT2BP0CG30 244 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 PRR23D2P0DMB1 279 aaPredicted RBP7.49□□□□□ -1.21
VPS29-203ENST00000546588 ADORA3P0DMS8 318 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 ZNF708P17019 499 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 PAICSP22234 425 aaKnown RBP7.49□□□□□ -1.21
VPS29-203ENST00000546588 SHC1P29353 583 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 BMI1P35226 326 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 CAPZA2P47755 286 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 LHX2P50458 406 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 DAP3P51398 398 aaKnown RBP7.49□□□□□ -1.21
VPS29-203ENST00000546588 SUCLG1P53597 346 aaKnown RBP7.49□□□□□ -1.21
VPS29-203ENST00000546588 UCNP55089 124 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 CLDN15P56746 228 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 CTXN1P60606 82 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 RAP1BP61224 184 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 RAP1AP62834 184 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 HTD2P86397 168 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 OC90Q02509 493 aaPredicted RBP7.49□□□□□ -1.21
VPS29-203ENST00000546588 TLE3Q04726 772 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 KRR1Q13601 381 aaKnown RBP7.49□□□□□ -1.21
VPS29-203ENST00000546588 ZNF766Q5HY98 468 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 EEF1A1P5Q5VTE0 462 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 Q6ZS92 163 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 HIST3H2AQ7L7L0 130 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 ZNF367Q7RTV3 350 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 HDDC2Q7Z4H3 204 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 CPOQ8IVL8 374 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 FNDC8Q8TC99 324 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 ASB10Q8WXI3 467 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 HIST1H2ACQ93077 130 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 TMEM80Q96HE8 168 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 PLEKHA8Q96JA3 519 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 ADAD1Q96M93 576 aaKnown RBP7.49□□□□□ -1.21
VPS29-203ENST00000546588 KLHL15Q96M94 604 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 TEAD3Q99594 435 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 TIMP4Q99727 224 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 MRPL13Q9BYD1 178 aaKnown RBP7.49□□□□□ -1.21
VPS29-203ENST00000546588 RNF122Q9H9V4 155 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 INIPQ9NRY2 104 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 DNAJC27Q9NZQ0 273 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 ERVK-18Q9QC07 812 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 SEC14L4Q9UDX3 406 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 RASD1Q9Y272 281 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 NOX1Q9Y5S8 564 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 IER3IP1Q9Y5U9 82 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 FKBP7Q9Y680 259 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 COMMD3-BMI1R4GMX3 469 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 PMF1-BGLAPU3KQ54 211 aa7.49□□□□□ -1.21
VPS29-203ENST00000546588 IGKV3D-15A0A087WSY6 115 aa7.48□□□□□ -1.21
VPS29-203ENST00000546588 A0A087WV48 116 aa7.48□□□□□ -1.21
VPS29-203ENST00000546588 TEX13CA0A0J9YWL9 993 aa7.48□□□□□ -1.21
VPS29-203ENST00000546588 BLOC1S5-TXNDC5H3BN57 136 aa7.48□□□□□ -1.21
VPS29-203ENST00000546588 KLK10O43240 276 aa7.48□□□□□ -1.21
VPS29-203ENST00000546588 GLCEO94923 617 aa7.48□□□□□ -1.21
VPS29-203ENST00000546588 RAB36O95755 333 aa7.48□□□□□ -1.21
VPS29-203ENST00000546588 FADS2O95864 444 aaKnown RBP7.48□□□□□ -1.21
VPS29-203ENST00000546588 ACTL6AO96019 429 aa7.48□□□□□ -1.21
VPS29-203ENST00000546588 GLAP06280 429 aa7.48□□□□□ -1.21
VPS29-203ENST00000546588 STSP08842 583 aa7.48□□□□□ -1.21
VPS29-203ENST00000546588 QDPRP09417 244 aa7.48□□□□□ -1.21
VPS29-203ENST00000546588 SBK2P0C263 348 aa7.48□□□□□ -1.21
VPS29-203ENST00000546588 LIMS3P0CW19 117 aa7.48□□□□□ -1.21
VPS29-203ENST00000546588 LIMS4P0CW20 117 aa7.48□□□□□ -1.21
VPS29-203ENST00000546588 CPN1P15169 458 aa7.48□□□□□ -1.21
VPS29-203ENST00000546588 SPI1P17947 270 aa7.48□□□□□ -1.21
VPS29-203ENST00000546588 EEF1B2P24534 225 aaKnown RBP7.48□□□□□ -1.21
VPS29-203ENST00000546588 GDF1P27539 372 aa7.48□□□□□ -1.21
VPS29-203ENST00000546588 C21orf33P30042 268 aaPredicted RBP7.48□□□□□ -1.21
VPS29-203ENST00000546588 CDKN2AP42771 156 aaKnown RBP7.48□□□□□ -1.21
VPS29-203ENST00000546588 MEOX1P50221 254 aa7.48□□□□□ -1.21
VPS29-203ENST00000546588 NUDT6P53370 316 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms